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Basic Information
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CGSNL Gene Symbol
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IDS1
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Gene Symbol Synonym
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OsIDS1, AP2/EREBP#033, AP2/EREBP33, AP2-33/IDS1, AP2-33, AP2-2, DLN104, OsDLN104
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CGSNL Gene Name
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INDETERMINATE SPIKELET 1
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Gene Name Synonym
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OsINDETERMINATE SPIKELET 1, INDETERMINATE SPIKELET1, APETALA2/ethylene-responsive element binding protein 33, APETALA2-2, DLN repressor 104, DLN motif protein 104
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Protein Name
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Allele
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osids1, ids1-1
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Chromosome No.
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3
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Explanation
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AP2-2 in Dai et al. 2016.
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Trait Class
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Reproductive organ - Inflorescence
Tolerance and resistance - Stress tolerance
Reproductive organ - Heading date
Reproductive organ - Spikelet, flower, glume, awn
Seed - Morphological traits
Other
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Expression
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Sequence/Locus
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cDNA Accession No.
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CT836522
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MSU ID
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LOC_Os03g60430.1
LOC_Os03g60430.2
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RAP ID
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Os03g0818800
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Lv Y., Ma J., Wei H., Xiao F., Wang Y., Jahan N., Hazman M., Qian Q., Shang L., Guo L.
Front Plant Sci 2022 13 912637
Combining GWAS, Genome-Wide Domestication and a Transcriptomic Analysis Reveals the Loci and Natural Alleles of salt tolerance in Rice (<i>Oryza sativa</i> L.).
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Singh P., Mathew I.E., Verma A., Tyagi A.K., Agarwal P.
Int J Mol Sci 2019 20(7)
Analysis of Rice Proteins with DLN repressor Motif/S.
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Yang X., Wang J., Dai Z., Zhao X., Miao X., Shi Z.
Rice (N Y) 2019 12(1) 40
miR156f integrates panicle architecture through genetic modulation of branch number and pedicel length pathways.
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Cho L.H., Yoon J., Wai A.H., An G.
Mol. Cells 2018 41(7) 665-675
<i>Histone Deacetylase 701 (HDT701)</i> Induces Flowering in Rice by Modulating Expression of <i>OsIDS1</i>.
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Cheng X., Zhang S., Tao W., Zhang X., Liu J., Sun J., Zhang H., Pu L., Huang R., Chen T.
Plant Physiol. 2018 178(2) 824-837
INDETERMINATE SPIKELET1 Recruits Histone Deacetylase and a Transcriptional Repression Complex to Regulate Rice salt tolerance.
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Dai Z., Wang J., Zhu M., Miao X., Shi Z.
Front Plant Sci 2016 7 1891
OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
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Wang L., Sun S., Jin J., Fu D., Yang X., Weng X., Xu C., Li X., Xiao J., Zhang Q.
Proc. Natl. Acad. Sci. U.S.A. 2015 112(50) 15504-9
Coordinated regulation of vegetative and reproductive branching in rice.
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Liu X., Zhou S., Wang W., Ye Y., Zhao Y., Xu Q., Zhou C., Tan F., Cheng S., Zhou D.X.
Plant Cell 2015 27(5) 1428-44
Regulation of histone methylation and reprogramming of gene expression in the rice inflorescence meristem.
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Ren D., Li Y., Zhao F., Sang X., Shi J., Wang N., Guo S., Ling Y., Zhang C., Yang Z., He G.
Plant Physiol. 2013 162(2) 872-84
MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice.
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Lee D.Y., An G.
Plant J. 2012 69(3) 445-61
Two AP2 family genes, SUPERNUMERARY BRACT (SNB) and OsINDETERMINATE SPIKELET 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
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Rashid M., Guangyuan H., Guangxiao Y., Hussain J., Xu Y.
Evol. Bioinform. Online 2012 8 321-355
AP2/ERF Transcription Factor in Rice: Genome-Wide Canvas and Syntenic Relationships between Monocots and Eudicots.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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DNA binding( GO:0003677 )
transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
transcription, DNA-dependent( GO:0006351 )
maintenance of floral meristem identity( GO:0010076 )
inflorescence development( GO:0010229 )
flower development( GO:0009908 )
negative regulation of transcription, DNA-dependent( GO:0045892 )
response to salt stress( GO:0009651 )
regulation of photoperiodism, flowering( GO:2000028 )
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Trait Ontology
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inflorescence anatomy and morphology trait( TO:0000373 )
lemma length( TO:0000650 )
flower development trait( TO:0000622 )
1000-seed weight( TO:0000382 )
grain size( TO:0000397 )
flowering time( TO:0002616 )
days to heading( TO:0000137 )
salt tolerance( TO:0006001 )
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Plant Ontology
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floral organ meristem development stage( PO:0007601 )
flower development stage( PO:0007615 )
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Related Strains
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Phenotype images
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Last updated
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Oct 11, 2022
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Update info.