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Basic Information
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CGSNL Gene Symbol
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MIR172B
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Gene Symbol Synonym
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OsmiR172b, miR172b, osa-MIR172b, Osa-miR172b
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CGSNL Gene Name
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MICRORNA172B
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Gene Name Synonym
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rice microRNA172b
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Protein Name
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Allele
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Chromosome No.
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1
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Explanation
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miRBASE accession: MI0001140. AY551255. LM379346. target: OsbHLH153 (Os03g0171700).
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Trait Class
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Vegetative organ - Leaf
Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
Other
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Expression
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Sequence/Locus
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cDNA Accession No.
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-
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MSU ID
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-
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RAP ID
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-
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Links
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INSD Accession List
(Test version)
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Panigrahy M., Panigrahi K.C.S., Poli Y., Ranga A., Majeed N.
Biology (Basel) 2022 11(5)
Integrated Expression Analysis of Small RNA, Degradome and Microarray Reveals Complex Regulatory Action of miRNA during Prolonged Shade in Swarnaprabha Rice.
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Dai Z., Wang J., Zhu M., Miao X., Shi Z.
Front Plant Sci 2016 7 1891
OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
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Wang L., Sun S., Jin J., Fu D., Yang X., Weng X., Xu C., Li X., Xiao J., Zhang Q.
Proc. Natl. Acad. Sci. U.S.A. 2015 112(50) 15504-9
Coordinated regulation of vegetative and reproductive branching in rice.
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Mondal T.K., Ganie S.A.
Gene 2014 535 204-209
Identification and characterization of salt responsive miRNA-SSR markers in rice (oryza sativa)
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Lee D.Y., An G.
Plant J. 2012 69(3) 445-61
Two AP2 family genes, SUPERNUMERARY BRACT (SNB) and OsINDETERMINATE SPIKELET 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
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Kozomara,A. and Griffiths-Jones,S.
Nucleic Acids Res. 2011 39 D152-D157
miRBase: integrating microRNA annotation and deep-sequencing data
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Jeong D.H., Park S., Zhai J., Gurazada S.G., De Paoli E., Meyers B.C., Green P.J.
Plant Cell 2011 23(12) 4185-207
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.
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Zhu QH,Upadhyaya NM,Gubler F,Helliwell CA
BMC Plant Biol 2009 9 149
Over-expression of miR172 causes loss of spikelet determinacy and floral organ abnormalities in rice (Oryza sativa).
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Li,Y., Li,W. and Jin,Y.X.
Acta Biochim. Biophys. Sin. (Shanghai) 2005 37 (2) 75-87
Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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mRNA cleavage( GO:0006379 )
RNA-induced silencing complex( GO:0016442 )
gene silencing by miRNA( GO:0035195 )
micro-ribonucleoprotein complex( GO:0035068 )
response to light intensity( GO:0009642 )
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Trait Ontology
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salt sensitivity( TO:0000429 )
lemma length( TO:0000650 )
light intensity sensitivity( TO:0000460 )
flag leaf angle( TO:0000124 )
leaf development trait( TO:0000655 )
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Plant Ontology
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-
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Related Strains
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Phenotype images
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Last updated
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Sep 14, 2022
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Update info.