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Basic Information
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CGSNL Gene Symbol
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MIR408
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Gene Symbol Synonym
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miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408
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CGSNL Gene Name
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MICRORNA408
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Gene Name Synonym
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MICRORNA408
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Protein Name
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_
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Allele
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mir408, mir408-1, mir408-2
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Chromosome No.
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1
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Explanation
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miRBASE accession: MI0001149. LM379354 LM383078. Target gene: Os03g0259100, Os03g0709300, Os08g0482700, Os06g0266400. TO:0000975: grain width. TO:0000817: inflorescence bract length. GO:0120126: response to copper ion starvation. GO:1990110: callus formation.
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Trait Class
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Seed - Morphological traits - Embryo
Seed - Morphological traits - Grain shape
Tolerance and resistance - Stress tolerance
Other
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK108747
AK101374
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MSU ID
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-
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RAP ID
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Os01g0322700
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Tong H., Wang C., Han X., Sun Q., Luo E., Yang C., Xu G., Ou X., Li S., Zhang J., Yang J.
Rice (N Y) 2025 18(1) 50
Multi-omics-Based Construction of ncRNA-Gene-Metabolite Networks Provides New Insights Into Metabolic Regulation Under Salt Stress in Rice.
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Huang Y., Yue E., Lian G., Lu J., Ran L., Ma S., Wang K., Bai Y., Han N., Bian H., Guo F.
Plant J. 2024 120(2) 769-787
Novel mechanism of MicroRNA408 in callus formation from rice mature embryo.
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Zhao W., Xiao W., Sun J., Chen M., Ma M., Cao Y., Cen W., Li R., Luo J.
Plants (Basel) 2022 11(7)
An Integration of MicroRNA and Transcriptome Sequencing Analysis Reveal Regulatory Roles of miRNAs in Response to Chilling Stress in Wild Rice.
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Zhou J., Yuan M., Zhao Y., Quan Q., Yu D., Yang H., Tang X., Xin X., Cai G., Qian Q., Qi Y., Zhang Y.
Plant Biotechnol. J. 2021
Efficient deletion of multiple circle RNA loci by CRISPR-Cas9 reveals Os06circ02797 as a putative sponge for OsMIR408 in rice.
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Navarro B.B., Del Frari BK., Dias PVDC., Lemainski L.E., Mario R.B., Ponte L.R., Goergen A., Tarouco C.P., Neves V.M., Dressler V.L., Fett J.P., Brunetto G., Sperotto R.A., Nicoloso F.T., Ricachenevsky F.K.
Plant Physiol. Biochem. 2021 158 113-124
The copper economy response is partially conserved in rice (Oryza sativa L.).
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Zhu C.L., Xing B., Teng S.Z., Deng C., Shen Z.Y., Ai P.F., Lu T.G., Zhang S.W., Zhang Z.G.
Front Plant Sci 2021 12 760041
OsRELA Regulates Leaf Inclination by Repressing the Transcriptional Activity of OsLIC in Rice.
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Yang X., Zhao X., Dai Z., Ma F., Miao X., Shi Z.
Plant Physiol. 2021
OsmiR396/Growth Regulating Factor modulate rice grain size.through direct regulation of embryo-specific miR408.
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Hang N., Shi T., Liu Y., Ye W., Taier G., Sun Y., Wang K., Zhang W.
Physiol Plant 2020
Overexpression of Os-microRNA408 enhances drought tolerance in perennial ryegrass.
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Liu A., Zhou Z., Yi Y., Chen G.
BMC Genomics 2020 21(1) 127
Transcriptome analysis reveals the roles of stem nodes in cadmium transport to rice grain.
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Zhang F., Zhang Y.C., Zhang J.P., Yu Y., Zhou Y.F., Feng Y.Z., Yang Y.W., Lei M.Q., He H., Lian J.P., Chen Y.Q.
Rice (N Y) 2018 11(1) 60
Rice UCL8, a plantacyanin gene targeted by miR408, regulates fertility by controlling pollen tube germination and growth.
