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Basic Information
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CGSNL Gene Symbol
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PHD1
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Gene Symbol Synonym
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OsPHD1, LM212-1
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CGSNL Gene Name
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PHOTOASSIMILATE DEFECTIVE 1
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Gene Name Synonym
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photoassimilate defective1, photoassimilate defective 1, lesion mimic 212-1
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Protein Name
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Allele
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phd1, phd1-1, phd1-2, phd1-3, lm212-1
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Chromosome No.
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1
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Explanation
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PHD1 encodes a functional chloroplast-localized UDP-glucose epimerase (UGE). PO:0030123: panicle inflorescence. GO:0140426: PAMP-triggered immunity signalling pathway. GO:2000377: regulation of reactive oxygen species metabolic process.
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Trait Class
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Biochemical character
Coloration - Chlorophyll
Vegetative organ - Leaf
Tolerance and resistance - Disease resistance
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK119785
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MSU ID
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LOC_Os01g26920.1
LOC_Os01g26920.2
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RAP ID
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Os01g0367100
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Gao Y., Xiang X., Zhang Y., Cao Y., Wang B., Zhang Y., Wang C., Jiang M., Duan W., Chen D., Zhan X., Cheng S., Liu Q., Cao L.
Int J Mol Sci 2022 23(2)
Disruption of <i>OsPHD1</i>, Encoding a UDP-glucose epimerase, Causes JA Accumulation and Enhanced Bacterial Blight Resistance in Rice.
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Zhang R., Hu H., Wang Y., Hu Z., Ren S., Li J., He B., Wang Y., Xia T., Chen P., Xie G., Peng L.
J. Exp. Bot. 2020
A novel rice fragile culm 24 mutant encodes a UDP-glucose epimerase that affects cell wall property and photosynthesis.
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Gao D., Sun W., Wang D., Dong H., Zhang R., Yu S.
Sci Rep 2020 10(1) 3726
A xylan glucuronosyltransferase gene exhibits pleiotropic effects on cellular composition and leaf development in rice.
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Liu S., Tang Y., Ruan N., Dang Z., Huang Y., Miao W., Xu Z., Li F.
Rice (N Y) 2020 13(1) 41
The Rice bz1 Locus Is Required for Glycosylation of Arabinogalactan Proteins and Galactolipid and Plays a Role in both Mechanical Strength and Leaf Color.
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Abbai R., Singh V.K., Nachimuthu V.V., Sinha P., Selvaraj R., Vipparla A.K., Singh A.K., Singh U.M., Varshney R.K., Kumar A.
Plant Biotechnol. J. 2019
Haplotype analysis of key genes governing grain yield and quality traits across 3K RG panel reveals scope for the development of tailor-made rice with enhanced genetic gains.
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Li C., Wang Y., Liu L., Hu Y., Zhang F., Mergen S., Wang G., Schläppi MR., Chu C.
PLoS Genet. 2011 7(7) e1002196
A rice plastidial nucleotide sugar epimerase is involved in galactolipid biosynthesis and improves photosynthetic efficiency.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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chloroplast organization( GO:0009658 )
chloroplast( GO:0009507 )
defense response to bacterium( GO:0042742 )
response to molecule of bacterial origin( GO:0002237 )
response to molecule of fungal origin( GO:0002238 )
response to chitin( GO:0010200 )
regulation of cell death( GO:0010941 )
jasmonic acid mediated signaling pathway( GO:0009867 )
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Trait Ontology
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chlorophyll content( TO:0000495 )
photosynthetic ability( TO:0000316 )
chloroplast development trait( TO:0002715 )
jasmonic acid content( TO:0002668 )
bacterial blight disease resistance( TO:0000175 )
fungal disease resistance( TO:0000439 )
mimic response( TO:0000063 )
hydrogen peroxide content( TO:0000605 )
carotenoid content( TO:0000496 )
chlorophyll-a content( TO:0000293 )
chlorophyll-b content( TO:0000295 )
leaf color( TO:0000326 )
net photosynthetic rate( TO:0001027 )
transpiration rate( TO:0001018 )
soluble protein content( TO:0000325 )
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Plant Ontology
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root( PO:0009005 )
stem( PO:0009047 )
leaf( PO:0025034 )
leaf sheath( PO:0020104 )
inflorescence( PO:0009049 )
stem internode( PO:0020142 )
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Related Strains
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Phenotype images
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Last updated
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Jun 13, 2022
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Update info.