Update info.Gene - Detail
Detail of Gene
| Basic Information | |
|---|---|
| CGSNL Gene Symbol | PHS3 |
| Gene Symbol Synonym | OsCRTISO, MHZ5, MHZ5/CRTISO, CRTISO |
| CGSNL Gene Name | PRE-HARVEST SPROUTING 3 |
| Gene Name Synonym | carotenoid isomerase, Pre-harvest sprouting 3 |
| Protein Name | PRE-HARVEST SPROUTING 3 |
| Allele | mhz5, mhz5-1, mhz5-2, mhz5-3, mhz5-4, phs3, Osphs3-1, phs3-1,phs3-2, phs3-5, phs3-12, phs3-13, phs3-15, phs3-18 |
| Chromosome No. | 11 |
| Explanation | GO:2000280: regulation of root development. TO:0020083: stem diameter. GO:1904143: positive regulation of carotenoid biosynthetic process. TO:0020119: violaxanthin content. TO:0020078: zeaxanthin content. |
| Trait Class |
Biochemical character
Vegetative organ - Root Coloration - Others Tolerance and resistance - Stress tolerance Character as QTL - Plant growth activity Character as QTL - Germination |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. |
EF417892
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| MSU ID |
LOC_Os11g36440.1
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| RAP ID |
Os11g0572700 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
|
INSD Accession List (Test version) |
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| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
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Jung Y.J., Go J., Kim J.Y., Lee H.J., Kim J.H., Lee H.M., Cho Y.G., Kang K.K.
Plants (Basel) 2025 14(3) ABA and Pre-Harvest Sprouting Differences in Knockout Lines of OsPHS3 Encoding Carotenoid Isomerase via CRISPR/Cas9 in Rice.
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Sun L., Di D.W., Li G., Kronzucker H.J., Wu X., Shi W.
J. Exp. Bot. 2020 Endogenous ABA Alleviates Rice Ammonium Toxicity by Reducing ROS and Free Ammonium via Regulation of the SAPK9-bZIP20 Pathway.
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Yin C.C., Ma B., Collinge D.P., Pogson B.J., He S.J., Xiong Q., Duan K.X., Chen H., Yang C., Lu X., Wang Y.Q., Zhang W.K., Chu C.C., Sun X.H., Fang S., Chu J.F., Lu T.G., Chen S.Y., Zhang J.S.
Plant Cell 2015 27(4) 1061-81 Ethylene responses in rice roots and coleoptiles are differentially regulated by a carotenoid isomerase-mediated abscisic Acid pathway.
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Du H., Wu N., Fu J., Wang S., Li X., Xiao J., Xiong L.
J. Exp. Bot. 2012 63(18) 6467-80 A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice.
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Jun Fang, Chenglin Chai, Qian Qian, Chunlai Li, Jiuyou Tang, Lei Sun, Zejun Huang, Xiaoli Guo, Changhui Sun, Min Liu, Yan Zhang, Qingtao Lu, Yiqin Wang, Congming Lu, Bin Han, Fan Chen, Zhukuan Cheng, and Chengcai Chu
Plant J. 2008 54 177-189 Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice
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| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
chloroplast( GO:0009507 )
carotenoid biosynthetic process( GO:0016117 ) carotenoid isomerase activity( GO:0046608 ) root development( GO:0048364 ) response to ammonium ion( GO:0060359 ) ethylene biosynthetic process( GO:0009693 ) ethylene mediated signaling pathway( GO:0009873 ) abscisic acid mediated signaling( GO:0009738 ) response to ethylene stimulus( GO:0009723 ) seed germination on parent plant( GO:0048623 ) |
| Trait Ontology |
ethylene sensitivity( TO:0000173 )
abscisic acid content( TO:0002667 ) root development trait( TO:0000656 ) relative root length( TO:0000516 ) root fresh weight( TO:0000578 ) vivipary( TO:0000619 ) plant height( TO:0000207 ) panicle length( TO:0000040 ) seed size( TO:0000391 ) seed weight( TO:0000181 ) carotenoid content( TO:0000496 ) tiller number( TO:0000346 ) leaf color( TO:0000326 ) chlorophyll-a content( TO:0000293 ) chlorophyll-b content( TO:0000295 ) alpha carotene content( TO:0002696 ) beta-carotene content( TO:0002695 ) lutein content( TO:0002701 ) carotene content( TO:0000289 ) lycopene content( TO:0002699 ) |
| Plant Ontology |
4 root elongation stage( PO:0001031 )
coleoptile emergence stage( PO:0007045 ) root development stage( PO:0007520 ) leaf( PO:0025034 ) |
| Related Strains | |
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| Phenotype images | |
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| Last updated | |
| Jun 20, 2025 | |
