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Basic Information
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CGSNL Gene Symbol
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MIR168A
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Gene Symbol Synonym
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miR168a, osa-miR168a, osa-MIR168a osa-miR168a-3p osa-miR168a-5p, OsMIR168a
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CGSNL Gene Name
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MICRORNA168A
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Gene Name Synonym
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MICRORNA168a, osa-miRNA168a
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Protein Name
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_
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Allele
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Chromosome No.
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2
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Explanation
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miRBASE accession: MI0001115. AY551239. LM381727, LM379327. GO:0090559: regulation of membrane permeability.
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Trait Class
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Vegetative organ - Culm
Reproductive organ - Heading date
Reproductive organ - panicle
Seed - Morphological traits - Grain shape
Seed - Physiological traits
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Reproductive organ - Spikelet, flower, glume, awn
Other
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Expression
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Sequence/Locus
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cDNA Accession No.
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-
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MSU ID
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-
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RAP ID
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-
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Links
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INSD Accession List
(Test version)
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Zhou J., Zhang R., Jia X., Tang X., Guo Y., Yang H., Zheng X., Qian Q., Qi Y., Zhang Y.
Plant Biotechnol. J. 2022 20(2) 310-322
CRISPR-Cas9 mediated OsMIR168a knockout reveals its pleiotropy in rice.
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Kansal S., Panwar V., Mutum R.D., Raghuvanshi S.
Front Plant Sci 2021 12 720009
Investigations on Regulation of MicroRNAs in Rice Reveal [Ca2+]cyt Signal Transduction Regulated MicroRNAs.
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Zhou Y., Zhou S., Wang L., Wu D., Cheng H., Du X., Mao D., Zhang C., Jiang X.
J Integr Plant Biol 2019
miR164c and miR168a regulate seed vigor in rice.
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Zhang D., Liu M., Tang M., Dong B., Wu D., Zhang Z., Zhou B.
Plant Sci. 2015 237 24-32
Repression of microRNA biogenesis by silencing of OsDCL1 activates the basal resistance to Magnaporthe oryzae in rice.
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Shen W.J., Ruan X.L., Li X.S., Zhao Q., Li H.P.
Arch. Virol. 2012 157(8) 1531-9
RNA silencing suppressor Pns11 of rice gall dwarf virus induces virus-like symptoms in transgenic rice.
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Ding Y., Chen Z., Zhu C.
J. Exp. Bot. 2011 62(10) 3563-73
Microarray-based analysis of cadmium-responsive microRNAs in rice (Oryza sativa).
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Kozomara,A. and Griffiths-Jones,S.
Nucleic Acids Res. 2011 39 D152-D157
miRBase: integrating microRNA annotation and deep-sequencing data
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Jeong D.H., Park S., Zhai J., Gurazada S.G., De Paoli E., Meyers B.C., Green P.J.
Plant Cell 2011 23(12) 4185-207
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.
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Li,Y., Li,W. and Jin,Y.X.
Acta Biochim. Biophys. Sin. (Shanghai) 2005 37 (2) 75-87
Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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mRNA cleavage( GO:0006379 )
RNA-induced silencing complex( GO:0016442 )
micro-ribonucleoprotein complex( GO:0035068 )
gene silencing by miRNA( GO:0035195 )
defense response to fungus( GO:0050832 )
response to cadmium ion( GO:0046686 )
photoperiodism, flowering( GO:0048573 )
response to abscisic acid stimulus( GO:0009737 )
calcium-mediated signaling( GO:0019722 )
response to water deprivation( GO:0009414 )
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Trait Ontology
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blast disease( TO:0000074 )
seed viability( TO:0000345 )
germination ratio( TO:0000202 )
tiller number( TO:0000346 )
plant height( TO:0000207 )
spikelet anatomy and morphology trait( TO:0000657 )
seed size( TO:0000391 )
flowering time( TO:0002616 )
days to heading( TO:0000137 )
panicle number( TO:0000152 )
panicle size( TO:0006032 )
spikelet length( TO:0002768 )
grain number( TO:0002759 )
filled grain number( TO:0000447 )
seed length( TO:0000146 )
seed width( TO:0000149 )
1000-dehulled grain weight( TO:0000592 )
abscisic acid sensitivity( TO:0000615 )
drought tolerance( TO:0000276 )
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Plant Ontology
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-
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Related Strains
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Phenotype images
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Last updated
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Jul 15, 2022
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Update info.