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Basic Information
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CGSNL Gene Symbol
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NGR5
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Gene Symbol Synonym
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ERF142, OsERF#142, OsERF142, AP2/EREBP#049, AP2/EREBP49, SMOS1, OsSMOS1, SHB, OsAP2-EREBP-049, RLA1, RLA1/SMOS1, OsERF142/SMOS1, OsNGR5, GR5, OsGR5
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CGSNL Gene Name
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NITROGEN-MEDIATED TILLER GROWTH RESPONSE 5
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Gene Name Synonym
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ethylene response factor 142, APETALA2/ethylene-responsive element binding protein 49, small organ size1, small organ size 1, SHOEBOX, shoebox, reduced leaf angle1, reduced leaf angle 1, GRAIN ROUND 5
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Protein Name
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ETHYLENE RESPONSE FACTOR 142
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Allele
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smos1, smos1-1, smos1-2, smos1-3, sub, rla1, gr5-1, gr5-2, ngr5
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Chromosome No.
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5
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Explanation
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an unusual APETALA2 (AP2)-type transcription factor with an imperfect AP2 domain. AB897877. Transcriptome analysis in rice smos1 mutant: GEOID: GSE54357 GO:1900459: positive regulation of brassinosteroid mediated signaling pathway. GO:1900457: regulation of brassinosteroid mediated signaling pathway. GO:1902347: response to strigolactone. PO:0030123: panicle inflorescence. TO:0000975: grain width. TO:0001069: cooking quality trait. GO:1901698: response to nitrogen compound.
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Trait Class
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Other
Vegetative organ - Leaf
Vegetative organ - Culm
Vegetative organ - Root
Seed - Morphological traits - Grain shape
Seed - Physiological traits - Storage substances
Seed - Physiological traits - Taste
Character as QTL - Grain quality
Character as QTL - Yield and productivity
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK059324
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MSU ID
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LOC_Os05g32270.1
LOC_Os05g32270.2
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RAP ID
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Os05g0389000
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Yu D., Zhao S., Sun L., Guo D., Jiang W., Ma X., Li R., Zou J., Tan L.
Plant Biotechnol. J. 2025 23(10) 4477-4490
MTS1 regulates rice plant architecture by mediating phosphoinositide metabolism.
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Cao N., Zhou W., Zhao F., Jiao G., Xie L., Lu A., Wu J., Zhu M., Liu Y., Yu J., Zhao R., Yang X., Hu S., Sheng Z., Wei X., Lv Y., Tang S., Shao G., Hu P.
Nat Commun 2025 16(1) 3513
OsGATA7 and SMOS1 cooperatively determine rice taste quality by repressing OsGluA2 expression and protein biosynthesis.
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Wen R., Zhu M., Yu J., Kou L., Ahmad S., Wei X., Jiao G., Hu S., Sheng Z., Zhao F., Tang S., Shao G., Yu H., Hu P.
New Phytol. 2024 243(4) 1440-1454
Photosynthesis regulates tillering bud elongation and nitrogen-use efficiency via sugar-induced NGR5 in rice.
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Wang Y., Lv Y., Yu H., Hu P., Wen Y., Wang J., Tan Y., Wu H., Zhu L., Wu K., Chai B., Liu J., Zeng D., Zhang G., Zhu L., Gao Z., Dong G., Ren D., Shen L., Zhang Q., Li Q., Guo L., Xiong G., Qian Q., Hu J.
Plant Commun 2023 100673
GR5 acts in the G protein pathway to regulate grain size in rice.
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Fang Z., Ji Y., Hu J., Guo R., Sun S., Wang X.
Mol Plant 2020 13(4) 586-597
Strigolactones and Brassinosteroids Antagonistically Regulate the Stability of the D53-OsBZR1 Complex to Determine FC1 Expression in Rice Tillering.
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Wu K., Wang S., Song W., Zhang J., Wang Y., Liu Q., Yu J., Ye Y., Li S., Chen J., Zhao Y., Wang J., Wu X., Wang M., Zhang Y., Liu B., Wu Y., Harberd N.P., Fu X.
Science 2020 367(6478)
Enhanced sustainable green revolution yield via nitrogen-responsive chromatin modulation in rice.
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Zhang Z., Li J., Tang Z., Sun X., Zhang H., Yu J., Yao G., Li G., Guo H., Li J., Wu H., Huang H., Xu Y., Yin Z., Qi Y., Huang R., Yang W., Li Z.
J. Exp. Bot. 2018 69(20) 4723-4737
Gnp4/LAX2, a RAWUL protein, interferes with the OsIAA3-OsARF25 interaction to regulate grain length via the auxin signaling pathway in rice.
