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Basic Information
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CGSNL Gene Symbol
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COI1B
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Gene Symbol Synonym
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OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646, OsFBL23, FBL23, OsCOl-1, COl-1
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CGSNL Gene Name
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CORONATINE INSENSITIVE 1B
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Gene Name Synonym
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coronatine insensitive 1b, F-box protein 260, F-box-type E3 ubiquitin ligase L23
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Protein Name
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F-BOX PROTEIN 260
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Allele
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oscoi1b-1, oscoi1b, coi1b, coi1b-4
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Chromosome No.
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5
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Explanation
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a JA receptor. OsCOl-1 in Wang et al. 2023. The result of the pull-down assay showed that JA-Ile bound to OsCOI1b-OsJAZ3/4/6/7 co-receptor pairs (Okumura et al. 2023). TO:0020068: beta-glucan content. TO:0000975: grain width. GO:2000762: regulation of phenylpropanoid metabolic process.
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Trait Class
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Vegetative organ - Leaf
Vegetative organ - Root
Reproductive organ - Pollination, fertilization, fertility
Coloration - Chlorophyll
Seed - Morphological traits - Grain shape
Tolerance and resistance - Disease resistance
Tolerance and resistance - Insect resistance
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Reproductive organ - Spikelet, flower, glume, awn
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK101514
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MSU ID
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LOC_Os05g37690.1
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RAP ID
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Os05g0449500
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
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Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Cheaib M., Nguyen H.T., Couderc M., Serret J., Soriano A., Larmande P., Richter C., Junker B.H., Raorane M.L., Petitot A.S., Champion A.
PLoS ONE 2024 19(10) e0311136
Transcriptomic and metabolomic reveal OsCOI2 as the jasmonate-receptor master switch in rice root.
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Dong K., Wu F., Cheng S., Li S., Zhang F., Xing X., Jin X., Luo S., Feng M., Miao R., Chang Y., Zhang S., You X., Wang P., Zhang X., Lei C., Ren Y., Zhu S., Guo X., Wu C., Yang D.L., Lin Q., Cheng Z., Wan J.
Mol Plant 2024 17(6) 900-919
OsPRMT6a-mediated arginine methylation of OsJAZ1 regulates jasmonate signaling and spikelet development in rice.
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Wang X., Chen Y., Liu S., Fu W., Zhuang Y., Xu J., Lou Y., Baldwin I.T., Li R.
New Phytol. 2023 238(5) 2144-2158
Functional dissection of rice jasmonate receptors involved in development and defense.
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Okumura T., Kitajima T., Kaji T., Urano H., Matsumoto K., Inagaki H., Miyamoto K., Okada K., Ueda M.
Biosci. Biotechnol. Biochem. 2023 87(10) 1122-1128
Difference in the ligand affinity among redundant plant hormone receptors of rice OsCOI1a/1b/2-OsJAZs.
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Wang X., Cheng R., Xu D., Huang R., Li H., Jin L., Wu Y., Tang J., Sun C., Peng D., Chu C., Guo X.
Nat Commun 2023 14(1) 3354
MG1 interacts with a protease inhibitor and confers resistance to rice root-knot nematode.
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Dai Y.S., Liu D., Guo W., Liu Z.X., Zhang X., Shi L.L., Zhou D.M., Wang L.N., Kang K., Wang F.Z., Zhao S.S., Tan Y.F., Hu T., Chen W., Li P., Zhou Q.M., Yuan L.Y., Zhang Z., Chen Y.Q., Zhang W.Q., Li J., Yu L.J., Xiao S.
Plant Biotechnol. J. 2023 21(6) 1286-1300
Poaceae-specific β-1,3;1,4-d-glucans link jasmonate signalling to OsLecRK1-mediated defence response during rice-brown planthopper interactions.
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Qiu J., Xie J., Chen Y., Shen Z., Shi H., Naqvi N.I., Qian Q., Liang Y., Kou Y.
