Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol MIR172A
Gene Symbol Synonym OsmiR172a, miR172a, osa-MIR172a, Osa-miR172a
Gene Name Synonym rice microRNA172a
Protein Name
Chromosome No. 9
Explanation miRBASE accession: MI0001139. AY551254. LM379345. TO:0000869: glume anatomy and morphology trait.
Trait Class Tolerance and resistance - Disease resistance
Reproductive organ - Spikelet, flower, glume, awn
cDNA Accession No. -
Links -
INSD Accession List
(Test version)
Link map Classical linkage map
Wang Z., Xia Y., Lin S., Wang Y., Guo B., Song X., Ding S., Zheng L., Feng R., Chen S., Bao Y., Sheng C., Zhang X., Wu J., Niu D., Jin H., Zhao H.
Plant J. 2018   
osa-miR164a targets OsNAC60 and negatively regulates rice immunity against the blast fungus Magnaporthe oryzae.
Dai Z., Wang J., Zhu M., Miao X., Shi Z.
Front Plant Sci 2016  7  1891
OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
Lee D.Y., An G.
Plant J. 2012  69(3)  445-61
Two AP2 family genes, SUPERNUMERARY BRACT (SNB) and OsINDETERMINATE SPIKELET 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
Jeong D.H., Park S., Zhai J., Gurazada S.G., De Paoli E., Meyers B.C., Green P.J.
Plant Cell 2011  23(12)  4185-207
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.
Kozomara,A. and Griffiths-Jones,S.
Nucleic Acids Res. 2011  39  D152-D157
miRBase: integrating microRNA annotation and deep-sequencing data
Zhu QH,Upadhyaya NM,Gubler F,Helliwell CA
BMC Plant Biol 2009  9  149
Over-expression of miR172 causes loss of spikelet determinacy and floral organ abnormalities in rice (Oryza sativa).
Li,Y., Li,W. and Jin,Y.X.
Acta Biochim. Biophys. Sin. (Shanghai) 2005  37 (2)  75-87
Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa
TextPresso Search Search textpresso for MIR172A ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology mRNA cleavage( GO:0006379 )
micro-ribonucleoprotein complex( GO:0035068 )
RNA-induced silencing complex( GO:0016442 )
gene silencing by miRNA( GO:0035195 )
regulation of timing of meristematic phase transition( GO:0048506 )
defense response to fungus( GO:0050832 )
Trait Ontology lemma length( TO:0000650 )
glume number( TO:0006029 )
fertility related trait( TO:0000420 )
blast disease( TO:0000074 )
Plant Ontology flower meristem( PO:0000229 )
floral organ( PO:0025395 )
Related Strains
Phenotype images
Last updated
Jan 24, 2019