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Basic Information
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CGSNL Gene Symbol
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NRR
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Gene Symbol Synonym
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OsNRR, NRRa, NRRb, OsCCT18, OsCMF6, CCT18, CMF6, CRCT, OsCRCT
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CGSNL Gene Name
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NUTRITION RESPONSE AND ROOT GROWTH
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Gene Name Synonym
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nutrition response and root growth, CCT domain-containing gene 18, CCT (CO, CO-LIKE and TOC1) domain protein 18, CCT domain protein 18, CCT MOTIF FAMILY (CMF) gene 6, "CO2-Responsive CONSTANS, CONSTANSlike, and Time of Chlorophyll a/b Binding Protein1", CO2-responsive CCT protein
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Protein Name
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Allele
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Chromosome No.
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5
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Explanation
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GO:2000904: regulation of starch metabolic process. GO:1901698: response to nitrogen compound.
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Trait Class
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Other
Tolerance and resistance - Stress tolerance
Vegetative organ - Root
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK059614
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MSU ID
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LOC_Os05g51690.1
LOC_Os05g51690.2
LOC_Os05g51690.3
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RAP ID
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Os05g0595300
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Liao Z., Xia X., Zhang Z., Nong B., Guo H., Feng R., Chen C., Xiong F., Qiu Y., Li D., Yang X.
Front Plant Sci 2023 14 1126254
Genome-wide association study using specific-locus amplified fragment sequencing identifies new genes influencing nitrogen use efficiency in rice landraces.
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Fukayama H., Miyagawa F., Shibatani N., Koudou A., Sasayama D., Hatanaka T., Azuma T., Yamauchi Y., Matsuoka D., Morita R.
Plant Cell Environ. 2021 44(8) 2480-2493
CO2 -responsive CCT protein interacts with 14-3-3 proteins and controls the expression of starch synthesis-related genes.
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Zhang J., Fan X., Hu Y., Zhou X., He Q., Liang L., Xing Y.
J Integr Plant Biol 2020
Global analysis of CCT family knockout mutants identifies four genes involved in regulating heading date in rice.
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Phule A.S., Barbadikar K.M., Madhav M.S., Senguttuvel P., Babu MBBP., Ananda Kumar P.
3 Biotech 2018 8(9) 383
Genes encoding membrane proteins showed stable expression in rice under aerobic condition: novel set of reference genes for expression studies.
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Morita R., Sugino M., Hatanaka T., Misoo S., Fukayama H.
Plant Physiol. 2015 167(4) 1321-31
CO2-Responsive CONSTANS, CONSTANS-Like, and Time of Chlorophyll a/b Binding Protein Expression1 Protein Is a Positive Regulator of Starch Synthesis in Vegetative Organs of Rice.
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Zhang L., Li Q., Dong H., He Q., Liang L., Tan C., Han Z., Yao W., Li G., Zhao H., Xie W., Xing Y.
Sci Rep 2015 5 7663
Three CCT domain-containing genes were identified to regulate heading date by candidate gene-based association mapping and transformation in rice.
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Zhang Y.M., Yan Y.S., Wang L.N., Yang K., Xiao N., Liu Y.F., Fu Y.P., Sun Z.X., Fang R.X., Chen X.Y.
Mol Plant 2012 5(1) 63-72
A Novel Rice Gene, NRR Responds to Macronutrient Deficiency and Regulates Root Growth.
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Cockram J., Thiel T., Steuernagel B., Stein N., Taudien S., Paul C Bailey, Donal M O'Sullivan
PLoS ONE 2012 7(9) e45307
Genome dynamics explain the evolution of flowering time CCT domain gene families in the Poaceae.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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response to nutrient levels( GO:0031667 )
nitrogen utilization( GO:0019740 )
positive regulation of transcription, DNA-dependent( GO:0045893 )
nucleus( GO:0005634 )
regulation of starch biosynthetic process( GO:0010581 )
response to sucrose stimulus( GO:0009744 )
response to glucose stimulus( GO:0009749 )
circadian rhythm( GO:0007623 )
response to carbon dioxide( GO:0010037 )
response to oxygen levels( GO:0070482 )
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Trait Ontology
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tiller angle( TO:0000567 )
starch content( TO:0000696 )
oxygen sensitivity( TO:0000015 )
nitrogen sensitivity( TO:0000011 )
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Plant Ontology
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leaf sheath( PO:0020104 )
leaf( PO:0025034 )
phloem( PO:0005417 )
vascular bundle( PO:0005020 )
stem internode( PO:0020142 )
mesophyll cell( PO:0004006 )
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Related Strains
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Phenotype images
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Last updated
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Jan 9, 2024
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Update info.