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Basic Information
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CGSNL Gene Symbol
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DDM1B
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Gene Symbol Synonym
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OsDDM1b, DDM1b, DDM1, DLN98, OsDLN98, CHR741, OsCHR741
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CGSNL Gene Name
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DECREASE IN DNA METHYLATION 1B
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Gene Name Synonym
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Decrease in DNA Methylation 1b, Deficient in DNA Methylation 1b, DECREASE IN DNA METHYLATION1b, DLN repressor 98, DLN motif protein 98, chromatin remodeling factor 741
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Protein Name
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DLN REPRESSOR 98
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Allele
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ddm1b, osddm1b
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Chromosome No.
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3
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Explanation
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similar to Arabidopsis DDM1. DDM1 in Li et al. 2017. SWI/SNF chromatin remodeler. GO:0080188: RNA-directed DNA methylation. GO:0140658: ATP-dependent chromatin remodeler activity.
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Trait Class
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Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Other
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Expression
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Sequence/Locus
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cDNA Accession No.
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CT835129
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MSU ID
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LOC_Os03g51230.1
LOC_Os03g51230.2
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RAP ID
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Os03g0722400
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Akinmusola R.Y., Wilkins C.A., Doughty J.
Plants (Basel) 2023 12(3)
DDM1-Mediated TE Silencing in Plants.
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Guo M., Zhao H., He Z., Zhang W., She Z., Mohammadi M.A., Shi C., Yan M., Tian D., Qin Y.
Front Plant Sci 2022 13 910663
Comparative Expression Profiling of Snf2 Family Genes During Reproductive Development and Stress Responses in Rice.
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Singh P., Mathew I.E., Verma A., Tyagi A.K., Agarwal P.
Int J Mol Sci 2019 20(7)
Analysis of Rice Proteins with DLN repressor Motif/S.
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Tan F., Lu Y., Jiang W., Wu T., Zhang R., Zhao Y., Zhou D.X.
Plant Physiol. 2018 177(3) 1187-1197
DDM1 Represses Noncoding RNA Expression and RNA-Directed DNA Methylation in Heterochromatin.
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Li S., Xia Q., Wang F., Yu X., Ma J., Kou H., Lin X., Gao X., Liu B.
Front Plant Sci 2017 8 363
Laser Irradiation-Induced DNA Methylation Changes Are Heritable and Accompanied with Transpositional Activation of mPing in Rice.
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Tan F., Zhou C., Zhou Q., Zhou S., Yang W., Zhao Y., Li G., Zhou D.X.
Plant Physiol. 2016 171(3) 2041-54
Analysis of Chromatin Regulators Reveals Specific Features of Rice DNA Methylation Pathways.
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Higo H., Tahir M., Takashima K., Miura A., Watanabe K., Tagiri A., Ugaki M., Ishikawa R., Eiguchi M., Kurata N., Sasaki T., Richards E., Takano M., Kishimoto N., Kakutani T., Habu Y.
Mol. Genet. Genomics 2012 287(10) 785-92
DDM1 (Decrease in DNA Methylation) genes in rice (Oryza sativa).
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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DNA methylation on cytosine within a CG sequence( GO:0010424 )
DNA methylation on cytosine within a CNG sequence( GO:0010425 )
DNA methylation on cytosine within a CHH sequence( GO:0010426 )
ATP binding( GO:0005524 )
regulation of DNA methylation( GO:0044030 )
DNA binding( GO:0003677 )
DNA-dependent ATPase activity( GO:0008094 )
nucleus( GO:0005634 )
defense response to fungus( GO:0050832 )
response to water deprivation( GO:0009414 )
response to salt stress( GO:0009651 )
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Trait Ontology
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salt tolerance( TO:0006001 )
drought tolerance( TO:0000276 )
blast disease( TO:0000074 )
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Plant Ontology
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-
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Related Strains
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Phenotype images
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Last updated
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Jun 28, 2023
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Update info.