|
Basic Information
|
|
CGSNL Gene Symbol
|
CRY1B
|
|
Gene Symbol Synonym
|
OsCRY1b, OsCRY2, CRY1b, CRY1, OsCCT1b, CCT1b
|
|
CGSNL Gene Name
|
CRYPTOCHROME 1B
|
|
Gene Name Synonym
|
cryptochrome 1b, Blue-light-receptor cryptochrome 2
|
|
Protein Name
|
CRYPTOCHROME 1B
|
|
Allele
|
cry1b-1, cry1b-2, cry1b-3, Oscry1b-1
|
|
Chromosome No.
|
4
|
|
Explanation
|
AB073547. AB098568. a rice ortholog of Arabidopsis gene for circadian clock component. CRY1 in Matsuzaki et al. 2015. TO:0000949: seedling growth and development trait.
|
|
Trait Class
|
Biochemical character
Tolerance and resistance - Stress tolerance
Vegetative organ - Leaf
|
|
Expression
|
|
|
Sequence/Locus
|
|
cDNA Accession No.
|
AK072182
|
|
MSU ID
|
LOC_Os04g37920.1
LOC_Os04g37920.3
LOC_Os04g37920.4
LOC_Os04g37920.6
|
|
RAP ID
|
Os04g0452100
|
|
Links
|
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
|
INSD Accession List
(Test version)
|
-
|
|
Map
|
|
Locate(cM)
|
67.8
|
|
Link map
|
Classical linkage map
|
|
References
|
|
Pooam M., El-Ballat EM., Jourdan N., Ali H.M., Hano C., Ahmad M., El-Esawi MA.
Plants (Basel) 2023 12(14)
<i>SNAC3</i> Transcription Factor Enhances Arsenic Stress Tolerance and grain yield in Rice (<i>Oryza sativa</i> L.) through Regulating Physio-Biochemical Mechanisms, Stress-Responsive Genes, and cryptochrome 1b.
|
|
Li C., Wang X., Zhang L., Zhang C., Yu C., Zhao T., Liu B., Li H., Liu J.
Int J Mol Sci 2021 23(1)
OsBIC1 Directly Interacts with OsCRYs to Regulate leaf sheath Length through Mediating GA-Responsive Pathway.
|
|
Hwang O.J., Back K.
Molecules 2021 26(4)
Suppression of Rice cryptochrome 1b Decreases Both Melatonin and Expression of Brassinosteroid Biosynthetic Genes Resulting in Salt Tolerance.
|
|
Ma Z., Wu T., Huang K., Jin Y.M., Li Z., Chen M., Yun S., Zhang H., Yang X., Chen H., Bai H., Du L., Ju S., Guo L., Bian M., Hu L., Du X., Jiang W.
Front Plant Sci 2020 11 709
A Novel AP2/ERF Transcription Factor, OsRPH1, Negatively Regulates plant height in Rice.
|
|
Matsuzaki J., Kawahara Y., Izawa T.
Plant Cell 2015 27(3) 633-48
Punctual Transcriptional Regulation by the Rice Circadian Clock under Fluctuating Field Conditions.
|
|
Hirose F., Inagaki N., Takano M.
Plant Signal Behav 2013 8(3)
Differences and similarities in the photoregulation of gibberellin metabolism between rice and dicots.
|
|
Hirose F., Inagaki N., Hanada A., Yamaguchi S., Kamiya Y., Miyao A., Hirochika H., Takano M.
Plant Cell Physiol. 2012 53(9) 1570-82
Cryptochrome and Phytochrome Cooperatively but Independently Reduce Active Gibberellin Content in Rice Seedlings under Light Irradiation.
|
|
Hirose,F., Shinomura,T., Tanabata,T., Shimada,H. and Takano,M.
Plant Cell Physiol. 2006 47(7) 915-925
Involvement of Rice Cryptochromes in De-etiolation Responses and Flowering.
|
|
Zhang YC,Gong SF,Li QH,Sang Y,Yang HQ
Plant J. 2006 46 971-83
Functional and signaling mechanism analysis of rice CRYPTOCHROME 1.
|
|
Matsumoto N., Hirano T., Iwasaki T., Yamamoto N.
Plant Physiol. 2003 133(4) 1494-503
Functional analysis and intracellular localization of rice cryptochromes.
|
|
DB Reference
|
|
Gramene ID
|
-
|
|
Ontologies
|
|
Gene Ontology
|
regulation of unidimensional cell growth( GO:0051510 )
protein amino acid autophosphorylation( GO:0046777 )
detection of light stimulus( GO:0009583 )
response to water deprivation( GO:0009414 )
DNA repair( GO:0006281 )
oxidation reduction( GO:0055114 )
anthocyanin metabolic process( GO:0046283 )
circadian regulation of calcium ion oscillation( GO:0010617 )
singlet oxygen-mediated programmed cell death( GO:0010343 )
stomatal movement( GO:0010118 )
regulation of meristem growth( GO:0010075 )
blue light photoreceptor activity( GO:0009882 )
response to blue light( GO:0009637 )
circadian rhythm( GO:0007623 )
DNA photolyase activity( GO:0003913 )
protein kinase activity( GO:0004672 )
ATP binding( GO:0005524 )
nucleus( GO:0005634 )
photomorphogenesis( GO:0009640 )
blue light signaling pathway( GO:0009785 )
gibberellic acid mediated signaling( GO:0009740 )
cytoplasm( GO:0005737 )
regulation of growth( GO:0040008 )
regulation of brassinosteroid biosynthetic process( GO:0010422 )
response to salt stress( GO:0009651 )
response to cadmium ion( GO:0046686 )
melatonin biosynthetic process( GO:0030187 )
|
|
Trait Ontology
|
blue light sensitivity( TO:0000159 )
leaf sheath length( TO:0002689 )
gibberellic acid content( TO:0002675 )
coleoptile length( TO:0001007 )
leaf length( TO:0000135 )
salt tolerance( TO:0006001 )
leaf lamina joint bending( TO:0002688 )
brassinosteroid content( TO:0002676 )
|
|
Plant Ontology
|
seedling development stage( PO:0007131 )
|
|
Related Strains
|
|
-
|
|
Phenotype images
|
|
-
|
|
Last updated
|
|
Nov 15, 2023
|
Update info.