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Basic Information
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CGSNL Gene Symbol
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_
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Gene Symbol Synonym
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ONAC007, ONAC7, OsSND1, SND1, OsSWN1, SWN1, DLN157, OsDLN157, OsSWN1/NST, NST, OsNST
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CGSNL Gene Name
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_
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Gene Name Synonym
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NAC domain-containing protein 007, NAC domain-containing protein 7, SECONDARY WALL ASSOCIATED NAC DOMAIN PROTEIN 1, SECONDARY WALL NAC DOMAIN PROTEIN 1, secondary wall NAC transcription factor 1, secondary wall-associated NAC 1, no apical meristem, DLN repressor 157, DLN motif protein 157, nucleotide sugar transport
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Protein Name
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_
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Allele
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Chromosome No.
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6
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Explanation
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JN634070. the orthologue of the rice NAC Secondary-wall Thickening factor (NST) transcription factor. the rice orthologue of NST3/SND1 from Arabidopsis. GO:1901141: regulation of lignin biosynthetic process.
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Trait Class
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Vegetative organ - Culm
Tolerance and resistance - Stress tolerance
Other
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK062952
AK119784
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MSU ID
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LOC_Os06g04090.1
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RAP ID
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Os06g0131700
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Wang H., Lu H., Yang Z., Zhang Z., Li M., Zhang Z., Dai W., Song X., Olsen K.M., Qiang S.
J. Exp. Bot. 2023 74(5) 1403-1419
Characterization of lodging variation of weedy rice.
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Ning J., He W., Wu L., Chang L., Hu M., Fu Y., Liu F., Sun H., Gu P., Ndjiondjop M.N., Sun C., Zhu Z.
Plant Biotechnol. J. 2023 21(5) 931-942
The MYB transcription factor Seed Shattering 11 controls seed Shattering by repressing lignin synthesis in African rice.
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Ke S., Luan X., Liang J., Hung Y.H., Hsieh T.F., Zhang X.Q.
Plant Mol. Biol. 2019 100(1-2) 151-161
Rice OsPEX1, an extensin-like protein, affects lignin biosynthesis and plant growth.
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Zhao K., Lin F., Romero-Gamboa SP., Saha P., Goh H.J., An G., Jung K.H., Hazen S.P., Bartley L.E.
Front Plant Sci 2019 10 1275
Rice Genome-Scale Network Integration Reveals Transcriptional Regulators of Grass Cell Wall Synthesis.
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Singh P., Mathew I.E., Verma A., Tyagi A.K., Agarwal P.
Int J Mol Sci 2019 20(7)
Analysis of Rice Proteins with DLN repressor Motif/S.
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Nuoendagula, Tsuji Y., Takata N., Sakamoto S., Nakagawa-Izumi A., Taniguchi T., Ralph J., Mitsuda N., Kajita S.
Physiol Plant 2018 163(2) 170-182
Change in lignin structure, but not in lignin content, in transgenic poplar overexpressing the rice master regulator of secondary cell wall biosynthesis.
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Borah P., Sharma E., Kaur A., Chandel G., Mohapatra T., Kapoor S., Khurana J.P.
Sci Rep 2017 7 42131
Analysis of drought-responsive signalling network in two contrasting rice cultivars using transcriptome-based approach.
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Sakamoto S., Takata N., Oshima Y., Yoshida K., Taniguchi T., Mitsuda N.
Sci Rep 2016 6 19925
Wood reinforcement of poplar by rice NAC transcription factor.
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Chai M. F., Bellizzi M., Wan C. X., Cui Z. F., Li Y. B., Wang G. L.
Journal of Plant Biology 2015 58 44-51
The NAC transcription factor OsSWN1 regulates secondary cell wall development in Oryza sativa
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Yoshida K., Sakamoto S., Kawai T., Kobayashi Y., Sato K., Ichinose Y., Yaoi K., Akiyoshi-Endo M., Sato H., Takamizo T., Ohme-Takagi M., Mitsuda N.
Front Plant Sci 2013 4 383
Engineering the Oryza sativa cell wall with rice NAC transcription factors regulating secondary wall formation.
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Hirano K., Kondo M., Aya K., Miyao A., Sato Y., Antonio B.A., Namiki N., Nagamura Y., Matsuoka M.
Plant Cell Physiol. 2013 54(11) 1791-802
Identification of transcription factors involved in rice secondary cell wall formation.
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Madana M R Ambavaram, Krishnan A., Kurniawan R Trijatmiko, Pereira A.
Plant Physiol. 2011 155(2) 916-31
Coordinated activation of cellulose and repression of lignin biosynthesis pathways in rice.
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Zhong,R., Lee,C., McCarthy,R.L., Reeves,C.K., Jones,E.G. and Ye,Z.H.
Plant Cell Physiol. 2011
Transcriptional activation of secondary wall biosynthesis by rice and maize NAC and MYB transcription factors
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Shen H., Yin Y., Chen F., Xu Y., Richard A. Dixon
Bioenerg. Res. 2009 2 217–232
A Bioinformatic Analysis of NAC Genes for Plant Cell Wall Development in Relation to Lignocellulosic Bioenergy Production
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Fang Y., You J., Xie K., Xie W., Xiong L.
Mol. Genet. Genomics 2008 280(6) 547-63
Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice.
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Ooka H., Satoh K., Doi K., Nagata T., Otomo Y., Murakami K., Matsubara K., Osato N., Kawai J., Carninci P., Hayashizaki Y., Suzuki K., Kojima K., Takahara Y., Yamamoto K., Kikuchi S.
DNA Res. 2003 10(6) 239-47
Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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DNA binding( GO:0003677 )
lignin biosynthetic process( GO:0009809 )
secondary cell wall biogenesis( GO:0009834 )
fruit dehiscence( GO:0010047 )
positive regulation of transcription, DNA-dependent( GO:0045893 )
response to water deprivation( GO:0009414 )
anther dehiscence( GO:0009901 )
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Trait Ontology
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drought tolerance( TO:0000276 )
leaf angle( TO:0000206 )
flower anatomy and morphology trait( TO:0000499 )
lignin content( TO:0000731 )
sugar content( TO:0000333 )
lignin biosynthesis trait( TO:0000733 )
stem strength( TO:0000051 )
lodging incidence( TO:0000068 )
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Plant Ontology
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Related Strains
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Phenotype images
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Last updated
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Feb 8, 2025
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Update info.