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Hirano K., Yoshida H., Aya K., Kawamura M., Hayashi M., Hobo T., Sato-Izawa K., Kitano H., Ueguchi-Tanaka M., Matsuoka M.
Mol Plant 2017 10(4) 590-604
SMALL ORGAN SIZE 1 and SMALL ORGAN SIZE 2/DWARF AND LOW-TILLERING Form a Complex to Integrate Auxin and Brassinosteroid Signaling in Rice.
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Qiao S., Sun S., Wang L., Wu Z., Li C., Li X., Wang T., Leng L., Tian W., Lu T., Wang X.
Plant Cell 2017 29(2) 292-309
The RLA1/SMOS1 Transcription Factor Functions with OsBZR1 to Regulate Brassinosteroid Signaling and Rice Architecture.
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Li J., Zhao Y., Chu H., Wang L., Fu Y., Liu P., Upadhyaya N., Chen C., Mou T., Feng Y., Kumar P., Xu J.
PLoS Genet. 2015 11(8) e1005464
SHOEBOX Modulates root meristem Size in Rice through Dose-Dependent Effects of Gibberellins on Cell Elongation and Proliferation.
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Aya K., Hobo T., Sato-Izawa K., Ueguchi-Tanaka M., Kitano H., Matsuoka M.
Plant Cell Physiol. 2014 55(5) 897-912
A Novel AP2-Type Transcription Factor, SMALL ORGAN SIZE1, Controls Organ Size Downstream of an Auxin Signaling Pathway.
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Rashid M., Guangyuan H., Guangxiao Y., Hussain J., Xu Y.
Evol. Bioinform. Online 2012 8 321-355
AP2/ERF Transcription Factor in Rice: Genome-Wide Canvas and Syntenic Relationships between Monocots and Eudicots.
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Hu L., Liu S.
Genet. Mol. Biol. 2011 34(4) 624-33
Genome-wide identification and phylogenetic analysis of the ERF gene family in cucumbers.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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microtubule cytoskeleton organization( GO:0000226 )
auxin mediated signaling pathway( GO:0009734 )
cell growth( GO:0016049 )
brassinosteroid mediated signaling( GO:0009742 )
regulation of auxin mediated signaling pathway( GO:0010928 )
hormone-mediated signaling( GO:0009755 )
response to brassinosteroid stimulus( GO:0009741 )
cell proliferation( GO:0008283 )
unidimensional cell growth( GO:0009826 )
seed germination( GO:0009845 )
transcription, DNA-dependent( GO:0006351 )
nucleus( GO:0005634 )
transcription factor activity( GO:0003700 )
DNA binding( GO:0003677 )
regulation of nitrogen utilization( GO:0006808 )
regulation of cell growth( GO:0001558 )
regulation of cell proliferation( GO:0042127 )
positive regulation of transcription, DNA-dependent( GO:0045893 )
regulation of starch biosynthetic process( GO:0010581 )
regulation of gibberellic acid mediated signaling( GO:0009937 )
response to sucrose stimulus( GO:0009744 )
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Trait Ontology
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gel consistency( TO:0000211 )
breakdown viscosity( TO:0000374 )
setback viscosity( TO:0000412 )
peak viscosity( TO:0000409 )
amylose content( TO:0000196 )
starch grain synthesis( TO:0002658 )
starch grain shape( TO:0002656 )
chalky endosperm( TO:0000266 )
nitrogen sensitivity( TO:0000011 )
grain width( TO:0000402 )
primary branch number( TO:0000547 )
panicle length( TO:0000040 )
endosperm storage protein content( TO:0002653 )
fruit flavor trait( TO:0002694 )
1000-seed weight( TO:0000382 )
grain thickness( TO:0000399 )
grain shape( TO:0002730 )
grain size( TO:0000397 )
yield trait( TO:0000371 )
tillering ability( TO:0000329 )
tiller number( TO:0000346 )
plant height( TO:0000207 )
leaf angle( TO:0000206 )
stem width( TO:0001035 )
pistil size( TO:0002602 )
stamen size( TO:0002601 )
seed size( TO:0000391 )
root length( TO:0000227 )
leaf size( TO:0002637 )
grain length( TO:0000734 )
brassinosteroid sensitivity( TO:0002677 )
root meristem development( TO:0002692 )
plant cell size( TO:0002684 )
auxin sensitivity( TO:0000163 )
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Plant Ontology
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0 seed germination stage( PO:0007057 )
root meristem( PO:0006085 )
2 root meristem formation stage( PO:0007527 )
inflorescence( PO:0009049 )
stem( PO:0009047 )
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Related Strains
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Phenotype images
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Last updated
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Mar 5, 2026
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Update info.