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Zhou J., Deng K., Cheng Y., Zhong Z., Tian L., Tang X., Tang A., Zheng X., Zhang T., Qi Y., Zhang Y.
Front Plant Sci 2017 8 1598
CRISPR-Cas9 Based Genome Editing Reveals New Insights into MicroRNA Function and Regulation in Rice.
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Balyan S., Kumar M., Mutum R.D., Raghuvanshi U., Agarwal P., Mathur S., Raghuvanshi S.
Sci Rep 2017 7(1) 15446
Identification of miRNA-mediated drought responsive multi-tiered regulatory network in drought tolerant rice, Nagina 22.
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Zhang J.P., Yu Y., Feng Y.Z., Zhou Y.F., Zhang F., Yang Y.W., Lei M.Q., Zhang Y.C., Chen Y.Q.
Plant Physiol. 2017 175(3) 1175-1185
miR408 Regulates grain yield and Photosynthesis via a Phytocyanin Protein.
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Tian C., Zuo Z., Qiu J.L.
J Genet Genomics 2015 42(7) 393-402
Identification and Characterization of ABA-Responsive MicroRNAs in Rice.
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Mondal T.K., Ganie S.A.
Gene 2014 535 204-209
Identification and characterization of salt responsive miRNA-SSR markers in rice (oryza sativa)
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Devi S.J., Madhav M.S., Kumar G.R., Goel A.K., Umakanth B., Jahnavi B., Viraktamath B.C.
Gene 2013 531(1) 15-22
Identification of abiotic stress miRNA transcription factor binding motifs (TFBMs) in rice.
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Macovei A., Tuteja N.
BMC Plant Biol. 2012 12 183
microRNAs targeting DEAD-box helicases are involved in salinity stress response in rice (Oryza sativa L.).
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Kozomara,A. and Griffiths-Jones,S.
Nucleic Acids Res. 2011 39 D152-D157
miRBase: integrating microRNA annotation and deep-sequencing data
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Jeong D.H., Park S., Zhai J., Gurazada S.G., De Paoli E., Meyers B.C., Green P.J.
Plant Cell 2011 23(12) 4185-207
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.
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Guo,X., Gui,Y., Wang,Y., Zhu,Q.H., Helliwell,C. and Fan,L.
BMC Genomics. 2008 9(1) 454
Selection and mutation on microRNA target sequences during rice evolution
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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gene silencing by miRNA( GO:0035195 )
mRNA cleavage( GO:0006379 )
response to cadmium ion( GO:0046686 )
micro-ribonucleoprotein complex( GO:0035068 )
RNA-induced silencing complex( GO:0016442 )
seed development( GO:0048316 )
embryonic development ending in seed dormancy( GO:0009793 )
response to water deprivation( GO:0009414 )
response to cold( GO:0009409 )
response to salt stress( GO:0009651 )
phenylpropanoid biosynthetic process( GO:0009699 )
regulation of flavonoid biosynthetic process( GO:0009962 )
auxin mediated signaling pathway( GO:0009734 )
cytokinin mediated signaling( GO:0009736 )
regulation of gibberellin biosynthetic process( GO:0010371 )
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Trait Ontology
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salt sensitivity( TO:0000429 )
grain size( TO:0000397 )
embryo development trait( TO:0000620 )
leaf angle( TO:0000206 )
seed development trait( TO:0000653 )
grain length( TO:0000734 )
drought tolerance( TO:0000276 )
cold tolerance( TO:0000303 )
1000-dehulled grain weight( TO:0000592 )
callus induction( TO:0000428 )
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Plant Ontology
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plant embryo( PO:0009009 )
radicle( PO:0020031 )
plumule( PO:0020032 )
plant embryo stage( PO:0007631 )
seed development stage( PO:0001170 )
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Related Strains
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Phenotype images
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Last updated
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Mar 11, 2026
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Update info.