|
Basic Information
|
|
CGSNL Gene Symbol
|
MIR528
|
|
Gene Symbol Synonym
|
miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2
|
|
CGSNL Gene Name
|
MICRORNA528
|
|
Gene Name Synonym
|
MICRORNA528, osa-miRNA528, os-miRNA528
|
|
Protein Name
|
_
|
|
Allele
|
MIR528-A1, MIR528-A2, mir528
|
|
Chromosome No.
|
3
|
|
Explanation
|
miRBASE accession: MI0003201. LM379808. OsMIR528 target genes: Os03g0129400, Os06g0567900, Os08g0137400, Os06g0154200, and Os07g0570550. the predicted target genes: LOC_Os01g57990 (no RAPID), Os01g0775100. GO:1901002: positive regulation of response to salt stress.
|
|
Trait Class
|
Reproductive organ - Heading date
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Other
|
|
Expression
|
|
|
Sequence/Locus
|
|
cDNA Accession No.
|
-
|
|
MSU ID
|
-
|
|
RAP ID
|
-
|
|
Links
|
-
|
INSD Accession List
(Test version)
|
-
|
|
Map
|
|
Locate(cM)
|
|
|
Link map
|
Classical linkage map
|
|
References
|
|
Lu Z., Huang W., Zhu L., Liang G., Huang Y., Wu J., Chen R., Li X., Liu X.
Plants (Basel) 2024 13(11)
Cytological Observation and RNA-Seq Analyses Reveal <i>miR9564</i> and Its Target Associated with pollen sterility in Autotetraploid Rice.
|
|
Kumar D., Ramkumar M.K., Dutta B., Kumar A., Pandey R., Jain P.K., Gaikwad K., Mishra D.C., Chaturvedi K.K., Rai A., Solanke A.U., Sevanthi A.M.
BMC Genomics 2023 24(1) 526
Integration of miRNA dynamics and drought tolerant QTLs in rice reveals the role of miR2919 in drought stress response.
|
|
Huo C., Zhang B., Wang R.
Plant Signal Behav 2022 17(1) 2004035
Research progress on plant noncoding RNAs in response to low-temperature stress.
|
|
Liu A., Zhou Z., Yi Y., Chen G.
BMC Genomics 2020 21(1) 127
Transcriptome analysis reveals the roles of stem nodes in cadmium transport to rice grain.
|
|
Jia Y., Li C., Li Q., Liu P., Liu D., Liu Z., Wang Y., Jiang G., Zhai W.
Int J Mol Sci 2020 21(3)
Characteristic Dissection of <i>Xanthomonas oryzae</i> pv. o<i>ryzae</i> Responsive MicroRNAs in Rice.
|
|
Zhang Y.C., He R.R., Lian J.P., Zhou Y.F., Zhang F., Li Q.F., Yu Y., Feng Y.Z., Yang Y.W., Lei M.Q., He H., Zhang Z., Chen Y.Q.
Proc. Natl. Acad. Sci. U.S.A. 2020 117(1) 727-732
OsmiR528 regulates rice-pollen intine formation by targeting an uclacyanin to influence flavonoid metabolism.
|
|
Yang R., Li P., Mei H., Wang D., Sun J., Yang C., Hao L., Cao S., Chu C., Hu S., Song X., Cao X.
Mol Plant 2019
Fine-Tuning of miR528 Accumulation Modulates Flowering Time in Rice.
|
|
Tang W., Wells A Thompson
Curr. Genomics 2019 20(2) 100-114
OsmiR528 Enhances Cold Stress Tolerance by Repressing Expression of stress response-related transcription factor.Genes in Plant Cells.
|
|
Balyan S., Kumar M., Mutum R.D., Raghuvanshi U., Agarwal P., Mathur S., Raghuvanshi S.
Sci Rep 2017 7(1) 15446
Identification of miRNA-mediated drought responsive multi-tiered regulatory network in drought tolerant rice, Nagina 22.
|
|
Zhou J., Deng K., Cheng Y., Zhong Z., Tian L., Tang X., Tang A., Zheng X., Zhang T., Qi Y., Zhang Y.
