|
Basic Information
|
|
CGSNL Gene Symbol
|
PIL13
|
|
Gene Symbol Synonym
|
OsPIL1, OsPIL13, OsbHLH152, bHLH152, PIF7, OsPIF7, OsPIF4, PIF4, OsPIF1
|
|
CGSNL Gene Name
|
PHYTOCHROME INTERACTING FACTOR-LIKE 13
|
|
Gene Name Synonym
|
phytochrome-interacting factor-like protein 1, PIF-like gene 1, basic helix-loop-helix protein 152, Phytochrome-interacting factor 7
|
|
Protein Name
|
PHYTOCHROME INTERACTING FACTOR-LIKE PROTEIN 13
|
|
Allele
|
pil13, ospil13, PIL13v3m
|
|
Chromosome No.
|
3
|
|
Explanation
|
OsPIL1 in Todaka et al. 2012, Seo et al. 2020, Li et al. 2021. OsPIF4 in Hu et al. 2020. OsPIF1 in Desai et al. 2021. GO:0090333: regulation of stomatal closure.
|
|
Trait Class
|
Tolerance and resistance - Stress tolerance
Reproductive organ - Heading date
Vegetative organ - Leaf
Seed - Morphological traits - Embryo
|
|
Expression
|
|
|
Sequence/Locus
|
|
cDNA Accession No.
|
AK105637
|
|
MSU ID
|
LOC_Os03g56950.1
LOC_Os03g56950.2
LOC_Os03g56950.3
LOC_Os03g56950.4
LOC_Os03g56950.5
LOC_Os03g56950.6
LOC_Os03g56950.7
|
|
RAP ID
|
Os03g0782500
|
|
Links
|
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
|
INSD Accession List
(Test version)
|
-
|
|
Map
|
|
Locate(cM)
|
|
|
Link map
|
Classical linkage map
|
|
References
|
|
Luo C., Xu Z., Iqbal Z., Li Y., Essemine J., Fang S., Li N., Huang K., Meng X., Li Z., Chen G., Qu M.
Commun Biol 2025 8(1) 1286
The phytochrome-interacting factor PIL13 enhances water use efficiency under fluctuating light and drought resilience in rice and soybean.
|
|
Dong N.Q., Lin H.X.
J Integr Plant Biol 2025 67(11) 2784-2786
Temperature-dependent embryoless seeds improve milled rice yield and storability.
|
|
Wang Z., Xu M., Liu Y., Zheng X., Hong Z., He M., Jin X., Tang J., Li X., Tian X., Qian Q., Bu Q.
Nat Commun 2025 16(1) 6893
OsBZR4 regulates temperature-dependent embryogenesis in rice.
|
|
Li M., Fu D., Xu T., Wu C.
Int J Mol Sci 2021 22(15)
<i>VPB1</i> Encoding BELL-like homeodomain Protein Is Involved in Rice Panicle Architecture.
|
|
Desai J.S., Lawas L.M.F., Valente A.M., Leman A.R., Grinevich D.O., Jagadish S.V.K., Doherty C.J.
Proc. Natl. Acad. Sci. U.S.A. 2021 118(25)
Warm nights disrupt transcriptome rhythms in field-grown rice panicles.
|
|
Hu W., Figueroa-Balderas R., Chi-Ham C., Lagarias J.C.
Plant Direct 2020 4(4) e00210
Regulation of monocot and dicot plant development with constitutively active alleles of phytochrome B.
|
|
Seo H., Kim S.H., Lee B.D., Lim J.H., Lee S.J., An G., Paek N.C.
Int J Mol Sci 2020 21(6)
The Rice <i>Basic Helix-Loop-Helix 79</i> (<i>OsbHLH079</i>) Determines leaf angle and Grain Shape.
|
|
Wei K., Chen H.
BMC Plant Biol. 2018 18(1) 309
Comparative functional genomics analysis of bHLH gene family in rice, maize and wheat.
|
|
Liu Z., Wang Z., Gu H., You J., Hu M., Zhang Y., Zhu Z., Wang Y., Liu S., Chen L., Liu X., Tian Y., Zhou S., Jiang L., Liu L., Wan J.
Front Plant Sci 2018 9 782
Identification and Phenotypic Characterization of <i>ZEBRA LEAF16</i> Encoding a beta-hydroxyacyl-ACP dehydratase in Rice.
|
|
Burman N., Bhatnagar A., Khurana J.P.
Plant Physiol. 2017
OsbZIP48, a HY5 transcription factor ortholog, exerts pleiotropic effects in light-regulated development.
|
|
Chen H.C., Hsieh-Feng V., Liao P.C., Cheng W.H., Liu L.Y., Yang Y.W., Lai M.H., Chang M.C.
Plant Mol. Biol. 2017 94(4-5) 531-548
The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.
|
|
Todaka D., Nakashima K., Maruyama K., Kidokoro S., Osakabe Y., Ito Y., Matsukura S., Fujita Y., Yoshiwara K., Ohme-Takagi M., Kojima M., Sakakibara H., Shinozaki K., Yamaguchi-Shinozaki K.
Proc. Natl. Acad. Sci. U.S.A. 2012 109(39) 15947-52
Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress.
|
|
Zhao X.L., Shi Z.Y., Peng L.T., Shen G.Z., Zhang J.L.
N Biotechnol 2011 28(6) 788-97
An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
|
|
Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
Biosci. Biotechnol. Biochem. 2007 71 1183-91
Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
|
|
Li X, Duan X, Jiang H, Sun Y, Tang Y, Yuan Z, Guo J, Liang W, Chen L, Yin J, Ma H, Wang J, Zhang D.
Plant Physiol. 2006 141(4) 1167-84
Genome-wide analysis of basic/helix-loop-helix transcription factor family in rice and Arabidopsis.
|
|
DB Reference
|
|
Gramene ID
|
-
|
|
Ontologies
|
|
Gene Ontology
|
DNA binding( GO:0003677 )
response to abiotic stimulus( GO:0009628 )
response to water deprivation( GO:0009414 )
response to temperature stimulus( GO:0009266 )
temperature compensation of the circadian clock( GO:0010378 )
circadian rhythm( GO:0007623 )
embryonic development ending in seed dormancy( GO:0009793 )
3'-phosphoadenosine 5'-phosphosulfate metabolic process( GO:0050427 )
water homeostasis( GO:0030104 )
response to low light intensity stimulus( GO:0009645 )
response to abscisic acid stimulus( GO:0009737 )
regulation of stomatal movement( GO:0010119 )
nucleus( GO:0005634 )
response to light stimulus( GO:0009416 )
response to heat( GO:0009408 )
|
|
Trait Ontology
|
flowering time( TO:0002616 )
stress trait( TO:0000164 )
abiotic stress trait( TO:0000168 )
drought tolerance( TO:0000276 )
internode length( TO:0000145 )
temperature response trait( TO:0000432 )
heat tolerance( TO:0000259 )
embryo development trait( TO:0000620 )
water use efficiency( TO:0001017 )
light sensitivity( TO:0000075 )
stomatal closure rate( TO:0000520 )
abscisic acid sensitivity( TO:0000615 )
light intensity sensitivity( TO:0000460 )
relative yield( TO:0000153 )
relative chlorophyll content( TO:0001016 )
|
|
Plant Ontology
|
plant embryo stage( PO:0007631 )
leaf( PO:0025034 )
|
|
Related Strains
|
|
-
|
|
Phenotype images
|
|
-
|
|
Last updated
|
|
Jan 5, 2026
|
Update info.