Gene - Detail

Detail of Gene

Click here for feedback

Basic Information
CGSNL Gene Symbol GS5
Gene Symbol Synonym OsSCP26, SCP26, OsGS5
CGSNL Gene Name GRAIN SIZE 5
Gene Name Synonym serine carboxypeptidase 26, Grain Size 5
Protein Name SERINE CARBOXYPEPTIDASE 26
Allele GS5-1, GS5-2, GS5-WG , GS5-MG, GS5-NG, GS5-A, GS5-B
Chromosome No. 5
Explanation JN256055(H94 mRNA), JN256056(Zhenshan 97 mRNA), JN256057(H94 Genomic DNA), JN256058(Zhenshan 97, Genomic DNA). SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml
Trait Class Biochemical character
Character as QTL - Grain quality
Seed - Morphological traits - Grain shape
Character as QTL - Yield and productivity
Expression
Sequence/Locus
cDNA Accession No. AK106800
MSU ID LOC_Os05g06660.1
LOC_Os05g06660.2
RAP ID Os05g0158500
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
-
Map
Locate(cM)
Link map Classical linkage map
References
Abbai R., Singh V.K., Nachimuthu V.V., Sinha P., Selvaraj R., Vipparla A.K., Singh A.K., Singh U.M., Varshney R.K., Kumar A.
Plant Biotechnol. J. 2019   
Haplotype analysis of key genes governing grain yield and quality traits across 3K RG panel reveals scope for the development of tailor-made rice with enhanced genetic gains.
Qin R., Zeng D., Yang C., Akhter D., Alamin M., Jin X., Shi C.
Genes (Basel) 2018  9(6) 
<i>LTBSG1</i>, a New Allele of <i>BRD2</i>, Regulates Panicle and Grain Development in Rice by Brassinosteroid Biosynthetic Pathway.
Gong R., Cao H., Zhang J., Xie K., Wang D., Yu S.
Plant J. 2018  94(1)  32-47
Divergent functions of the GAGA-binding transcription factor family in rice.
Ngangkham U., Samantaray S., Yadav M.K., Kumar A., Chidambaranathan P., Katara J.L.
PLoS ONE 2018  13(1)  e0190684
Effect of multiple allelic combinations of genes on regulating grain size.in rice.
Cui D., Tang C., Li J., A X., Yu T., Ma X., Zhang E., Wang Y., Cao G., Xu F., Dai L., Han L., Koh H.J.
PLoS ONE 2017  12(4)  e0175731
Genetic structure and isolation by altitude in rice landraces of Yunnan, China revealed by nucleotide and microsatellite marker polymorphisms.
Kim S.R., Ramos J., Ashikari M., Virk P.S., Torres E.A., Nissila E., Hechanova S.L., Mauleon R., Jena K.K.
Rice (N Y) 2016  9(1)  12
Development and validation of allele-specific SNP/indel markers for eight yield-enhancing genes using whole-genome sequencing strategy to increase yield potential of rice, Oryza sativa L.
Sun P., Zhang W., Wang Y., He Q., Shu F., Liu H., Wang J., Wang J., Yuan L., Deng H.
J Integr Plant Biol 2016   
OsGRF4 controls grain shape, panicle length and seed shattering in rice.
Xu C., Liu Y., Li Y., Xu X., Xu C., Li X., Xiao J., Zhang Q.
J. Exp. Bot. 2015  66(9)  2611-23
Differential expression of GS5 regulates grain size.in rice.
Ikeda M., Miura K., Aya K., Kitano H., Matsuoka M.
Curr. Opin. Plant Biol. 2013  16(2)  213-20
Genes offering the potential for designing yield-related traits in rice.
Li,Y., Fan,C., Xing,Y., Jiang,Y., Luo,L., Sun,L., Shao,D., Xu,C., Li,X., Xiao,J., He,Y. and Zhang,Q.
Nat. Genet. 2011  43(12)  1266-1269
Natural variation in GS5 plays an important role in regulating grain size and yield in rice
Ouyang S., Zhu W., Hamilton J., Lin H., Campbell M., Childs K., Françoise Thibaud-Nissen, Renae L Malek, Lee Y., Zheng L., Orvis J., Haas B., Wortman J., C Robin Buell
Nucleic Acids Res. 2007  35(Database issue)  D883-7
The TIGR Rice Genome Annotation Resource: improvements and new features.
Lokesh P Tripathi, R Sowdhamini
BMC Genomics 2006  7  200
Cross genome comparisons of serine proteases in Arabidopsis and rice.
TextPresso Search Search textpresso for GS5 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology serine-type carboxypeptidase activity( GO:0004185 )
proteolysis( GO:0006508 )
Trait Ontology grain size( TO:0000397 )
grain weight( TO:0000590 )
seed maturation( TO:0002661 )
grain width( TO:0000402 )
grain length( TO:0000734 )
Plant Ontology -
Related Strains
-
Phenotype images
-
Last updated
Sep 3, 2019


Login ID
Password
/rice/oryzabase