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Basic Information
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CGSNL Gene Symbol
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PLT5
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Gene Symbol Synonym
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OsPLT5, AP2/EREBP5, AP2/EREBP#005, BBM3, OsBBM3, BBM1, OsBBM1
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CGSNL Gene Name
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PLETHORA 5
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Gene Name Synonym
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Plethora 5, APETALA2/ethylene-responsive element binding protein 5, BABY BOOM3, BABY BOOM 3
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Protein Name
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PLETHORA 5
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Allele
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bbm3, Osbbm3
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Chromosome No.
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1
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Explanation
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NCBI BioProject ID PRJNA1253340: Transcriptome analyses for rice zygotes produced by in vitro fertilization. ortholog of Arabidopsis BBM. BBM3 in Khanday et al. 2019, Rahman et al. 2019, Chahal et al. 2022, Khanday et al. 2023, Akter et al. 2025. GO:1990110: callus formation. GO:1902275: regulation of chromatin organization.
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Trait Class
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Seed - Morphological traits - Embryo
Other
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK240892
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MSU ID
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LOC_Os01g67410.1
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RAP ID
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Os01g0899800
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Akter N., Tezuka T., Rattanawong K., Satoh A., Kinoshita A., Sato Y., Okamoto T.
Plant J. 2025 122(6) e70305
Role of paternal Oryza sativa Baby Booms (OsBBMs) in initiating de novo gene expression and regulating early zygotic development in rice.
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Guo F., Wang H., Lian G., Cai G., Liu W., Zhang H., Li D., Zhou C., Han N., Zhu M., Su Y., Seo P.J., Xu L., Bian H.
Commun Biol 2023 6(1) 457
Initiation of scutellum-derived callus is regulated by an embryo-like developmental pathway in rice.
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Khanday I., Santos-Medellín C., Sundaresan V.
New Phytol. 2023 238(2) 673-687
Somatic embryo initiation by rice BABY BOOM1 involves activation of zygote-expressed auxin biosynthesis genes.
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Chahal L.S., Conner J.A., Ozias-Akins P.
Front Plant Sci 2022 13 863908
Phylogenetically Distant <i>BABY BOOM</i> Genes From <i>Setaria italica</i> Induce Parthenogenesis in Rice.
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Zhao N., Zhang K., Wang C., Yan H., Liu Y., Xu W., Su Z.
Front Genet 2020 11 766
Systematic Analysis of Differential H3K27me3 and H3K4me3 Deposition in Callus and Seedling Reveals the Epigenetic Regulatory Mechanisms Involved in Callus Formation in Rice.
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Rahman M.H., Toda E., Kobayashi M., Kudo T., Koshimizu S., Takahara M., Iwami M., Watanabe Y., Sekimoto H., Yano K., Okamoto T.
Plant Cell Physiol. 2019 60(4) 725-737
Expression of Genes from Paternal Alleles in Rice Zygotes and Involvement of OsASGR-BBML1 in Initiation of Zygotic Development.
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Khanday I., Skinner D., Yang B., Mercier R., Sundaresan V.
Nature 2019 565(7737) 91-95
A male-expressed rice embryogenic trigger redirected for asexual propagation through seeds.
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Zhang Z., Zhao H., Li W., Wu J., Zhou Z., Zhou F., Chen H., Lin Y.
J Integr Plant Biol 2018
Genome-wide association study of callus induction variation to explore the callus formation mechanism of rice.
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Rashid M., Guangyuan H., Guangxiao Y., Hussain J., Xu Y.
Evol. Bioinform. Online 2012 8 321-355
AP2/ERF Transcription Factor in Rice: Genome-Wide Canvas and Syntenic Relationships between Monocots and Eudicots.
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Li P., Xue H.
Acta Biochim. Biophys. Sin. (Shanghai) 2011 43(9) 688-97
Structural characterization and expression pattern analysis of the rice PLT gene family.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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DNA binding( GO:0003677 )
transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
transcription, DNA-dependent( GO:0006351 )
embryonic development( GO:0009790 )
somatic embryogenesis( GO:0010262 )
regulation of cell cycle( GO:0051726 )
positive regulation of cell division( GO:0051781 )
chromatin organization( GO:0006325 )
regulation of chromosome organization( GO:0033044 )
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Trait Ontology
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seed viability( TO:0000345 )
callus induction( TO:0000428 )
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Plant Ontology
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plant zygote( PO:0000423 )
plant embryo stage( PO:0007631 )
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Related Strains
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Phenotype images
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Last updated
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Oct 10, 2025
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Update info.