Update info.Gene - Detail
Detail of Gene
| Basic Information | |
|---|---|
| CGSNL Gene Symbol | PUPK20-2 |
| Gene Symbol Synonym | OsPupK20-2, PupK20-2, DIR55, OsDIR55, OsjDIR55 |
| CGSNL Gene Name | _ |
| Gene Name Synonym | Dirigent 55, DIR domain protein 55 |
| Protein Name | |
| Allele | dir55, dir55-3, dir55-7 |
| Chromosome No. | 12 |
| Explanation | AB458444. BAK26565. A major quantitative trait locus for phosphorus-deficiency tolerance, Pup1, was identified in the traditional aus-type rice variety Kasalath. The Pup1 dirigent gene OsPupK20-2 is downstream of PSTOL1. GO:0098771: inorganic ion homeostasis. GO:0160073: Casparian strip assembly. PO:0030123: panicle inflorescence. TO:0001041: root yield. TO:0020083: stem diameter. TO:1000041: root system sodium content. |
| Trait Class |
Vegetative organ - Root
Tolerance and resistance - Stress tolerance Character as QTL - Yield and productivity Character as QTL - Plant growth activity |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. | - |
| MSU ID |
LOC_Os12g26380.1
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| RAP ID |
Os12g0449650 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
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INSD Accession List (Test version) |
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| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
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Xue B., Duan W., Gong L., Zhu D., Li X., Li X., Liang Y.K.
Plant J. 2024 The OsDIR55 gene increases salt tolerance by altering the root diffusion barrier.
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Duan W., Xue B., He Y., Liao S., Li X., Li X., Liang Y.K.
Int J Mol Sci 2023 24(8) Genome-Wide Identification and Expression Pattern Analysis of Dirigent Members in the Genus <i>Oryza</i>.
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Gamuyao R., Chin J.H., Pariasca-Tanaka J., Pesaresi P., Catausan S., Dalid C., Slamet-Loedin I., Tecson-Mendoza EM., Wissuwa M., Heuer S.
Nature 2012 488(7412) 535-9 The protein kinase PSTOL1 from traditional rice confers tolerance of phosphorus deficiency.
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Chin,J.H., Gamuyao,R., Dalid,C., Bustamam,M., Prasetiyono,J., Moeljopawiro,S., Wissuwa,M. and Heuer,S.
Plant Physiol. 2011 156(3) 1202-1216 Developing Rice with High Yield under Phosphorus Deficiency: Pup1 Sequence to Application
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Heuer S,Lu X,Chin JH,Tanaka JP,Kanamori H,Matsumoto T,De Leon T,Ulat VJ,Ismail AM,Yano M,Wissuwa M
Plant Biotechnol J. 2009 7 456-71 Comparative sequence analyses of the major quantitative trait locus phosphorus uptake 1 (Pup1) reveal a complex genetic structure.
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| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
apoplast( GO:0048046 )
phenylpropanoid biosynthetic process( GO:0009699 ) response to salt stress( GO:0009651 ) response to abscisic acid stimulus( GO:0009737 ) plant-type cell wall organization( GO:0009664 ) plasma membrane( GO:0005886 ) extracellular space( GO:0005615 ) sodium ion homeostasis( GO:0055078 ) potassium ion homeostasis( GO:0055075 ) response to oxidative stress( GO:0006979 ) |
| Trait Ontology |
salt tolerance( TO:0006001 )
abscisic acid sensitivity( TO:0000615 ) sodium content( TO:0000608 ) potassium content( TO:0000609 ) sodium to potassium content ratio( TO:0000525 ) biomass yield( TO:0000327 ) grain yield( TO:0000396 ) stem length( TO:0000576 ) growth and development trait( TO:0000357 ) yield trait( TO:0000371 ) shoot potassium content( TO:0020003 ) stomatal conductance( TO:0000522 ) transpiration rate( TO:0001018 ) tiller number( TO:0000346 ) grain yield per plant( TO:0000449 ) stem strength( TO:0000051 ) leaf rolling tolerance( TO:0002662 ) relative biomass( TO:0000143 ) oxidative stress( TO:0002657 ) proline content( TO:0006002 ) lignin content( TO:0000731 ) shoot sodium content( TO:0020004 ) leaf necrosis( TO:0000652 ) |
| Plant Ontology |
endodermis( PO:0000252 )
xylem vessel( PO:0025417 ) sclerenchyma( PO:0005427 ) exodermis( PO:0005772 ) root endodermis( PO:0005059 ) flag leaf( PO:0020103 ) inflorescence( PO:0009049 ) stem( PO:0009047 ) leaf sheath( PO:0020104 ) leaf( PO:0025034 ) root( PO:0009005 ) |
| Related Strains | |
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| Phenotype images | |
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| Last updated | |
| Feb 26, 2026 | |
