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Basic Information
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CGSNL Gene Symbol
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PAL1
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Gene Symbol Synonym
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OsPAL1, PAL, OsPAL06, PAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6, OsPAL8, PAL8
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CGSNL Gene Name
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PHENYLALANINE AMMONIA-LYASE 1
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Gene Name Synonym
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phenylalanine ammonia-lyase 1, phenylalanine ammonia lyase
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Protein Name
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PHENYLALANINE AMMONIA-LYASE 1
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Allele
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ospal4, pal06
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Chromosome No.
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2
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Explanation
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Q0DZE0. X87946. A2X7F7. D41931. KF556681. OsPAL, OsPAL2 in Rakwal et al. 2009. OsPAL2 in Hayashiet al. 2014. OsPAL4 in Tonnessen et al. 2014, Wang et al. 2017, Zhou et al. 2018, Filipe et al. 2018, Bai et al. 2019, Sathe et al. 2019, Wu et al. 2019, Dong et al. 2020, Zhou et al. 2021, He et al. 2020, Singh et al. 2021, Wang et al. 2021, Wu et al. 2022, Yang et al. 2022, Wang et al. 2022, Wang et al. 2021, Huang et al. 2023, Ning et al. 2023, Ding et al. 2023, Liu et al. 2024, An et al. 2024, Shim et al. 2025. OsPAL6 (OsPAL06) in Yang et al. 2016, Su et al. 2025. OsPAL8 in Shad et al. 2024. TO:0001109: grain color trait. GO:0140426: PAMP-triggered immunity signalling pathway.
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Trait Class
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Tolerance and resistance
Tolerance and resistance - Disease resistance
Tolerance and resistance - Insect resistance
Coloration - Anthocyanin
Seed - Morphological traits
Biochemical character
Reproductive organ - panicle
Reproductive organ - Pollination, fertilization, fertility
Tolerance and resistance - Stress tolerance
Vegetative organ - Leaf
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK068993
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MSU ID
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LOC_Os02g41680.1
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RAP ID
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Os02g0627100
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Shim Y., Kim B., Choi Y., Cho S.H., Kim Y., Kim S.H., Yim Y., Kang K., Paek N.C.
Plant J. 2025 121(1) e17175
Rice OsDof12 enhances tolerance to drought stress by activating the phenylpropanoid pathway.
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Su P., Kang H., Peng Q., Peng W., Sun S., Du X., Zhang C., Lei Z., Bai L., Tang Q., Liu Y., Cernava T., Zhang D.
Microbiome 2025 13(1) 185
Host metabolites explain microbiome variation between different rice genotypes.
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Plant Cell Environ. 2024 47(9) 3668
Correction to 'OsJRL negatively regulates rice cold tolerance via interfering phenylalanine metabolism and flavonoid biosynthesis'.
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Liu H., Zhang J., Wang J., Fan Z., Qu X., Yan M., Zhang C., Yang K., Zou J., Le J.
Plant Cell 2024 36(11) 4768-4785
The rice R2R3 MYB transcription factor FOUR LIPS connects brassinosteroid signaling to lignin deposition and leaf angle.
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An Z., Yang Z., Zhou Y., Huo S., Zhang S., Wu D., Shu X., Wang Y.
Plant Cell Environ. 2024
OsJRL negatively regulates rice cold tolerance via interfering phenylalanine metabolism and flavonoid biosynthesis.
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Shad M.A., Li X., Rao M.J., Luo Z., Li X., Ali A., Wang L.
Int J Mol Sci 2024 25(18)
Exploring Lignin Biosynthesis Genes in Rice: Evolution, Function, and Expression.
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Wang X., Cheng R., Xu D., Huang R., Li H., Jin L., Wu Y., Tang J., Sun C., Peng D., Chu C., Guo X.
Nat Commun 2023 14(1) 3354
MG1 interacts with a protease inhibitor and confers resistance to rice root-knot nematode.
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Huang Q., Lin B., Cao Y., Zhang Y., Song H., Huang C., Sun T., Long C., Liao J., Zhuo K.
