Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol LG3
Gene Symbol Synonym OsERF#062, OsERF062, OsERF62, ERF62, AP2/EREBP#125, AP2/EREBP125, AP2-125, OsLG3, OsLG3/OsAP2-125, OsAP2-125, WAP1, OsWAP1, OsSTAP1, STAP1, ERF1, OsERF1
CGSNL Gene Name LONG GRAIN 3
Gene Name Synonym ethylene response factor 62, APETALA2/ethylene-responsive element binding protein 125, Wall-Associated regulator WAP1
Protein Name ETHYLENE RESPONSE FACTOR 62
Allele OsLG3IRAT109, OsLG3Nipponbare, OsLG3ULG, OsLG3SN265, oslg3, oslg3-CRI-1, oslg3-CRI-2
Chromosome No. 3
Explanation OsSTAP1 and ERF1 in Wang et al. 2020. GO:2000377: regulation of reactive oxygen species metabolic process. PO:0030123: panicle inflorescence. GO:1902305: regulation of sodium ion transmembrane transport. GO:1900056: negative regulation of leaf senescence. GO:0098869: cellular oxidant detoxification. GO:2000377: regulation of reactive oxygen species metabolic process. GO:1902884: positive regulation of response to oxidative stress. GO:1903647: negative regulation of chlorophyll catabolic process. GO:1903285: positive regulation of hydrogen peroxide catabolic process.
Trait Class Seed - Morphological traits - Grain shape
Character as QTL - Yield and productivity
Tolerance and resistance - Stress tolerance
Other
Vegetative organ - Leaf
Expression
Sequence/Locus
cDNA Accession No. AK060527
MSU ID LOC_Os03g08470.1
LOC_Os03g08470.2
LOC_Os03g08470.3
RAP ID Os03g0183000
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Li F., Wu L., Li X., Chai Y., Ruan N., Wang Y., Xu N., Yu Z., Wang X., Chen H., Lu J., Xu H., Xu Z., Chen W., Xu Q.
New Phytol. 2024  243(6)  2251-2264
Dissecting the molecular basis of the ultra-large grain formation in rice.
Chen Y., He Y., Pan Y., Wen Y., Zhu L., Gao J., Chen W., Jiang D.
Rice (N Y) 2024  17(1)  63
Involvement of the Metallothionein gene OsMT2b in Drought and Cadmium Ions Stress in Rice.
Lim C., Kang K., Lim J., Lee H., Cho S.H., Paek N.C.
Plant J. 2024   
RICE LONG GRAIN 3 delays dark-induced senescence by downregulating abscisic acid signaling and upregulating reactive oxygen species scavenging activity.
Freeg H.A., Attia K.A., Casson S., Fiaz S., Ramadan E.A., Banna A.E., Zoulias N., Aboshosha A., Alamery S.
PLoS ONE 2022  17(3)  e0266087
Physio-biochemical responses and expressional profiling analysis of drought tolerant genes in new promising rice genotype.
Wang Y., Wang J., Zhao X., Yang S., Huang L., Du F., Li Z., Zhao X., Fu B., Wang W.
Rice (N Y) 2020  13(1)  50
Overexpression of the Transcription Factor Gene OsSTAP1 Increases salt tolerance in Rice.
Zhao K., Lin F., Romero-Gamboa SP., Saha P., Goh H.J., An G., Jung K.H., Hazen S.P., Bartley L.E.
Front Plant Sci 2019  10  1275
Rice Genome-Scale Network Integration Reveals Transcriptional Regulators of Grass Cell Wall Synthesis.
Xiong H., Yu J., Miao J., Li J., Zhang H., Wang X., Liu P., Zhao Y., Jiang C., Yin Z., Li Y., Guo Y., Fu B., Wang W., Li Z., Ali J., Li Z.
Plant Physiol. 2018  178(1)  451-467
Natural Variation in <i>OsLG3</i> Increases drought tolerance in Rice by Inducing ROS Scavenging.
