Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol _
Gene Symbol Synonym ROMT-16, ROMT16, COA1, CCoAOMT-1, OsCCoAOMT-1, OsCCoAOMT1, CCoAOMT1, OsROMT-16, OsROMT16, OsCOA1
CGSNL Gene Name _
Gene Name Synonym O-methyltransferase ROMT16, caffeoyl CoA O-methyltransferase 1
Protein Name
Allele
Chromosome No. 6
Explanation
Trait Class Biochemical character
Coloration - Anthocyanin
Expression
Sequence/Locus
cDNA Accession No. AK065744
MSU ID LOC_Os06g06980.1
LOC_Os06g06980.3
RAP ID Os06g0165800
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Shad M.A., Li X., Rao M.J., Luo Z., Li X., Ali A., Wang L.
Int J Mol Sci 2024  25(18) 
Exploring Lignin Biosynthesis Genes in Rice: Evolution, Function, and Expression.
Chen X., Tao Y., Ali A., Zhuang Z., Guo D., Guo Q., Riaz A., Zhang H., Xu P., Liao Y., Wang J., Sun C., Xiang Q., Wu X.
Int J Mol Sci 2019  20(10) 
Transcriptome and Proteome Profiling of Different Colored Rice Reveals Physiological Dynamics Involved in the Flavonoid Pathway.
Kishi-Kaboshi M., Seo S., Takahashi A., Hirochika H.
Plant Cell Physiol. 2018  59(5)  903-915
The MAMP-Responsive MYB Transcription Factors MYB30, MYB55 and MYB110 Activate the HCAA Synthesis Pathway and Enhance Immunity in Rice.
Koshiba T.a, Hirose N.a, Mukai M.a, Yamamura M.a, Hattori T.a d, Suzuki S.a, Sakamoto M.b, Umezawa T.a c
Plant Biotechnology 2013  30  157-167
Characterization of 5-hydroxyconiferaldehyde O-methyltransferase in Oryza sativa
Lee YJ,Kim BG,Chong Y,Lim Y,Ahn JH
Planta. 2008  227  641-7
Cation dependent O-methyltransferases from rice.
DB Reference
Gramene ID -
Ontologies
Gene Ontology coumarin biosynthetic process( GO:0009805 )
caffeoyl-CoA O-methyltransferase activity( GO:0042409 )
response to cadmium ion( GO:0046686 )
lignan biosynthetic process( GO:0009807 )
flavonoid biosynthetic process( GO:0009813 )
Trait Ontology lignin content( TO:0000731 )
lignin biosynthesis trait( TO:0000733 )
Plant Ontology whole plant( PO:0000003 )
Related Strains
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Phenotype images
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Last updated
Dec 12, 2024

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