Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol _
Gene Symbol Synonym OsBBX13, BBX13, OsRIP1, RIP1
CGSNL Gene Name _
Gene Name Synonym B-box-containing protein 13, OsRE1-INTERACTING PROTEIN 1, RE1-INTERACTING PROTEIN 1
Protein Name
Allele Osrip1
Chromosome No. 4
Explanation CT830169. HQ858844. AP2-EREBP transcription factor. GO:2000028: regulation of photoperiodism, flowering.
Trait Class Vegetative organ - Culm
Reproductive organ - Heading date
Reproductive organ - panicle
Character as QTL - Yield and productivity
Other
Expression
Sequence/Locus
cDNA Accession No. AK061333
MSU ID LOC_Os04g45690.1
RAP ID Os04g0540200
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Chai J., Zhu S., Li C., Wang C., Cai M., Zheng X., Zhou L., Zhang H., Sheng P., Wu M., Jin X., Cheng Z., Zhang X., Lei C., Ren Y., Lin Q., Zhou S., Guo X., Wang J., Zhao Z., Wan J.
Plant Biotechnol. J. 2020   
Osre1 interacts with OsRIP1 to regulate rice heading date by finely modulating Ehd1 expression.
Shalmani A., Jing X.Q., Shi Y., Muhammad I., Zhou M.R., Wei X.Y., Chen Q.Q., Li W.Q., Liu W.T., Chen K.M.
BMC Genomics 2019  20(1)  27
Characterization of B-BOX gene family and their expression profiles under hormonal, abiotic and metal stresses in Poaceae plants.
Huang J., Zhao X., Weng X., Wang L., Xie W.
PLoS ONE 2012  7(10)  e48242
The rice B-box zinc finger gene family: genomic identification, characterization, expression profiling and diurnal analysis.
Yilmaz,A., Nishiyama,M.Y. Jr., Fuentes,B.G., Souza,G.M., Janies,D., Gray,J. and Grotewold,E.
Plant Physiol. 2009  149(1)  171-180
GRASSIUS: a platform for comparative regulatory genomics across the grasses
DB Reference
Gramene ID -
Ontologies
Gene Ontology intracellular( GO:0005622 )
zinc ion binding( GO:0008270 )
photoperiodism, flowering( GO:0048573 )
circadian rhythm( GO:0007623 )
Trait Ontology days to heading( TO:0000137 )
flowering time( TO:0002616 )
plant height( TO:0000207 )
panicle length( TO:0000040 )
filled grain number( TO:0000447 )
Plant Ontology shoot system( PO:0009006 )
leaf( PO:0025034 )
flowering stage( PO:0007616 )
Related Strains
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Phenotype images
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Last updated
Feb 1, 2021

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