Mol Plant 2022 15(4) 723-739
Warm temperature compromises JA-regulated basal resistance to enhance Magnaporthe oryzae infection in rice.
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Wang R., You X., Zhang C., Fang H., Wang M., Zhang F., Kang H., Xu X., Liu Z., Wang J., Zhao Q., Wang X., Hao Z., He F., Tao H., Wang D., Wang J., Fang L., Qin M., Zhao T., Zhang P., Xing H., Xiao Y., Liu W., Xie Q., Wang G.L., Ning Y.
Genome Biol. 2022 23(1) 154
An ORFeome of rice E3 ubiquitin ligases for global analysis of the ubiquitination interactome.
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Gao Y., Xiang X., Zhang Y., Cao Y., Wang B., Zhang Y., Wang C., Jiang M., Duan W., Chen D., Zhan X., Cheng S., Liu Q., Cao L.
Int J Mol Sci 2022 23(2)
Disruption of <i>OsPHD1</i>, Encoding a UDP-glucose epimerase, Causes JA Accumulation and Enhanced Bacterial Blight Resistance in Rice.
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Lin Y., Sun Z., Li Z., Xue R., Cui W., Sun S., Liu T., Zeng R., Song Y.
Front Plant Sci 2019 10 652
Deficiency in Silicon Transporter Lsi1 Compromises Inducibility of Anti-herbivore Defense in Rice Plants.
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Tian J., Cao L., Chen X., Chen M., Zhang P., Cao L., Persson S., Zhang D., Yuan Z.
Development 2019 146(4)
The OsJAZ1 degron modulates jasmonate signaling sensitivity during rice development.
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Dai Z., Tan J., Zhou C., Yang X., Yang F., Zhang S., Sun S., Miao X., Shi Z.
Plant Biotechnol. J. 2019
The OsmiR396-OsGRF8-OsF3H-flavonoid pathway mediates resistance to the brown planthopper in rice (Oryza sativa).
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Mao C., Ding J., Zhang B., Xi D., Ming F.
Plant J. 2018 94(3) 454-468
OsNAC2 positively affects salt-induced cell death and binds to the OsAP37 and OsCOX11 promoters.
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Sakuraba Y., Han S.H., Yang H.J., Piao W., Paek N.C.
Plant Mol. Biol. 2016 92(1-2) 223-34
Mutation of Rice EARLY FLOWERING3.1 (OsELF3.1) delays leaf senescence in rice.
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He Y., Zhang H., Sun Z., Li J., Hong G., Zhu Q., Zhou X., MacFarlane S., Yan F., Chen J.
New Phytol. 2016
Jasmonic acid-mediated defense suppresses brassinosteroid-mediated susceptibility to Rice black streaked dwarf virus infection in rice.
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Cai Q., Yuan Z., Chen M., Yin C., Luo Z., Zhao X., Liang W., Hu J., Zhang D.
Nat Commun 2014 5 3476
Jasmonic acid regulates spikelet development in rice.
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Lee S.H., Sakuraba Y., Lee T., Kim K.W., An G., Lee H.Y., Paek N.C.
J Integr Plant Biol 2014
Mutation of Oryza sativa CORONATINE INSENSITIVE 1b (OsCOI1b) delays leaf senescence.
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Lee H.Y., Seo J.S., Cho J.H., Jung H., Kim J.K., Lee J.S., Rhee S., Do Choi Y.
PLoS ONE 2013 8(1) e52802
Oryza sativa COI homologues restore jasmonate signal transduction in Arabidopsis COI1-1 mutants.
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Yang D.L., Yao J., Mei C.S., Tong X.H., Zeng L.J., Li Q., Xiao L.T., Sun T.P., Li J., Deng X.W., Lee C.M., Thomashow M.F., Yang Y., He Z., He S.Y.
Proc. Natl. Acad. Sci. U.S.A. 2012 109(19) E1192-200
Plant hormone jasmonate prioritizes defense over growth by interfering with gibberellin signaling cascade.
