Update info.Gene - Detail
Detail of Gene
| Basic Information | |
|---|---|
| CGSNL Gene Symbol | TSC1 |
| Gene Symbol Synonym | ABCI7, OsABCI7, OsABCI7_1, OsABCI7_2, OsABCI8, ABCI8, OsABCI8.1, OsABCI8.2, OsCNL1, CNL1, OsTSC1, TSC1.1, TSC1.2 |
| CGSNL Gene Name | TRANSPLANT-SENSITIVE CHLOROPLAST-DEFICIENT 1 |
| Gene Name Synonym | ABC transporter superfamily ABCI subgroup member 7, chlorotic and necrotic leaf1, transplant-sensitive chloroplast-deficient 1 |
| Protein Name | ABC TRANSPORTER I FAMILY MEMBER 7 |
| Allele | abci8, cnl1, tsc1 |
| Chromosome No. | 11 |
| Explanation | OsABCI8 in Zeng et al. 2017, Li et al. 2020. TO:0020089: iron content. TO:0006060: copper content trait. leaf chlorosis. GO:2000377: regulation of reactive oxygen species metabolic process. |
| Trait Class |
Vegetative organ - Leaf
Coloration - Chlorophyll Coloration - Others Tolerance and resistance - Stress tolerance |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. |
AK106821
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| MSU ID |
LOC_Os11g29850.1
LOC_Os11g29850.2 |
| RAP ID |
Os11g0490800 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
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INSD Accession List (Test version) |
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| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
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Song J., Yang H., Qiao C., Zhu C., Bai T., Du H., Ma S., Wang N., Luo C., Zhang Y., Ma T., Li P., Tian L.
Front Plant Sci 2023 14 1095929 Natural variations of chlorophyll fluorescence and ion transporter genes influenced the differential response of <i>japonica</i> rice germplasm with different salt tolerances.
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Li H., Liu Y., Qin H., Lin X., Tang D., Wu Z., Luo W., Shen Y., Dong F., Wang Y., Feng T., Wang L., Li L., Chen D., Zhang Y., Murray J.D., Chao D., Chong K., Cheng Z., Meng Z.
New Phytol. 2020 A rice chloroplast-localized ABC transporter arg1 modulates cobalt and nickel homeostasis and contributes to photosynthetic capacity.
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He Y., Shi Y., Zhang X., Xu X., Wang H., Li L., Zhang Z., Shang H., Wang Z., Jian-Li Wu
Plant Physiol. 2020 184(1) 283-299 The OsABCI7 Transporter Interacts with OsHCF222 to Stabilize the Thylakoid Membrane in Rice.
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Shi X., Chen S., Peng Y., Wang Y., Chen J., Hu Z., Wang B., Li A., Chao D., Li Y., Teng S.
J Integr Plant Biol 2018 60(2) 112-129 TSC1 enables plastid development under dark conditions, contributing to rice adaptation to transplantation shock.
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Zeng X., Tang R., Guo H., Ke S., Teng B., Hung Y.H., Xu Z., Xie X.M., Hsieh T.F., Zhang X.Q.
Plant Mol. Biol. 2017 A naturally occurring conditional albino mutant in rice caused by defects in the plastid-localized OsABCI8 transporter.
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Paul J Verrier, Bird D., Burla B., Dassa E., Forestier C., Geisler M., Klein M., Kolukisaoglu U., Lee Y., Martinoia E., Murphy A., Philip A Rea, Samuels L., Schulz B., Edgar J Spalding, Yazaki K., Frederica L Theodoulou
Trends Plant Sci. 2008 13(4) 151-9 Plant ABC proteins--a unified nomenclature and updated inventory.
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| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
ATP binding( GO:0005524 )
iron ion transport( GO:0006826 ) chloroplast( GO:0009507 ) plastid( GO:0009536 ) response to abiotic stimulus( GO:0009628 ) plastid organization( GO:0009657 ) chloroplast organization( GO:0009658 ) thylakoid membrane organization( GO:0010027 ) chlorophyll biosynthetic process( GO:0015995 ) ATPase activity( GO:0016887 ) programmed cell death( GO:0012501 ) DNA replication( GO:0006260 ) DNA repair( GO:0006281 ) response to DNA damage stimulus( GO:0006974 ) membrane lipid catabolic process( GO:0046466 ) unidimensional cell growth( GO:0009826 ) thylakoid membrane( GO:0042651 ) response to absence of light( GO:0009646 ) metal ion homeostasis( GO:0055065 ) copper ion homeostasis( GO:0055070 ) response to light intensity( GO:0009642 ) tetrapyrrole metabolic process( GO:0033013 ) iron ion homeostasis( GO:0055072 ) photosynthesis( GO:0015979 ) necrotic cell death( GO:0070265 ) response to cold( GO:0009409 ) response to salt stress( GO:0009651 ) |
| Trait Ontology |
leaf color( TO:0000326 )
chlorophyll-a content( TO:0000293 ) chlorophyll-b content( TO:0000295 ) carotenoid content( TO:0000496 ) chloroplast development trait( TO:0002715 ) abiotic stress trait( TO:0000168 ) leaf necrosis( TO:0000652 ) photosynthetic ability( TO:0000316 ) cold tolerance( TO:0000303 ) net photosynthetic rate( TO:0001027 ) transpiration rate( TO:0001018 ) internode length( TO:0000145 ) plant height( TO:0000207 ) growth and development trait( TO:0000357 ) hydrogen peroxide content( TO:0000605 ) light intensity sensitivity( TO:0000460 ) salt tolerance( TO:0006001 ) |
| Plant Ontology |
leaf( PO:0025034 )
whole plant( PO:0000003 ) |
| Related Strains | |
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| Phenotype images | |
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| Last updated | |
| Jun 26, 2023 | |
