Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol MADS78
Gene Symbol Synonym OsMADS78
CGSNL Gene Name MADS BOX GENE 78
Gene Name Synonym MADS box gene78, MADS box gene 78, MADS-box transcription factor 78
Protein Name MADS-BOX TRANSCRIPTION FACTOR 78
Allele mads78_17, mads78_19
Chromosome No. 9
Explanation GO:0071704: organic substance metabolic process. GO:1901135: carbohydrate derivative metabolic process.
Trait Class Reproductive organ - Pollination, fertilization, fertility
Seed - Morphological traits - Endosperm
Seed - Morphological traits - Grain shape
Seed - Physiological traits - Storage substances
Other
Expression
Sequence/Locus
cDNA Accession No. -
MSU ID LOC_Os09g02830.1
RAP ID Os09g0116800
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Paul P., Dhatt B.K., Miller M., Folsom J.J., Wang Z., Krassovskaya I., Liu K., Sandhu J., Yu H., Zhang C., Obata T., Staswick P., Walia H.
Plant Physiol. 2020  182(2)  933-948
<i>MADS78</i> and <i>MADS79</i> Are Essential Regulators of Early Seed Development in Rice.
Wang L., Yuan J., Ma Y., Jiao W., Ye W., Yang D.L., Yi C., Chen Z.J.
Mol Plant 2018  11(2)  300-314
Rice Interploidy Crosses Disrupt Epigenetic Regulation, Gene Expression, and Seed Development.
Arora R., Agarwal P., Ray S., Ashok Kumar Singh, Vijay Pal Singh, Akhilesh K Tyagi, Kapoor S.
BMC Genomics 2007  8  242
MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress.
DB Reference
Gramene ID -
Ontologies
Gene Ontology nucleus( GO:0005634 )
transcription, DNA-dependent( GO:0006351 )
regulation of transcription, DNA-dependent( GO:0006355 )
regulation of nitrogen compound metabolic process( GO:0051171 )
regulation of starch biosynthetic process( GO:0010581 )
auxin homeostasis( GO:0010252 )
cellularization of endosperm( GO:0010342 )
regulation of seed development( GO:0080050 )
DNA binding( GO:0003677 )
Trait Ontology seed development trait( TO:0000653 )
seed size( TO:0000391 )
seed quality( TO:0000162 )
spikelet sterility( TO:0000436 )
1000-dehulled grain weight( TO:0000592 )
starch grain synthesis( TO:0002658 )
seed shape( TO:0000484 )
protein content( TO:0000598 )
glucose content( TO:0000300 )
fructose content( TO:0006005 )
endosperm storage protein content( TO:0002653 )
Plant Ontology seed development stage( PO:0001170 )
seed( PO:0009010 )
Related Strains
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Phenotype images
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Last updated
Oct 22, 2021

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