Front Plant Sci 2023 14 1134653
CRISPR/Cas9-mediated mutagenesis of the susceptibility gene <i>OsHPP04</i> in rice confers enhanced resistance to rice root-knot nematode.
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Ning J., He W., Wu L., Chang L., Hu M., Fu Y., Liu F., Sun H., Gu P., Ndjiondjop M.N., Sun C., Zhu Z.
Plant Biotechnol. J. 2023 21(5) 931-942
The MYB transcription factor Seed Shattering 11 controls seed Shattering by repressing lignin synthesis in African rice.
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Li H., Xu L., Wu W., Peng W., Lou Y., Lu J.
Biology (Basel) 2023 12(6)
Infestation by the Piercing-Sucking Herbivore <i>Nilaparvata lugens</i> Systemically Triggers JA- and SA-Dependent Defense Responses in Rice.
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Ding Y., Zhang F., Sun F., Liu J., Zhu Z., He X., Bai G., Ni Z., Sun Q., Su Z.
Plant Biotechnol. J. 2023 21(8) 1516-1518
Loss of OsHRC function confers blast resistance without yield penalty in rice.
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Wang P., Jia H., Guo T., Zhang Y., Wang W., Nishimura H., Li Z., Kawano Y.
J. Exp. Bot. 2023 74(3) 1059-1073
The secreted immune response peptide 1 functions as a phytocytokine in rice immunity.
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Liu Z., Qiu J., Shen Z., Wang C., Jiang N., Shi H., Kou Y.
Plant Commun 2023 100626
The E3 ubiquitin ligase OsRGLG5 targeted by the Magnaporthe oryzae effector AvrPi9 confers basal resistance against rice blast.
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Wu D., Guo J., Zhang Q., Shi S., Guan W., Zhou C., Chen R., Du B., Zhu L., He G.
New Phytol. 2022 234(3) 1031-1046
Necessity of rice resistance to planthoppers for OsEXO70H3 regulating SAMSL excretion and lignin deposition in cell walls.
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Wang R., You X., Zhang C., Fang H., Wang M., Zhang F., Kang H., Xu X., Liu Z., Wang J., Zhao Q., Wang X., Hao Z., He F., Tao H., Wang D., Wang J., Fang L., Qin M., Zhao T., Zhang P., Xing H., Xiao Y., Liu W., Xie Q., Wang G.L., Ning Y.
Genome Biol. 2022 23(1) 154
An ORFeome of rice E3 ubiquitin ligases for global analysis of the ubiquitination interactome.
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Yang X., Gu X., Ding J., Yao L., Gao X., Zhang M., Meng Q., Wei S., Fu J.
BMC Genomics 2022 23(1) 278
Gene expression analysis of resistant and susceptible rice cultivars to sheath blight after inoculation with Rhizoctonia solani.
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Ma J., Morel J.B., Riemann M., Nick P.
BMC Plant Biol. 2022 22(1) 601
Jasmonic acid contributes to rice resistance against Magnaporthe oryzae.
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Li W., Xiong Y., Lai L.B., Zhang K., Li Z., Kang H., Dai L., Gopalan V., Wang G.L., Liu W.
Plant Biotechnol. J. 2021
The rice RNase P protein subunit Rpp30 confers broad-spectrum resistance to fungal and bacterial pathogens.
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Zhou D., Shen W., Cui Y., Liu Y., Zheng X., Li Y., Wu M., Fang S., Liu C., Tang M., Yi Y., Zhao M., Chen L.
Front Plant Sci 2021 12 636877
APICAL SPIKELET ABORTION (ASA) Controls Apical Panicle Development in Rice by Regulating Salicylic Acid Biosynthesis.
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Mackon E., Ma Y., Jeazet Dongho Epse Mackon GC., Usman B., Zhao Y., Li Q., Liu P.
