Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol LC2
Gene Symbol Synonym OsLC2, OsVIL2, VIL2, OsVIL3
Gene Name Synonym leaf inclination2, Leaf Inclination 2, VIN3-LIKE 2, VERNALIZATION INSENSITIVE 3-LIKE 2, VERNALIZATION INSENSITIVE 3-LIKE 3
Protein Name
Allele lc2, lc2-1, lc2-2, lc2-3, osvil2, osvil2-1, osvil2-2
Chromosome No. 2
Explanation a VIN3-like protein. OsVIL3 in Wang et al. 2013. a possible component of PRC2 complex. Chromatin interacting factor.
Trait Class Vegetative organ - Leaf
Reproductive organ - Heading date
Character as QTL - Yield and productivity
cDNA Accession No. AK101341
MSU ID LOC_Os02g05840.1
RAP ID Os02g0152500
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Abbai R., Singh V.K., Nachimuthu V.V., Sinha P., Selvaraj R., Vipparla A.K., Singh A.K., Singh U.M., Varshney R.K., Kumar A.
Plant Biotechnol. J. 2019   
Haplotype analysis of key genes governing grain yield and quality traits across 3K RG panel reveals scope for the development of tailor-made rice with enhanced genetic gains.
Yang J., Cho L.H., Yoon J., Yoon H., Wai A.H., Hong W.J., Han M., Sakakibara H., Liang W., Jung K.H., Jeon J.S., Koh H.J., Zhang D., An G.
Plant Biotechnol. J. 2018   
Chromatin interacting factor OsVIL2 increases biomass and rice grain yield.
Xu P., Ali A., Han B., Wu X.
Front Plant Sci 2018  9  1528
Current Advances in Molecular Basis and Mechanisms Regulating Leaf Morphology in Rice.
Jeong H.J., Yang J., Cho L.H., An G.
Plant Cell Rep. 2016  35(4)  905-20
OsVIL1 controls flowering time in rice by suppressing OsLF under short days and by inducing Ghd7 under long days.
Yang S.Q., Li W.Q., Miao H., Gan P.F., Qiao L., Chang Y.L., Shi C.H., Chen K.M.
Rice (N Y) 2016  9(1)  37
rel2, A Gene Encoding An Unknown Function Protein which Contains DUF630 and DUF632 Domains Controls leaf rolling in Rice.
Zhang C., Bai M.Y., Chong K.
Plant Cell Rep. 2014  33(5)  683-96
Brassinosteroid-mediated regulation of agronomic traits in rice.
Yang J., Lee S., Hang R., Kim S.R., Lee Y.S., Cao X., Amasino R., An G.
Plant J. 2013  73(4)  566-78
OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice.
Wang J., Hu J., Qian Q., Xue H.W.
Mol Plant 2013  6(2)  514-27
LC2 and OsVIL2 promote rice flowering by photoperoid-induced epigenetic silencing of OsLF.
Shu-Qing Zhao, Hu J., Long-Biao Guo, Qian Q., Hong-Wei Xue
Cell Res. 2010  20(8)  935-47
Rice leaf inclination2, a VIN3-like protein, regulates leaf angle through modulating cell division of the collar.
TextPresso Search Search textpresso for LC2 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology regulation of photoperiodism, flowering( GO:2000028 )
response to auxin stimulus( GO:0009733 )
response to abscisic acid stimulus( GO:0009737 )
response to gibberellin stimulus( GO:0009739 )
response to brassinosteroid stimulus( GO:0009741 )
regulation of cell division( GO:0051302 )
Trait Ontology leaf angle( TO:0000206 )
abscisic acid sensitivity( TO:0000615 )
gibberellic acid sensitivity( TO:0000166 )
flowering time( TO:0002616 )
days to heading( TO:0000137 )
auxin sensitivity( TO:0000163 )
brassinosteroid sensitivity( TO:0002677 )
grain yield( TO:0000396 )
total biomass yield( TO:0000457 )
panicle size( TO:0006032 )
filled grain number( TO:0000447 )
primary branch number( TO:0000547 )
secondary branch number( TO:0000557 )
Plant Ontology -
Related Strains
Phenotype images
Last updated
Sep 3, 2019