Yu J., Xiong H., Zhu X., Zhang H., Li H., Miao J., Wang W., Tang Z., Zhang Z., Yao G., Zhang Q., Pan Y., Wang X., Rashid M.A.R., Li J., Gao Y., Li Z., Yang W., Fu X., Li Z.
BMC Biol. 2017  15(1)  28
OsLG3 contributing to rice grain length and yield was mined by Ho-LAMap.
Liu X., Zhou S., Wang W., Ye Y., Zhao Y., Xu Q., Zhou C., Tan F., Cheng S., Zhou D.X.
Plant Cell 2015  27(5)  1428-44
Regulation of histone methylation and reprogramming of gene expression in the rice inflorescence meristem.
Rashid M., Guangyuan H., Guangxiao Y., Hussain J., Xu Y.
Evol. Bioinform. Online 2012  8  321-355
AP2/ERF Transcription Factor in Rice: Genome-Wide Canvas and Syntenic Relationships between Monocots and Eudicots.
Nakano T, Suzuki K, Fujimura T, Shinshi H.
Plant Physiol. 2006  140(2)  411-32
Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
DB Reference
Gramene ID -
Ontologies
Gene Ontology DNA binding( GO:0003677 )
transcription factor activity( GO:0003700 )
transcription, DNA-dependent( GO:0006351 )
nucleus( GO:0005634 )
positive regulation of cell proliferation( GO:0008284 )
response to water deprivation( GO:0009414 )
hydrogen peroxide catabolic process( GO:0042744 )
chlorophyll catabolic process( GO:0015996 )
response to hydrogen peroxide( GO:0042542 )
response to salicylic acid stimulus( GO:0009751 )
response to oxidative stress( GO:0006979 )
negative regulation of abscisic acid mediated signaling( GO:0009788 )
response to absence of light( GO:0009646 )
leaf senescence( GO:0010150 )
response to osmotic stress( GO:0006970 )
regulation of hydrogen peroxide metabolic process( GO:0010310 )
response to salt stress( GO:0009651 )
response to abscisic acid stimulus( GO:0009737 )
response to ethylene stimulus( GO:0009723 )
response to gibberellin stimulus( GO:0009739 )
sodium ion homeostasis( GO:0055078 )
potassium ion homeostasis( GO:0055075 )
sequestering of metal ion( GO:0051238 )
response to cold( GO:0009409 )
cell redox homeostasis( GO:0045454 )
response to cytokinin stimulus( GO:0009735 )
abscisic acid mediated signaling( GO:0009738 )
ethylene mediated signaling pathway( GO:0009873 )
cytokinin mediated signaling( GO:0009736 )
Trait Ontology grain length( TO:0000734 )
grain yield( TO:0000396 )
drought tolerance( TO:0000276 )
osmotic response sensitivity( TO:0000095 )
salt tolerance( TO:0006001 )
abscisic acid sensitivity( TO:0000615 )
gibberellic acid sensitivity( TO:0000166 )
cold tolerance( TO:0000303 )
sodium content( TO:0000608 )
potassium content( TO:0000609 )
cytokinin sensitivity( TO:0000167 )
grain weight( TO:0000590 )
ethylene sensitivity( TO:0000173 )
grain size( TO:0000397 )
filled grain number( TO:0000447 )
leaf senescence( TO:0000249 )
light intensity sensitivity( TO:0000460 )
oxidative stress( TO:0002657 )
leaf color( TO:0000326 )
leaf yellowing tolerance( TO:0002664 )
chlorophyll content( TO:0000495 )
relative chlorophyll content( TO:0001016 )
hydrogen peroxide content( TO:0000605 )
Plant Ontology root( PO:0009005 )
stem( PO:0009047 )
leaf( PO:0025034 )
leaf sheath( PO:0020104 )
4 leaf senescence stage( PO:0001054 )
Related Strains
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Phenotype images
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Last updated
Mar 13, 2026

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