Genes (Basel) 2021 12(4)
Computational and Transcriptomic Analysis Unraveled <i>OsMATE34</i> as a Putative anthocyanin transporter in Black Rice (<i>Oryza sativa</i> L.) Caryopsis.
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Wang H., Bi Y., Gao Y., Yan Y., Yuan X., Xiong X., Wang J., Liang J., Li D., Song F.
Front Plant Sci 2021 12 802758
A Pathogen-Inducible Rice NAC transcription factor ONAC096 Contributes to Immunity Against <i>Magnaprothe oryzae</i> and <i>Xanthomonas oryzae</i> pv. <i>oryzae</i> by Direct Binding to the Promoters of <i>OsRap2.6</i>, <i>OsWRKY62</i>, and <i>OsPAL1</i>.
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Wang D., Wang H., Liu Q., Tu R., Zhou X., Zhang Y., Wu W., Yu P., Chen D., Zhan X., Cao L., Cheng S., Shen X.
Plant Cell Rep. 2021 40(5) 835-850
Reduction of OsMPK6 activity by a R89K mutation induces cell death and bacterial blight resistance in rice.
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Singh R.R., Pajar J.A., Audenaert K., Kyndt T.
Front Plant Sci 2021 12 713870
Induced Resistance by Ascorbate Oxidation Involves Potentiating of the Phenylpropanoid Pathway and Improved Rice Tolerance to Parasitic Nematodes.
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Xu R., Pan R., Zhang Y., Feng Y., Nath U.K., Gan Y., Shi C., Akhter D.
Int J Mol Sci 2021 22(18)
RNA-Seq-Based Profiling of <i>pl</i> Mutant Reveals Transcriptional Regulation of Anthocyanin Biosynthesis in Rice (<i>Oryza sativa</i> L.).
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Han J., Wang X., Wang F., Zhao Z., Li G., Zhu X., Su J., Chen L.
Rice (N Y) 2021 14(1) 12
The Fungal Effector Avr-Pita Suppresses Innate Immunity by Increasing COX Activity in Rice Mitochondria.
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Dong N.Q., Sun Y., Guo T., Shi C.L., Zhang Y.M., Kan Y., Xiang Y.H., Zhang H., Yang Y.B., Li Y.C., Zhao H.Y., Yu H.X., Lu Z.Q., Wang Y., Ye W.W., Shan J.X., Lin H.X.
Nat Commun 2020 11(1) 2629
UDP-glucosyltransferase regulates grain size and abiotic stress tolerance associated with metabolic flux redirection in rice.
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Valette M., Rey M., Doré J., Gerin F., Wisniewski-Dyé F.
Physiol Mol Biol Plants 2020 26(12) 2537-2551
Identification of a small set of genes commonly regulated in rice roots in response to beneficial rhizobacteria.
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Yang W., Ju Y., Zuo L., Shang L., Li X., Li X., Feng S., Ding X., Chu Z.
Rice (N Y) 2020 13(1) 28
OsHsfB4d Binds the Promoter and Regulates the Expression of OsHsp18.0-CI to Resistant Against Xanthomonas Oryzae.
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Fang C., Yang L., Chen W., Li L., Zhang P., Li Y., He H., Lin W.
J. Exp. Bot. 2020 71(6) 2127-2141
MYB57 transcriptionally regulates MAPK11 to interact with PAL2;3 and modulate rice allelopathy.
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He J., Liu Y., Yuan D., Duan M., Liu Y., Shen Z., Yang C., Qiu Z., Liu D., Wen P., Huang J., Fan D., Xiao S., Xin Y., Chen X., Jiang L., Wang H., Yuan L., Wan J.
Proc. Natl. Acad. Sci. U.S.A. 2020 117(1) 271-277
An R2R3 MYB transcription factor confers brown planthopper resistance by regulating the phenylalanine ammonia-lyase pathway in rice.
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Ma J., Wang Y., Ma X., Meng L., Jing R., Wang F., Wang S., Cheng Z., Zhang X., Jiang L., Wang J., Wang J., Zhao Z., Guo X., Lin Q., Wu F., Zhu S., Wu C., Ren Y., Lei C., Zhai H., Wan J.