Front Plant Sci 2017 8 1598
CRISPR-Cas9 Based Genome Editing Reveals New Insights into MicroRNA Function and Regulation in Rice.
|
|
Zheng L., Zhang C., Shi C., Yang Z., Wang Y., Zhou T., Sun F., Wang H., Zhao S., Qin Q., Qiao R., Ding Z., Wei C., Xie L., Wu J., Li Y.
PLoS Pathog. 2017 13(10) e1006662
Rice stripe virus NS3 protein regulates primary miRNA processing through association with the miRNA biogenesis factor OsDRB1 and facilitates virus infection in rice.
|
|
Tian C., Zuo Z., Qiu J.L.
J Genet Genomics 2015 42(7) 393-402
Identification and Characterization of ABA-Responsive MicroRNAs in Rice.
|
|
Ueda Y., Siddique S., Frei M.
Plant Physiol. 2015
A novel gene OsORAP1 enhances cell death in ozone stress in rice (Oryza sativa L.).
|
|
Kozomara,A. and Griffiths-Jones,S.
Nucleic Acids Res. 2011 39 D152-D157
miRBase: integrating microRNA annotation and deep-sequencing data
|
|
Jeong D.H., Park S., Zhai J., Gurazada S.G., De Paoli E., Meyers B.C., Green P.J.
Plant Cell 2011 23(12) 4185-207
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.
|
|
Ding Y., Chen Z., Zhu C.
J. Exp. Bot. 2011 62(10) 3563-73
Microarray-based analysis of cadmium-responsive microRNAs in rice (Oryza sativa).
|
|
Luo YC,Zhou H,Li Y,Chen JY,Yang JH,Chen YQ,Qu LH
FEBS Lett. 2006 580 5111-6
Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development.
|
|
Liu B., Li P., Li X., Liu C., Cao S., Chu C., Cao X.
Plant Physiol. 2005 139(1) 296-305
Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice.
|
|
DB Reference
|
|
Gramene ID
|
-
|
|
Ontologies
|
|
Gene Ontology
|
ion homeostasis( GO:0050801 )
photoperiodism, flowering( GO:0048573 )
response to cadmium ion( GO:0046686 )
response to cold( GO:0009409 )
pollen wall assembly( GO:0010208 )
pollen development( GO:0009555 )
response to water deprivation( GO:0009414 )
defense response to bacterium( GO:0042742 )
mRNA cleavage( GO:0006379 )
RNA-induced silencing complex( GO:0016442 )
micro-ribonucleoprotein complex( GO:0035068 )
plant-type spore development( GO:0048236 )
flavonoid metabolic process( GO:0009812 )
pollen germination( GO:0009846 )
gene silencing by miRNA( GO:0035195 )
response to salt stress( GO:0009651 )
positive regulation of long-day photoperiodism, flowering( GO:0048578 )
aging( GO:0007568 )
circadian rhythm( GO:0007623 )
|
|
Trait Ontology
|
salt tolerance( TO:0006001 )
days to heading( TO:0000137 )
flowering time( TO:0002616 )
male sterility( TO:0000437 )
seed set percent( TO:0000455 )
sporogenesis( TO:0000727 )
bacterial blight disease resistance( TO:0000175 )
drought tolerance( TO:0000276 )
cold tolerance( TO:0000303 )
sugar content( TO:0000333 )
sucrose content( TO:0000328 )
fructose content( TO:0006005 )
|
|
Plant Ontology
|
pollen development stage( PO:0001007 )
J bicellular pollen stage( PO:0001059 )
L mature pollen stage( PO:0001016 )
K second mitotic division stage( PO:0001015 )
pollen( PO:0025281 )
anther( PO:0009066 )
|
|
Related Strains
|
|
-
|
|
Phenotype images
|
|
-
|
|
Last updated
|
|
Sep 25, 2024
|
Update info.