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Basic Information
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CGSNL Gene Symbol
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LC1
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Gene Symbol Synonym
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OsGH3-1, GH3-1, OsGH3.1,GH3.1, OsLC1
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CGSNL Gene Name
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LEAF INCLINATION 1
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Gene Name Synonym
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LEAF INCLINATION1, Gretchen Hagen 3 protein 1
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Protein Name
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GRETCHEN HAGEN 3 PROTEIN 1
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Allele
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lc1-D
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Chromosome No.
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1
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Explanation
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Q8LQM5. an IAA-amido synthetase. the counterpart of the Arabidopsis DFL1. the candidate gene for qPP1 (protrusion percentage-associated QTL on chromosome 1). TO:0020106: Indole-3-acetic acid content.
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Trait Class
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Vegetative organ - Leaf
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Character as QTL - Germination
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK063368
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MSU ID
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LOC_Os01g57610.1
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RAP ID
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Os01g0785400
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Wang B., Li M., Chen J., Chen L.
Front Plant Sci 2025 16 1644853
Genome-wide comprehensive analysis the molecular phylogenetic evolution, functional divergence and tissue-specific expression of <i>GH3</i> gene family in <i>Salvia miltiorrhiza, Arabidopsis thaliana</i>, and Oryza sativa.
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Ding X., Shi J., Gui J., Zhou H., Yan Y., Zhu X., Xie B., Liu X., He J.
Plants (Basel) 2024 13(1)
Rice Seed Protrusion Quantitative Trait Loci Mapping through Genome-Wide Association Study.
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Wang S., Han S., Zhou X., Zhao C., Guo L., Zhang J., Liu F., Huo Q., Zhao W., Guo Z., Chen X.
Plant Cell 2023 35(6) 2391-2412
Phosphorylation and ubiquitination of OsWRKY31 are integral to OsMKK10-2-mediated defense responses in rice.
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Suzuki G., Fukuda M., Lucob-Agustin N., Inukai Y., Gomi K.
Plants (Basel) 2022 11(12)
The Mutation of Rice MEDIATOR25, OsMED25, Induces Rice Bacterial Blight Resistance through Altering Jasmonate- and Auxin-Signaling.
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Uzair M., Long H., Zafar S.A., Patil S.B., Chun Y., Li L., Fang J., Zhao J., Peng L., Yuan S., Li X.
Plant Physiol. 2021
Narrow Leaf21, Encoding Ribosomal Protein RPS3A, Controls Leaf Development in Rice.
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Mao C., He J., Liu L., Deng Q., Yao X., Liu C., Qiao Y., Li P., Ming F.
Plant Biotechnol. J. 2020 18(2) 429-442
OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.
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Kong W., Zhong H., Deng X., Gautam M., Gong Z., Zhang Y., Zhao G., Liu C., Li Y.
Plants (Basel) 2019 8(2)
Evolutionary Analysis of <i>GH3</i> Genes in Six <i>Oryza</i> Species/Subspecies and Their Expression under Salinity Stress in <i>Oryza sativa</i> ssp. <i>japonica</i>.
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Zhou L.J., Xiao L.T., Xue H.W.
Plant Physiol. 2017 174(3) 1728-1746
Dynamic Cytology and Transcriptional Regulation of Rice Lamina Joint Development.
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Zhang C., Bai M.Y., Chong K.
Plant Cell Rep. 2014 33(5) 683-96
Brassinosteroid-mediated regulation of agronomic traits in rice.
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Zhao S.Q., Xiang J.J., Xue H.W.
Mol Plant 2013 6(1) 174-87
Studies on the Rice Leaf INCLINATION1 (LC1), an IAA-amido Synthetase, Reveal the Effects of Auxin in Leaf Inclination Control.
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Du H., Wu N., Fu J., Wang S., Li X., Xiao J., Xiong L.
J. Exp. Bot. 2012 63(18) 6467-80
A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice.
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Domingo C,Andres F,Tharreau D,Iglesias DJ,Talon M
Mol. Plant Microbe Interact. 2009 22 201-10
Constitutive expression of OsGH3.1 reduces auxin content and enhances defense response and resistance to a fungal pathogen in rice.
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Jain M., Kaur N., Akhilesh K Tyagi, Jitendra P Khurana
Funct. Integr. Genomics 2006 6(1) 36-46
The auxin-responsive GH3 gene family in rice (Oryza sativa).
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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response to light stimulus( GO:0009416 )
response to auxin stimulus( GO:0009733 )
ligase activity( GO:0016874 )
auxin mediated signaling pathway( GO:0009734 )
brassinosteroid biosynthetic process( GO:0016132 )
auxin homeostasis( GO:0010252 )
response to salt stress( GO:0009651 )
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Trait Ontology
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brassinosteroid sensitivity( TO:0002677 )
auxin sensitivity( TO:0000163 )
leaf angle( TO:0000206 )
auxin content( TO:0002672 )
salt tolerance( TO:0006001 )
germination rate( TO:0000430 )
seedling vigor( TO:0000280 )
seedling height( TO:0000019 )
root length( TO:0000227 )
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Plant Ontology
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seedling( PO:0008037 )
plant callus( PO:0005052 )
inflorescence( PO:0009049 )
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Related Strains
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Phenotype images
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Last updated
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Aug 24, 2026
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Update info.