Plant Biotechnol. J. 2019
Disruption of gene SPL35, encoding a novel CUE domain-containing protein, leads to cell death and enhanced disease response in rice.
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Bai P., Park C.H., Shirsekar G., Songkumarn P., Bellizzi M., Wang G.L.
Mol. Plant Pathol. 2019 20(4) 599-608
Role of lysine residues of the Magnaporthe oryzae effector AvrPiz-t in effector- and PAMP-triggered immunity.
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Wang J., Liu X., Zhang A., Ren Y., Wu F., Wang G., Xu Y., Lei C., Zhu S., Pan T., Wang Y., Zhang H., Wang F., Tan Y.Q., Wang Y., Jin X., Luo S., Zhou C., Zhang X., Liu J., Wang S., Meng L., Wang Y., Chen X., Lin Q., Zhang X., Guo X., Cheng Z., Wang J., Tian Y., Liu S., Jiang L., Wu C., Wang E., Zhou J.M., Wang Y.F., Wang H., Wan J.
Cell Res. 2019 29(10) 820-831
A cyclic nucleotide-gated channel mediates cytoplasmic calcium elevation and disease resistance in rice.
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Kachewar N.R., Gupta V., Ranjan A., Patel H.K., Sonti R.V.
BMC Plant Biol. 2019 19(1) 530
Overexpression of OsPUB41, a rice E3 ubiquitin ligase induced by cell wall degrading enzymes, enhances immune responses in Rice and Arabidopsis.
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Wu T., Peng C., Li B., Wu W., Kong L., Li F., Chu Z., Liu F., Ding X.
Rice (N Y) 2019 12(1) 90
OsPGIP1-Mediated Resistance to Bacterial Leaf Streak in Rice is Beyond Responsive to the Polygalacturonase of Xanthomonas oryzae pv. oryzicola.
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Dong Z., Li W., Liu J., Li L., Pan S., Liu S., Gao J., Liu L., Liu X., Wang G.L., Dai L.
Sci Rep 2019 9(1) 5408
The Rice Phosphate Transporter Protein OsPT8 Regulates disease resistance and Plant Growth.
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Atul Prakash Sathe, Su X., Chen Z., Chen T., Wei X., Tang S., Xiao-Bo Zhang, Jian-Li Wu
Rice (N Y) 2019 12(1) 68
Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice.
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Lu H.P., Luo T., Fu H.W., Wang L., Tan Y.Y., Huang J.Z., Wang Q., Ye G.Y., Gatehouse A.M.R., Lou Y.G., Shu Q.Y.
Nat Plants 2018 4(6) 338-344
Resistance of rice to insect pests mediated by suppression of serotonin biosynthesis.
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Kishi-Kaboshi M., Seo S., Takahashi A., Hirochika H.
Plant Cell Physiol. 2018 59(5) 903-915
The MAMP-Responsive MYB Transcription Factors MYB30, MYB55 and MYB110 Activate the HCAA Synthesis Pathway and Enhance Immunity in Rice.
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Qin P., Fan S., Deng L., Zhong G., Zhang S., Li M., Chen W., Wang G., Tu B., Wang Y., Chen X., Ma B., Li S.
Plant Cell Physiol. 2018 59(5) 887-902
lml1, Encoding a Conserved eukaryotic release factor 1 Protein, Regulates Cell Death and Pathogen Resistance by Forming a Conserved Complex with SPL33 in Rice.
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Ma J., Chen J., Wang M., Ren Y., Wang S., Lei C., Cheng Z., Sodmergen
J. Exp. Bot. 2018 69(5) 1051-1064
Disruption of OsSEC3A increases the content of salicylic acid and induces plant defense responses in rice.
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Wang J., Wang S., Hu K., Yang J., Xin X., Zhou W., Fan J., Cui F., Mou B., Zhang S., Wang G., Sun W.
