Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol CUC1
Gene Symbol Synonym ONAC039, ONAC39, NAC39, OsNAC39, OsCUC1, DLN86, OsDLN86, OsSOG49, SOG49
CGSNL Gene Name CUP SHAPED COTYLEDON 1
Gene Name Synonym NAC domain-containing protein 039, NAC domain-containing protein 39, CUP SHAPED COTYLEDON1, DLN repressor 86, DLN motif protein 86, suppressor of gamma response 49
Protein Name NAC DOMAIN-CONTAINING PROTEIN 39
Allele
Chromosome No. 3
Explanation
Trait Class Tolerance and resistance - Stress tolerance
Other
Expression
Sequence/Locus
cDNA Accession No. AK065989
MSU ID LOC_Os03g21030.1
RAP ID Os03g0327100
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Weng Y., Zheng X., Xu X., Zhou Z., Chen K., Wu H., Fu L.
Plants (Basel) 2026  15(11) 
Divergent Roles of <i>SOG</i> Family Genes in salt tolerance: A Comparative Genomics Study Between Barley and Rice.
Singh P., Mathew I.E., Verma A., Tyagi A.K., Agarwal P.
Int J Mol Sci 2019  20(7) 
Analysis of Rice Proteins with DLN repressor Motif/S.
Deshpande G.M., Ramakrishna K., Chongloi G.L., Vijayraghavan U.
J. Exp. Bot. 2015  66(9)  2773-84
Functions for rice RFL in vegetative axillary meristem specification and outgrowth.
Shen H., Yin Y., Chen F., Xu Y., Richard A. Dixon
Bioenerg. Res. 2009  2  217–232
A Bioinformatic Analysis of NAC Genes for Plant Cell Wall Development in Relation to Lignocellulosic Bioenergy Production
Fang Y., You J., Xie K., Xie W., Xiong L.
Mol. Genet. Genomics 2008  280(6)  547-63
Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice.
Ooka H., Satoh K., Doi K., Nagata T., Otomo Y., Murakami K., Matsubara K., Osato N., Kawai J., Carninci P., Hayashizaki Y., Suzuki K., Kojima K., Takahara Y., Yamamoto K., Kikuchi S.
DNA Res. 2003  10(6)  239-47
Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.
DB Reference
Gramene ID -
Ontologies
Gene Ontology response to salt stress( GO:0009651 )
DNA binding( GO:0003677 )
regulation of transcription, DNA-dependent( GO:0006355 )
Trait Ontology salt tolerance( TO:0006001 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Oct 1, 2026

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