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Basic Information
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CGSNL Gene Symbol
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NAC42
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Gene Symbol Synonym
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OsNAC42, ONAC042, ONAC42, ONAC051, ONAC51, OsNTL4, NTL4, OsSOG13, SOG13
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CGSNL Gene Name
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NAC DOMAIN-CONTAINING PROTEIN 42
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Gene Name Synonym
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NAC domain-containing protein 042, NAC domain-containing protein 42, NAC domain-containing protein 51, NAC membrane-bound transcription factor 4, NAC MTF4, suppressor of gamma response 13
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Protein Name
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NAC DOMAIN-CONTAINING PROTEIN 42
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Allele
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osnac42, OsNAC42HapA, OsNAC42HapB, OsNAC42HapC
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Chromosome No.
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9
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Explanation
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GO:1901698: response to nitrogen compound. GO:1903314: regulation of nitrogen cycle metabolic process.
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Trait Class
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Tolerance and resistance - Stress tolerance
Other
Seed - Physiological traits - Storage substances
Character as QTL - Grain quality
Character as QTL - Plant growth activity
Character as QTL - Yield and productivity
Seed - Physiological traits - Taste
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK099237
AK068501
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MSU ID
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LOC_Os09g32040.1
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RAP ID
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Os09g0493700
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Weng Y., Zheng X., Xu X., Zhou Z., Chen K., Wu H., Fu L.
Plants (Basel) 2026 15(11)
Divergent Roles of <i>SOG</i> Family Genes in salt tolerance: A Comparative Genomics Study Between Barley and Rice.
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Lou G., Fu P., Gao H., Li M., Shi H., Liu R., Li Y., Zhou H., Xia D., Wang Y., Gao G., He Y.
Plant Biotechnol. J. 2026 24(3) 1697-1711
Genetic Determinants and Breeding Strategies for Rice Cooking and Eating Quality: A Comprehensive Review.
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Lou G., Chen P., Li P., Gao H., Xiong J., Wan S., Zheng Y., Wang Y., Alam M., Chen Y., Wang L., Bai J., Tan X., Rao W., Wu B., Zhou H., Li Y., Gao G., Zhang Q., Xiao J., Li X., Lai X., Zhang Q., He Y.
Adv Sci (Weinh) 2025 12(31) e04163
Antagonistic Ghd7-OsNAC42 Complexes Modulate Carbon and Nitrogen Metabolism to Achieves Superior Quality and High Yield in Rice.
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Tang W., Ye J., Yao X., Zhao P., Xuan W., Tian Y., Zhang Y., Xu S., An H., Chen G., YU J., Wu W., Ge Y., Liu X., Li J., Zhang H., Zhao Y., Yang B., Jiang X., Peng C., Zhou C., Terzaghi W., Wang C., Wan J.
Nat Commun 2019 10(1) 5279
Genome-wide associated study identifies NAC42-activated nitrate transporter conferring high nitrogen use efficiency in rice.
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Sang-Gyu Kim, Lee S., Pil Joon Seo, Soon-Kap Kim, Jeong-Kook Kim, Chung-Mo Park
Genomics 2010 95(1) 56-65
Genome-scale screening and molecular characterization of membrane-bound transcription factors in Arabidopsis and rice.
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Shen H., Yin Y., Chen F., Xu Y., Richard A. Dixon
Bioenerg. Res. 2009 2 217–232
A Bioinformatic Analysis of NAC Genes for Plant Cell Wall Development in Relation to Lignocellulosic Bioenergy Production
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Fang Y., You J., Xie K., Xie W., Xiong L.
Mol. Genet. Genomics 2008 280(6) 547-63
Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice.
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Ooka H., Satoh K., Doi K., Nagata T., Otomo Y., Murakami K., Matsubara K., Osato N., Kawai J., Carninci P., Hayashizaki Y., Suzuki K., Kojima K., Takahara Y., Yamamoto K., Kikuchi S.
DNA Res. 2003 10(6) 239-47
Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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response to heat( GO:0009408 )
response to cold( GO:0009409 )
response to water deprivation( GO:0009414 )
response to salt stress( GO:0009651 )
leaf development( GO:0048366 )
regulation of transcription, DNA-dependent( GO:0006355 )
DNA binding( GO:0003677 )
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Trait Ontology
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leaf development trait( TO:0000655 )
salt tolerance( TO:0006001 )
drought tolerance( TO:0000276 )
cold tolerance( TO:0000303 )
heat tolerance( TO:0000259 )
nitrogen sensitivity( TO:0000011 )
endosperm storage protein content( TO:0002653 )
seed quality( TO:0000162 )
grain yield( TO:0000396 )
starch content( TO:0000696 )
amylose content( TO:0000196 )
fruit flavor trait( TO:0002694 )
plant height( TO:0000207 )
grain number( TO:0002759 )
panicle length( TO:0000040 )
grain yield per plant( TO:0000449 )
chalky endosperm( TO:0000266 )
endosperm storage protein-2 content( TO:0000109 )
panicle number( TO:0000152 )
filled grain number( TO:0000447 )
days to heading( TO:0000137 )
seed set percent( TO:0000455 )
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Plant Ontology
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leaf development stage( PO:0001050 )
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Related Strains
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Phenotype images
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Last updated
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Oct 1, 2026
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Update info.