Plant Physiol. 2018 176(2) 1835-1849
The Kinase OsCPK4 Regulates a Buffering Mechanism That Fine-Tunes Innate Immunity.
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Zhou X., Liao H., Chern M., Yin J., Chen Y., Wang J., Zhu X., Chen Z., Yuan C., Zhao W., Wang J., Li W., He M., Ma B., Wang J., Qin P., Chen W., Wang Y., Liu J., Qian Y., Wang W., Wu X., Li P., Zhu L., Li S., Ronald P.C., Chen X.
Proc. Natl. Acad. Sci. U.S.A. 2018 115(12) 3174-3179
Loss of function of a rice TPR-domain RNA-binding protein confers broad-spectrum disease resistance.
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Liu Q., Li X., Yan S., Yu T., Yang J., Dong J., Zhang S., Zhao J., Yang T., Mao X., Zhu X., Liu B.
BMC Plant Biol. 2018 18(1) 257
OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.
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Filipe O., De Vleesschauwer D., Haeck A., Demeestere K., Höfte M.
Sci Rep 2018 8(1) 3864
The energy sensor OsSnRK1a confers broad-spectrum disease resistance in rice.
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Wang J., Islam F., Li L., Long M., Yang C., Jin X., Ali B., Mao B., Zhou W.
Int J Mol Sci 2017 18(9)
Complementary RNA-Sequencing Based Transcriptomics and iTRAQ Proteomics Reveal the Mechanism of the Alleviation of Quinclorac Stress by Salicylic Acid in Oryza sativa ssp. japonica.
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Liu Q., Ning Y., Zhang Y., Yu N., Zhao C., Zhan X., Wu W., Chen D., Wei X., Wang G.L., Cheng S., Cao L.
Plant Cell 2017 29(2) 345-359
OsCUL3a Negatively Regulates Cell Death and Immunity by Degrading OsNPR1 in Rice.
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Li Z., Ao Y., Feng D., Liu J., Wang J., Wang H.B., Liu B.
Rice (N Y) 2017 10(1) 6
OsRLCK 57, OsRLCK107 and OsRLCK118 Positively Regulate Chitin- and PGN-Induced Immunity in Rice.
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Hu L., Wu Y., Wu D., Rao W., Guo J., Ma Y., Wang Z., Shangguan X., Wang H., Xu C., Huang J., Shi S., Chen R., Du B., Zhu L., He G.
Plant Cell 2017 29(12) 3157-3185
The Coiled-Coil and Nucleotide Binding Domains of BROWN PLANTHOPPER RESISTANCE14 Function in Signaling and Resistance against Planthopper in Rice.
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X Xue, Z X Cao, X T Zhang, Y Wang, Y F Zhang, Z X Chen, X B Pan, S M Zuo
Plant Dis. 2016 100(8) 1634-1642
Overexpression of OsOSM1 Enhances Resistance to Rice Sheath Blight.
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Karmakar S., Molla K.A., Chanda P.K., Sarkar S.N., Datta S.K., Datta K.
Planta 2016 243(1) 115-130
Green tissue-specific co-expression of chitinase and oxalate oxidase 4 genes in rice for enhanced resistance against sheath blight.
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Yang X., Gong P., Li K., Huang F., Cheng F., Pan G.
J. Exp. Bot. 2016 67(9) 2761-76
A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.
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Park C.H., Shirsekar G., Bellizzi M., Chen S., Songkumarn P., Xie X., Shi X., Ning Y., Zhou B., Suttiviriya P., Wang M., Umemura K., Wang G.L.
PLoS Pathog. 2016 12(3) e1005529
The E3 ligase APIP10 Connects the Effector AvrPiz-t to the NLR receptor Piz-t in Rice.
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Liu J., Chen X., Liang X., Zhou X., Yang F., Liu J., He S.Y., Guo Z.
Plant Physiol. 2016
Alternative splicing of rice WRKY62 and WRKY76 transcription factor genes in pathogen defense.
