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Basic Information
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CGSNL Gene Symbol
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DDM1A
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Gene Symbol Synonym
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OsDDM1a, DDM1a, DLN225, OsDLN225, CHR746, OsCHR746
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CGSNL Gene Name
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DECREASE IN DNA METHYLATION 1A
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Gene Name Synonym
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Decrease in DNA Methylation 1a, Deficient in DNA Methylation 1a, DECREASE IN DNA METHYLATION1a, DLN repressor 225, DLN motif protein 225, chromatin remodeling factor 746
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Protein Name
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DLN REPRESSOR 225
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Allele
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ddm1a, osddm1a
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Chromosome No.
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9
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Explanation
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similar to Arabidopsis DDM1. GO:0080188: RNA-directed DNA methylation. GO:0140658: ATP-dependent chromatin remodeler activity.
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Trait Class
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Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Other
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Expression
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Sequence/Locus
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cDNA Accession No.
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AB177378
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MSU ID
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LOC_Os09g27060.1
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RAP ID
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Os09g0442700
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Akinmusola R.Y., Wilkins C.A., Doughty J.
Plants (Basel) 2023 12(3)
DDM1-Mediated TE Silencing in Plants.
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Guo M., Zhao H., He Z., Zhang W., She Z., Mohammadi M.A., Shi C., Yan M., Tian D., Qin Y.
Front Plant Sci 2022 13 910663
Comparative Expression Profiling of Snf2 Family Genes During Reproductive Development and Stress Responses in Rice.
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Singh P., Mathew I.E., Verma A., Tyagi A.K., Agarwal P.
Int J Mol Sci 2019 20(7)
Analysis of Rice Proteins with DLN repressor Motif/S.
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Tan F., Lu Y., Jiang W., Wu T., Zhang R., Zhao Y., Zhou D.X.
Plant Physiol. 2018 177(3) 1187-1197
DDM1 Represses Noncoding RNA Expression and RNA-Directed DNA Methylation in Heterochromatin.
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Tan F., Zhou C., Zhou Q., Zhou S., Yang W., Zhao Y., Li G., Zhou D.X.
Plant Physiol. 2016 171(3) 2041-54
Analysis of Chromatin Regulators Reveals Specific Features of Rice DNA Methylation Pathways.
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Jung K.H., Kim S.R., Giong H.K., Nguyen M.X., Go H.J., An G.
Mol Plant 2014
Genome-wide Identification and Functional Analysis of Genes Expressed Ubiquitously in Rice.
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Higo H., Tahir M., Takashima K., Miura A., Watanabe K., Tagiri A., Ugaki M., Ishikawa R., Eiguchi M., Kurata N., Sasaki T., Richards E., Takano M., Kishimoto N., Kakutani T., Habu Y.
Mol. Genet. Genomics 2012 287(10) 785-92
DDM1 (Decrease in DNA Methylation) genes in rice (Oryza sativa).
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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DNA binding( GO:0003677 )
ATP binding( GO:0005524 )
DNA methylation on cytosine within a CHH sequence( GO:0010426 )
DNA methylation on cytosine within a CNG sequence( GO:0010425 )
DNA methylation on cytosine within a CG sequence( GO:0010424 )
regulation of DNA methylation( GO:0044030 )
DNA-dependent ATPase activity( GO:0008094 )
nucleus( GO:0005634 )
defense response to fungus( GO:0050832 )
response to salt stress( GO:0009651 )
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Trait Ontology
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salt tolerance( TO:0006001 )
blast disease( TO:0000074 )
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Plant Ontology
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-
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Related Strains
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-
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Phenotype images
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-
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Last updated
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Jun 28, 2023
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Update info.