Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol PHD1
Gene Symbol Synonym OsPHD1
Gene Name Synonym photoassimilate defective1, photoassimilate defective 1
Protein Name
Allele phd1, phd1-1, phd1-2, phd1-3
Chromosome No. 1
Explanation PHD1 encodes a functional chloroplast-localized UDP-glucose epimerase (UGE).
Trait Class Biochemical character
Coloration - Chlorophyll
cDNA Accession No. AK119785
MSU ID LOC_Os01g26920.1
RAP ID Os01g0367100
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Zhang R., Hu H., Wang Y., Hu Z., Ren S., Li J., He B., Wang Y., Xia T., Chen P., Xie G., Peng L.
J. Exp. Bot. 2020   
A novel rice fragile culm 24 mutant encodes a UDP-glucose epimerase that affects cell wall property and photosynthesis.
Gao D., Sun W., Wang D., Dong H., Zhang R., Yu S.
Sci Rep 2020  10(1)  3726
A xylan glucuronosyltransferase gene exhibits pleiotropic effects on cellular composition and leaf development in rice.
Liu S., Tang Y., Ruan N., Dang Z., Huang Y., Miao W., Xu Z., Li F.
Rice (N Y) 2020  13(1)  41
The Rice bz1 Locus Is Required for Glycosylation of Arabinogalactan Proteins and Galactolipid and Plays a Role in both Mechanical Strength and Leaf Color.
Abbai R., Singh V.K., Nachimuthu V.V., Sinha P., Selvaraj R., Vipparla A.K., Singh A.K., Singh U.M., Varshney R.K., Kumar A.
Plant Biotechnol. J. 2019   
Haplotype analysis of key genes governing grain yield and quality traits across 3K RG panel reveals scope for the development of tailor-made rice with enhanced genetic gains.
Li C., Wang Y., Liu L., Hu Y., Zhang F., Mergen S., Wang G., Schläppi MR., Chu C.
PLoS Genet. 2011  7(7)  e1002196
A rice plastidial nucleotide sugar epimerase is involved in galactolipid biosynthesis and improves photosynthetic efficiency.
TextPresso Search Search textpresso for PHD1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology chloroplast organization( GO:0009658 )
Trait Ontology chlorophyll content( TO:0000495 )
photosynthetic ability( TO:0000316 )
chloroplast development trait( TO:0002715 )
Plant Ontology -
Related Strains
Phenotype images
Last updated
Sep 14, 2020