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Tonnessen B.W., Manosalva P., Lang J.M., Baraoidan M., Bordeos A., Mauleon R., Oard J., Hulbert S., Leung H., Leach J.E.
Plant Mol. Biol. 2014
Rice phenylalanine ammonia-lyase gene OsPAL4 is associated with broad spectrum disease resistance.
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Hayashi G., Shibato J., Imanaka T., Cho K., Kubo A., Kikuchi S., Satoh K., Kimura S., Ozawa S., Fukutani S., Endo S., Ichikawa K., Agrawal G.K., Shioda S., Fukumoto M., Rakwal R.
J. Hered. 2014 105(5) 723-38
Unraveling low-level gamma radiation--responsive changes in expression of early and late genes in leaves of rice seedlings at litate Village, Fukushima.
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Wu Z., Gui S., Wang S., Ding Y.
BMC Evol. Biol. 2014 14 100
Molecular evolution and functional characterisation of an ancient phenylalanine ammonia-lyase gene (NnPAL1) from Nelumbo nucifera: novel insight into the evolution of the PAL family in angiosperms.
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Duan L., Liu H., Li X., Xiao J., Wang S.
Physiol Plant 2014
Multiple phytohormones and phytoalexins are involved in disease resistance to Magnaporthe oryzae invaded from roots in rice.
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Molla K.A., Karmakar S., Chanda P.K., Ghosh S., Sarkar S.N., Datta S.K., Datta K.
Mol. Plant Pathol. 2013 14(9) 910-22
Rice oxalate oxidase gene driven by green tissue-specific promoter increases tolerance to sheath blight pathogen (Rhizoctonia solani) in transgenic rice.
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Rawal H.C., Singh N.K., Sharma T.R.
International Journal of Genomics 2013 2013 678969
Conservation, divergence, and genome-wide distribution of PAL and POX A gene families in plants
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Yamaguchi K., Yamada K., Ishikawa K., Yoshimura S., Hayashi N., Uchihashi K., Ishihama N., Kishi-Kaboshi M., Takahashi A., Tsuge S., Ochiai H., Tada Y., Shimamoto K., Yoshioka H., Kawasaki T.
Cell Host Microbe 2013 13(3) 347-57
A receptor-like cytoplasmic kinase targeted by a plant pathogen effector is directly phosphorylated by the chitin receptor and mediates rice immunity.
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Mou S., Liu Z., Guan D., Qiu A., Lai Y., He S.
PLoS ONE 2013 8(3) e59699
Functional Analysis and Expressional Characterization of Rice Ankyrin Repeat-Containing Protein, OsPIANK1, in Basal Defense against Magnaporthe oryzae Attack.
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Feng B.H., Yang Y., Shi Y.F., Shen H.C., Wang H.M., Huang Q.N., Xu X., Lü XG., Wu J.L.
J Integr Plant Biol 2013 55(5) 473-83
Characterization and Genetic Analysis of a Novel Rice Spotted-leaf Mutant HM47 with Broad-spectrum Resistance to Xanthomonas oryzae pv. oryzae.
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Wamaitha M.J., Yamamoto R., Wong H.L., Kawasaki T., Kawano Y., Shimamoto K.
Rice (N Y) 2012 5 35
OsRap2.6 transcription factor contributes to rice innate immunity through its interaction with receptor for activated Kinase-C 1 (RACK1)
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Giberti S., Bertea C.M., Narayana R., Maffei M.E., Forlani G.
J. Plant Physiol. 2012 169(3) 249-54
Two phenylalanine ammonia lyase isoforms are involved in the elicitor-induced response of rice to the fungal pathogen Magnaporthe oryzae.
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Chen M., Zeng H., Qiu D., Guo L., Yang X., Shi H., Zhou T., Zhao J.
PLoS ONE 2012 7(5) e37654
Purification and characterization of a novel hypersensitive response-inducing elicitor from Magnaporthe oryzae that triggers defense response in rice.
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Kim S.H., Oikawa T., Kyozuka J., Wong H.L., Umemura K., Kishi-Kaboshi M., Takahashi A., Kawano Y., Kawasaki T., Shimamoto K.