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Yamada S., Kano A., Tamaoki D., Miyamoto A., Shishido H., Miyoshi S., Taniguchi S., Akimitsu K., Gomi K.
Plant Cell Physiol. 2012 53(12) 2060-72
Involvement of OsJAZ8 in jasmonate-induced resistance to bacterial blight in rice.
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Hua Z., Zou C., Shin-Han Shiu, Richard D Vierstra
PLoS ONE 2011 6(1) e16219
Phylogenetic comparison of F-Box (FBX) gene superfamily within the plant kingdom reveals divergent evolutionary histories indicative of genomic drift.
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Xu G., Ma H., Nei M., Kong H.
Proc. Natl. Acad. Sci. U.S.A. 2009 106(3) 835-40
Evolution of F-box genes in plants: different modes of sequence divergence and their relationships with functional diversification.
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Yang X., Udaya C Kalluri, Jawdy S., Lee E Gunter, Yin T., Timothy J Tschaplinski, David J Weston, Ranjan P., Gerald A Tuskan
Plant Physiol. 2008 148(3) 1189-200
The F-box gene family is expanded in herbaceous annual plants relative to woody perennial plants.
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Jain M, Nijhawan A, Arora R, Agarwal P, Ray S, Sharma P, Kapoor S, Tyagi AK, Khurana JP.
Plant Physiol. 2007 143(4) 1467-1483
F-Box Proteins in Rice. Genome-Wide Analysis, Classification, Temporal and Spatial Gene Expression during Panicle and Seed Development, and Regulation by Light and Abiotic Stress.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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response to insect( GO:0009625 )
response to wounding( GO:0009611 )
shade avoidance( GO:0009641 )
jasmonic acid mediated signaling pathway( GO:0009867 )
regulation of flower development( GO:0009909 )
stomatal movement( GO:0010118 )
defense response to insect( GO:0002213 )
response to herbivore( GO:0080027 )
defense response to virus( GO:0051607 )
leaf senescence( GO:0010150 )
response to far red light( GO:0010218 )
SCF ubiquitin ligase complex( GO:0019005 )
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process( GO:0031146 )
negative regulation of defense response( GO:0031348 )
defense response to bacterium( GO:0042742 )
defense response to fungus( GO:0050832 )
defense response to nematode( GO:0002215 )
response to jasmonic acid stimulus( GO:0009753 )
phenylpropanoid metabolic process( GO:0009698 )
nucleus( GO:0005634 )
inflorescence development( GO:0010229 )
root development( GO:0048364 )
detection of jasmonic acid stimulus( GO:0009754 )
protein ubiquitination( GO:0016567 )
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Trait Ontology
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spikelet anatomy and morphology trait( TO:0000657 )
jasmonic acid sensitivity( TO:0000172 )
stay green trait( TO:0002712 )
blast disease( TO:0000074 )
chlorophyll ratio( TO:0000298 )
grain yield( TO:0000396 )
grain weight( TO:0000590 )
spikelet fertility( TO:0000180 )
leaf senescence( TO:0000249 )
silicon sensitivity( TO:0000031 )
insect damage resistance( TO:0000261 )
brown planthopper resistance( TO:0000424 )
black streak dwarf virus resistance( TO:0000020 )
polysaccharide content( TO:0006007 )
nematode damage resistance( TO:0000384 )
root development trait( TO:0000656 )
grain size( TO:0000397 )
inflorescence development trait( TO:0000621 )
seed size( TO:0000391 )
grain length( TO:0000734 )
grain width( TO:0000402 )
1000-seed weight( TO:0000382 )
chlorophyll content( TO:0000495 )
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Plant Ontology
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4 leaf senescence stage( PO:0001054 )
root development stage( PO:0007520 )
inflorescence development stage( PO:0001083 )
whole plant( PO:0000003 )
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Related Strains
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Phenotype images
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Last updated
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Mar 3, 2026
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Update info.