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Basic Information
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CGSNL Gene Symbol
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CRY1A
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Gene Symbol Synonym
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OsCRY1a, OsCRY1, CRY1a, CRY2, OsCCT1a, CCT1a
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CGSNL Gene Name
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CRYPTOCHROME 1A
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Gene Name Synonym
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cryptochrome 1a, Blue-light-receptor cryptochrome 1
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Protein Name
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CRYPTOCHROME 1A
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Allele
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Oscry1a-2
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Chromosome No.
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2
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Explanation
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AB073546. AB024337. a rice ortholog of Arabidopsis gene for circadian clock component. CRY2 in Matsuzaki et al. 2015. TO:0000949: seedling growth and development trait.
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Trait Class
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Biochemical character
Vegetative organ - Leaf
Tolerance and resistance - Stress tolerance
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK064910
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MSU ID
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LOC_Os02g36380.1
LOC_Os02g36380.2
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RAP ID
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Os02g0573200
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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86.8
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Link map
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Classical linkage map
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References
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Han S., Liu Y., Bao A., Zeng H., Huang G., Geng M., Zhang C., Zhang Q., Lu J., Wu M., Guo L.
J. Plant Physiol. 2023 280 153904
OsCSN1 regulates the growth of rice seedlings through the GA signaling pathway in blue light.
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Sun C., Liu S., He C., Zhong C., Liu H., Luo X., Li K., Zhang K., Wang Q., Chen C., Tang Y., Yang B., Chen X., Xu P., Zou T., Li S., Qin P., Wang P., Chu C., Deng X.
Int J Mol Sci 2022 23(12)
Crosstalk between the Circadian Clock and Histone Methylation.
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Li C., Wang X., Zhang L., Zhang C., Yu C., Zhao T., Liu B., Li H., Liu J.
Int J Mol Sci 2021 23(1)
OsBIC1 Directly Interacts with OsCRYs to Regulate leaf sheath Length through Mediating GA-Responsive Pathway.
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Fang C., Chen W., Li C., Jian X., Li Y., Lin H., Lin W.
Sci Rep 2016 6 34569
Methyl-CpG binding domain protein acts to regulate the repair of cyclobutane pyrimidine dimers on rice DNA.
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Matsuzaki J., Kawahara Y., Izawa T.
Plant Cell 2015 27(3) 633-48
Punctual Transcriptional Regulation by the Rice Circadian Clock under Fluctuating Field Conditions.
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Hirose F., Inagaki N., Takano M.
Plant Signal Behav 2013 8(3)
Differences and similarities in the photoregulation of gibberellin metabolism between rice and dicots.
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Hirose F., Inagaki N., Hanada A., Yamaguchi S., Kamiya Y., Miyao A., Hirochika H., Takano M.
Plant Cell Physiol. 2012 53(9) 1570-82
Cryptochrome and Phytochrome Cooperatively but Independently Reduce Active Gibberellin Content in Rice Seedlings under Light Irradiation.
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Hirose,F., Shinomura,T., Tanabata,T., Shimada,H. and Takano,M.
Plant Cell Physiol. 2006 47(7) 915-925
Involvement of Rice Cryptochromes in De-etiolation Responses and Flowering.
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Zhang YC,Gong SF,Li QH,Sang Y,Yang HQ
Plant J. 2006 46 971-83
Functional and signaling mechanism analysis of rice CRYPTOCHROME 1.
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Matsumoto N., Hirano T., Iwasaki T., Yamamoto N.
Plant Physiol. 2003 133(4) 1494-503
Functional analysis and intracellular localization of rice cryptochromes.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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oxidation reduction( GO:0055114 )
regulation of unidimensional cell growth( GO:0051510 )
protein amino acid autophosphorylation( GO:0046777 )
cytoplasm( GO:0005737 )
nucleus( GO:0005634 )
ATP binding( GO:0005524 )
protein kinase activity( GO:0004672 )
DNA photolyase activity( GO:0003913 )
anthocyanin metabolic process( GO:0046283 )
circadian regulation of calcium ion oscillation( GO:0010617 )
singlet oxygen-mediated programmed cell death( GO:0010343 )
stomatal movement( GO:0010118 )
regulation of meristem growth( GO:0010075 )
blue light photoreceptor activity( GO:0009882 )
blue light signaling pathway( GO:0009785 )
photomorphogenesis( GO:0009640 )
response to blue light( GO:0009637 )
response to UV-B( GO:0010224 )
photoreceptor activity( GO:0009881 )
circadian rhythm( GO:0007623 )
DNA repair( GO:0006281 )
response to water deprivation( GO:0009414 )
detection of light stimulus( GO:0009583 )
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Trait Ontology
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UV-B light sensitivity( TO:0000601 )
leaf sheath length( TO:0002689 )
blue light sensitivity( TO:0000159 )
gibberellic acid content( TO:0002675 )
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Plant Ontology
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seedling development stage( PO:0007131 )
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Related Strains
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Phenotype images
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Last updated
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Jul 19, 2023
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Update info.