Update info.Gene - Detail
Detail of Gene
| Basic Information | |
|---|---|
| CGSNL Gene Symbol | RPH1 |
| Gene Symbol Synonym | OsERF#052, OsERF052, OsERF52, ERF52, AP2/EREBP#053, AP2/EREBP53, OsRPH1, STG5, OsSTG5 |
| CGSNL Gene Name | REDUCED PLANT HEIGHT 1 |
| Gene Name Synonym | ethylene response factor 52, APETALA2/ethylene-responsive element binding protein 53, Reduced Plant Height 1, salt tolerance gene 5 |
| Protein Name | ETHYLENE RESPONSE FACTOR 52 |
| Allele | stg5 |
| Chromosome No. | 5 |
| Explanation | the potential candidate gene of a major salt-tolerant locus known as qSTS5 (salt tolerance site 5). |
| Trait Class |
Vegetative organ - Culm
Tolerance and resistance - Stress tolerance Other |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. | - |
| MSU ID |
LOC_Os05g49700.1
|
| RAP ID |
Os05g0572000 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
|
INSD Accession List (Test version) |
- |
| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
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Wei H., Wang X., Zhang Z., Yang L., Zhang Q., Li Y., He H., Chen D., Zhang B., Zheng C., Leng Y., Cao X., Cui Y., Shi C., Liu Y., Lv Y., Ma J., He W., Liu X., Xu Q., Yuan Q., Yu X., Wang T., Qian H., Li X., Zhang B., Zhang H., Chen W., Guo M., Dai X., Wang Y., Zheng X., Guo L., Xie X., Qian Q., Shang L.
Natl Sci Rev 2024 11(4) nwae043 Uncovering key salt-tolerant regulators through a combined eQTL and GWAS analysis using the super pan-genome in rice.
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Ma Z., Wu T., Huang K., Jin Y.M., Li Z., Chen M., Yun S., Zhang H., Yang X., Chen H., Bai H., Du L., Ju S., Guo L., Bian M., Hu L., Du X., Jiang W.
Front Plant Sci 2020 11 709 A Novel AP2/ERF Transcription Factor, OsRPH1, Negatively Regulates plant height in Rice.
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Rashid M., Guangyuan H., Guangxiao Y., Hussain J., Xu Y.
Evol. Bioinform. Online 2012 8 321-355 AP2/ERF Transcription Factor in Rice: Genome-Wide Canvas and Syntenic Relationships between Monocots and Eudicots.
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Nakano T, Suzuki K, Fujimura T, Shinshi H.
Plant Physiol. 2006 140(2) 411-32 Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
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| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
transcription, DNA-dependent( GO:0006351 )
DNA binding( GO:0003677 ) transcription factor activity( GO:0003700 ) nucleus( GO:0005634 ) response to blue light( GO:0009637 ) response to salt stress( GO:0009651 ) sodium ion homeostasis( GO:0055078 ) potassium ion homeostasis( GO:0055075 ) |
| Trait Ontology |
plant height( TO:0000207 )
internode length( TO:0000145 ) leaf sheath length( TO:0002689 ) gibberellic acid content( TO:0002675 ) blue light sensitivity( TO:0000159 ) salt tolerance( TO:0006001 ) relative chlorophyll content( TO:0001016 ) sodium content( TO:0000608 ) potassium content( TO:0000609 ) sodium to potassium content ratio( TO:0000525 ) |
| Plant Ontology | - |
| Related Strains | |
| - | |
| Phenotype images | |
| - | |
| Last updated | |
| Jul 5, 2024 | |