Plant Cell Physiol. 2012 53(4) 740-54
The bHLH Rac Immunity1 (RAI1) Is Activated by OsRac1 via OsMAPK3 and OsMAPK6 in Rice Immunity.
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Park C.H., Chen S., Shirsekar G., Zhou B., Khang C.H., Songkumarn P., Afzal A.J., Ning Y., Wang R., Bellizzi M., Valent B., Wang G.L.
Plant Cell 2012 24(11) 4748-62
The Magnaporthe oryzae effector AvrPiz-t targets the RING E3 ubiquitin ligase APIP6 to suppress pathogen-associated molecular pattern-triggered immunity in rice.
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Peng D.H., Qiu D.W., Ruan L.F., Zhou C.F., Sun M.
Mol. Plant Microbe Interact. 2011 24(10) 1239-46
Protein elicitor PemG1 from Magnaporthe grisea induces systemic acquired resistance (SAR) in plants.
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Xie X.Z., Xue Y.J., Zhou J.J., Zhang B., Chang H., Takano M.
Mol Plant 2011 4(4) 688-96
Phytochromes regulate SA and JA signaling pathways in rice and are required for developmentally controlled resistance to Magnaporthe grisea.
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Chen L.
Thesis 2010
Rac/Rop Small GTPases in Rice Innate Immunity
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Chen L., Hamada S., Fujiwara M., Zhu T., Nguyen Phuong Thao, Hann Ling Wong, Krishna P., Ueda T., Kaku H., Shibuya N., Kawasaki T., Shimamoto K.
Cell Host Microbe 2010 7(3) 185-96
The Hop/Sti1-Hsp90 chaperone complex facilitates the maturation and transport of a PAMP receptor in rice innate immunity.
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Rakwal R., Ganesh Kumar Agrawal, Shibato J., Imanaka T., Fukutani S., Tamogami S., Endo S., Sarata Kumar Sahoo, Masuo Y., Kimura S.
Int J Mol Sci 2009 10(3) 1215-25
Ultra low-dose radiation: stress responses and impacts using rice as a grass model.
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Lin YZ,Chen HY,Kao R,Chang SP,Chang SJ,Lai EM
Phytochemistry 2008 69 715-28
Proteomic analysis of rice defense response induced by probenazole.
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Sudo E., Itouga M., Kayo Yoshida-Hatanaka, Ono Y., Sakakibara H.
J. Exp. Bot. 2008 59(12) 3465-74
Gene expression and sensitivity in response to copper stress in rice leaves.
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Qiu,D., Xiao,J., Ding,X., Xiong,M., Cai,M., Cao,Y., Li,X., Xu,C. and Wang,S.
Mol. Plant Microbe Interact. 2007 20(5) 492-499
OsWRKY13 mediates rice disease resistance by regulating defense-related genes in salicylate- and jasmonate-dependent signaling
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Wang,G., Ding,X., Yuan,M., Qiu,D., Li,X., Xu,C. and Wang,S.
Plant Mol. Biol. 2006 60(3) 437-449
Dual function of rice OsDR8 gene in disease resistance and thiamine accumulation.
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Xiao Qiang Liu, Xian Quan Bai, Qian Q., Xiu Jie Wang, Ming Sheng Chen, Cheng Cai Chu
Cell Res. 2005 15(8) 593-603
OsWRKY03, a rice transcriptional activator that functions in defense signaling pathway upstream of OsNPR1.
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L Wang, C An, W Qian, T Liu, J Li, Z Chen
Plant Cell Rep. 2004 22(7) 513-8
Detection of the putative cis-region involved in the induction by a Pyricularia oryzae elicitor of the promoter of a gene encoding phenylalanine ammonia-lyase in rice.
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Zhu,Q., Ordiz,M.I., Dabi,T., Beachy,R.N. and Lamb,C.
