Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol YGDL1
Gene Symbol Synonym OsAld-Y, Ald-Y, YGDL-1, OsFBA3, FBA3, DTN1, OsDTN1
CGSNL Gene Name YELLOW GREEN AND DROOPY LEAF-1
Gene Name Synonym "Fru-1,6-bisphosphatase", "fructose-1,6-bisphosphate aldolase Y", yellow green and droopy leaf-1, YELLOW GREEN AND DROOPY LEAF 1, "fructose-bisphosphate aldolase, cytoplasmic isozyme 1", Fructose-1,6-bisphosphate aldolase 3, Decreased Tiller Number 1
Protein Name FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE Y
Allele ygdl-1, dtn1, dtn1-1, dtn1-2, dtn1-3, dtn1-4
Chromosome No. 6
Explanation Dark reaction group D3. GO:0090391: geranium assembly.
Trait Class Coloration - Anthocyanin
Tolerance and resistance - Stress tolerance
Vegetative organ - Culm
Biochemical character
Coloration - Chlorophyll
Expression
Sequence/Locus
cDNA Accession No. AK064989
MSU ID LOC_Os06g40640.1
LOC_Os06g40640.2
LOC_Os06g40640.3
LOC_Os06g40640.4
RAP ID Os06g0608700
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Liu X., Gao Y., Tang S., Ben L., Zhang X., Dong G., Zhou J., Lin L., Yang Z., Zhou Y., Huang J., Yao Y.
Rice (N Y) 2025  18(1)  28
A Dual-localized Fructose Bisphosphate Aldolase is Essential for Chloroplast Development and Carbon Metabolism in Rice.
Wen R., Zhu M., Yu J., Kou L., Ahmad S., Wei X., Jiao G., Hu S., Sheng Z., Zhao F., Tang S., Shao G., Yu H., Hu P.
New Phytol. 2024  243(4)  1440-1454
Photosynthesis regulates tillering bud elongation and nitrogen-use efficiency via sugar-induced NGR5 in rice.
Chen X., Tao Y., Ali A., Zhuang Z., Guo D., Guo Q., Riaz A., Zhang H., Xu P., Liao Y., Wang J., Sun C., Xiang Q., Wu X.
Int J Mol Sci 2019  20(10) 
Transcriptome and Proteome Profiling of Different Colored Rice Reveals Physiological Dynamics Involved in the Flavonoid Pathway.
Zhang F., Zhang P., Zhang Y., Wang S., Qu L., Liu X., Luo J.
Plant Sci. 2016  250  205-15
Identification of a peroxisomal-targeted aldolase involved in chlorophyll biosynthesis and sugar metabolism in rice.
Park S.H., Chung P.J., Juntawong P., Bailey-Serres J., Kim Y.S., Jung H., Bang S.W., Kim Y.K., Do Choi Y., Kim J.K.
Plant Physiol. 2012  159(3)  1111-24
Posttranscriptional Control of Photosynthetic mRNA Decay under Stress Conditions Requires 3' and 5' Untranslated Regions and Correlates with Differential Polysome Association in Rice.
DB Reference
Gramene ID -
Ontologies
Gene Ontology response to hypoxia( GO:0001666 )
fructose-bisphosphate aldolase activity( GO:0004332 )
glycolysis( GO:0006096 )
chloroplast( GO:0009507 )
chlorophyll biosynthetic process( GO:0015995 )
nucleotide-sugar metabolic process( GO:0009225 )
chloroplast organization( GO:0009658 )
peroxisome( GO:0005777 )
flavonoid biosynthetic process( GO:0009813 )
response to light stimulus( GO:0009416 )
regulation of photosynthesis( GO:0010109 )
regulation of chlorophyll biosynthetic process( GO:0010380 )
Trait Ontology chlorophyll-a content( TO:0000293 )
chlorophyll-b content( TO:0000295 )
chlorophyll ratio( TO:0000298 )
carotene content( TO:0000289 )
chloroplast development trait( TO:0002715 )
photosynthetic rate( TO:0001015 )
light sensitivity( TO:0000075 )
sucrose content( TO:0000328 )
sugar content( TO:0000333 )
tiller number( TO:0000346 )
plant height( TO:0000207 )
culm number( TO:0000027 )
leaf color( TO:0000326 )
net photosynthetic rate( TO:0001027 )
glucose content( TO:0000300 )
fructose content( TO:0006005 )
Plant Ontology leaf( PO:0025034 )
leaf sheath( PO:0020104 )
stem( PO:0009047 )
Related Strains
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Phenotype images
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Last updated
Mar 5, 2026

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