Plant Cell 2002 14(4) 795-803
Rice TATA Binding Protein Interacts Functionally with Transcription Factor IIB and the RF2a bZIP Transcriptional Activator in an Enhanced Plant in Vitro Transcription System.
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Sakurai N., Katayama Y., Yamaya T.
Physiol Plant 2001 113(3) 400-408
Overlapping expression of cytosolic glutamine synthetase and phenylalanine ammonia-lyase in immature leaf blades of rice.
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Z He, Z Y Wang, J Li, Q Zhu, C Lamb, P Ronald, J Chory
Science 2000 288(5475) 2360-3
Perception of brassinosteroids by the extracellular domain of the receptor kinase BRI1.
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I Blilou, J A Ocampo, J M García-Garrido
J. Exp. Bot. 2000 51(353) 1969-77
Induction of LTP (lipid transfer protein) and PAL (phenylalanine ammonia-lyase) gene expression in rice roots colonized by the arbuscular mycorrhizal fungus Glomus mosseae.
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Q Zhu, J Chappell, S A Hedrick, C Lamb
Plant J. 1995 7(6) 1021-30
Accurate in vitro transcription from circularized plasmid templates by plant whole cell extracts.
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Q Zhu, T Dabi, C Lamb
Plant Cell 1995 7(10) 1681-9
TATA box and initiator functions in the accurate transcription of a plant minimal promoter in vitro.
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Zhu,Q., Dabi,T., Beeche,A., Yamamoto,R., Lawton,M.A. and Lamb,C.
Plant Mol. Biol. 1995 29(3) 535-550
Cloning and properties of a rice gene encoding phenylalanine ammonia-lyase.
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DB Reference
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Gramene ID
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GR:0060593
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Ontologies
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Gene Ontology
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cinnamic acid biosynthetic process( GO:0009800 )
response to salicylic acid stimulus( GO:0009751 )
response to gamma radiation( GO:0010332 )
defense response( GO:0006952 )
response to copper ion( GO:0046688 )
cytoplasm( GO:0005737 )
L-phenylalanine catabolic process( GO:0006559 )
response to herbicide( GO:0009635 )
defense response to insect( GO:0002213 )
defense response to fungus( GO:0050832 )
response to estradiol stimulus( GO:0032355 )
response to molecule of bacterial origin( GO:0002237 )
defense response to bacterium( GO:0042742 )
response to molecule of fungal origin( GO:0002238 )
inflorescence development( GO:0010229 )
phenylalanine ammonia-lyase activity( GO:0045548 )
salicylic acid biosynthetic process( GO:0009697 )
response to symbiotic bacterium( GO:0009609 )
response to chitin( GO:0010200 )
defense response to nematode( GO:0002215 )
anthocyanin biosynthetic process( GO:0009718 )
phenylpropanoid biosynthetic process( GO:0009699 )
response to water deprivation( GO:0009414 )
brassinosteroid mediated signaling( GO:0009742 )
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Trait Ontology
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brown planthopper resistance( TO:0000424 )
blast disease( TO:0000074 )
copper sensitivity( TO:0000021 )
fungal blight disease resistance( TO:0000664 )
jasmonic acid sensitivity( TO:0000172 )
plant growth hormone sensitivity( TO:0000401 )
ethylene sensitivity( TO:0000173 )
phytochemical compound content( TO:0000674 )
leaf blast disease resistance( TO:0000468 )
bacterial blight disease resistance( TO:0000175 )
sheath blight disease resistance( TO:0000255 )
bacterial disease resistance( TO:0000315 )
herbicide sensitivity( TO:0000058 )
pollen fertility( TO:0000421 )
hydrogen peroxide content( TO:0000605 )
anthocyanin content( TO:0000071 )
leaf color( TO:0000326 )
nematode damage resistance( TO:0000384 )
ferulic acid content( TO:0000675 )
drought tolerance( TO:0000276 )
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Plant Ontology
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inflorescence development stage( PO:0001083 )
root( PO:0009005 )
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Related Strains
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Phenotype images
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Last updated
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Mar 21, 2026
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Update info.