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Basic Information
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CGSNL Gene Symbol
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PAD4
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Gene Symbol Synonym
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OsPAD4
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CGSNL Gene Name
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PHYTOALEXIN DEFICIENT 4
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Gene Name Synonym
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phytoalexin deficient 4
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Protein Name
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Allele
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pad4
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Chromosome No.
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11
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Explanation
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CX118864. a rice ortholog of Arabidopsis phytoalexin deficient 4 (AtPAD4). TO:0020093: nitrogen content. GO:1900367: positive regulation of defense response to insect. GO:2000031: regulation of salicylic acid mediated signaling pathway. GO:2000022: regulation of jasmonic acid mediated signaling pathway. GO:1901698: response to nitrogen compound.
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Trait Class
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Tolerance and resistance
Tolerance and resistance - Insect resistance
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Biochemical character
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK243523
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MSU ID
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LOC_Os11g09010.1
LOC_Os11g09010.2
LOC_Os11g09010.3
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RAP ID
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Os11g0195500
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Fang L., Su R., Li C., Liu X., Song Y., Zeng R., Wang Q., Cui H., Chen D.
Plants (Basel) 2025 14(11)
OsEDS1 and OsPAD4 Are Involved in Brown Planthopper Resistance in Rice.
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Xia S., Liu Y., Wang J., Li C., Wang M., Liu H., Zheng H., Yang L., Zou D., Xin W., Wang J.
Sci Rep 2025 15(1) 33190
Mapping of low-nitrogen tolerance genes in Japonica rice at seedling stage by genome-wide association study.
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Liu W.Z., Li Z.Y., Liu C., Yu X.T., Yu W.Q., Li P.
Genome 2023 66(6) 131-149
<i>Paenibacillus terrae</i> NK3-4 regulates the transcription of growth-related and stress resistance-related genes in rice.
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Patel A., Sahu K.P., Mehta S., Balamurugan A., Kumar M., Sheoran N., Kumar S., Krishnappa C., Ashajyothi M., Kundu A., Goyal T., Narayanasamy P., Kumar A.
Front Microbiol 2022 13 1035602
Rice leaf endophytic <i>Microbacterium testaceum</i>: Antifungal actinobacterium confers immunocompetence against rice blast disease.
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Sahu K.P., Kumar A., Sakthivel K., Reddy B., Kumar M., Patel A., Sheoran N., Gopalakrishnan S., Prakash G., Rathour R., Gautam R.K.
Environ Microbiome 2022 17(1) 28
Deciphering core phyllomicrobiome assemblage on rice genotypes grown in contrasting agroclimatic zones: implications for phyllomicrobiome engineering against blast disease.
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Sahu K.P., Patel A., Kumar M., Sheoran N., Mehta S., Reddy B., Eke P., Prabhakaran N., Kumar A.
Front Microbiol 2021 12 780458
Integrated Metabarcoding and Culturomic-Based Microbiome Profiling of Rice Phyllosphere Reveal Diverse and Functional Bacterial Communities for blast disease Suppression.
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Ke Y., Kang Y., Wu M., Liu H., Hui S., Zhang Q., Li X., Xiao J., Wang S.
Rice (N Y) 2019 12(1) 25
Jasmonic Acid-Involved OsEDS1 Signaling in Rice-Bacteria Interactions.
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Liu Q., Li X., Yan S., Yu T., Yang J., Dong J., Zhang S., Zhao J., Yang T., Mao X., Zhu X., Liu B.
BMC Plant Biol. 2018 18(1) 257
OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.
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Ma J., Chen J., Wang M., Ren Y., Wang S., Lei C., Cheng Z., Sodmergen
J. Exp. Bot. 2018 69(5) 1051-1064
Disruption of OsSEC3A increases the content of salicylic acid and induces plant defense responses in rice.
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Lu H.P., Luo T., Fu H.W., Wang L., Tan Y.Y., Huang J.Z., Wang Q., Ye G.Y., Gatehouse A.M.R., Lou Y.G., Shu Q.Y.
Nat Plants 2018 4(6) 338-344
Resistance of rice to insect pests mediated by suppression of serotonin biosynthesis.
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Chen Z., Chen T., Sathe A.P., He Y., Zhang X.B., Wu J.L.
Int J Mol Sci 2018 19(12)
Identification of a Novel Semi-Dominant Spotted-Leaf Mutant with Enhanced Resistance to <i>Xanthomonas</i><i>oryzae</i> pv. <i>oryzae</i> in Rice.
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Xu X., Chen Z., Shi Y.F., Wang H.M., He Y., Shi L., Chen T., Wu J.L., Zhang X.B.
BMC Plant Biol. 2018 18(1) 264
Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice.
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Kuang J., Liu J., Mei J., Wang C., Hu H., Zhang Y., Sun M., Ning X., Xiao L., Yang L.
Sci Rep 2017 7(1) 11333
A Class II small heat shock protein OsHsp18.0 plays positive roles in both biotic and abiotic defense responses in rice.
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Wang L., Ye, Liu H., Liu X., Wei C., Huang Y., Liu Y., Tu J.
Sci Rep 2016 6 24079
Both overexpression and suppression of an Oryza sativa NB-LRR-like gene OsLSR result in autoactivation of immune response and thiamine accumulation.
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Zhu J., Liang J., Xu Z., Fan X., Zhou Q., Shen Q., Xu G.
AoB Plants 2015 7
Root aeration improves growth and nitrogen accumulation in rice seedlings under low nitrogen.
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Ke Y., Liu H., Li X., Xiao J., Wang S.
Plant J. 2014 78(4) 619-31
Rice OsPAD4 functions differently from Arabidopsis AtPAD4 in host-pathogen interactions.
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Xie X.Z., Xue Y.J., Zhou J.J., Zhang B., Chang H., Takano M.
Mol Plant 2011 4(4) 688-96
Phytochromes regulate SA and JA signaling pathways in rice and are required for developmentally controlled resistance to Magnaporthe grisea.
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Tao Z,Liu H,Qiu D,Zhou Y,Li X,Xu C,Wang S
Plant Physiol. 2009 151(2) 936-48
A pair of allelic WRKY genes play opposite roles in rice-bacteria interactions.
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Xiao,W., Liu,H., Li,Y., Li,X., Xu,C., Long,M. and Wang,S.
PLoS One 2009 4 (2) E4603
A rice gene of de novo origin negatively regulates pathogen-induced defense response
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Qiu,D., Xiao,J., Ding,X., Xiong,M., Cai,M., Cao,Y., Li,X., Xu,C. and Wang,S.
Mol. Plant Microbe Interact. 2007 20(5) 492-499
OsWRKY13 mediates rice disease resistance by regulating defense-related genes in salicylate- and jasmonate-dependent signaling
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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triacylglycerol lipase activity( GO:0004806 )
lipid metabolic process( GO:0006629 )
ethylene biosynthetic process( GO:0009693 )
aerenchyma formation( GO:0010618 )
plasma membrane( GO:0005886 )
response to wounding( GO:0009611 )
jasmonic acid mediated signaling pathway( GO:0009867 )
defense response to bacterium( GO:0042742 )
defense response to insect( GO:0002213 )
response to bacterium( GO:0009617 )
response to symbiotic bacterium( GO:0009609 )
regulation of jasmonic acid biosynthetic process( GO:0080141 )
salicylic acid mediated signaling pathway( GO:0009863 )
regulation of salicylic acid biosynthetic process( GO:0080142 )
cellular response to nitrogen starvation( GO:0006995 )
response to starvation( GO:0042594 )
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Trait Ontology
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bacterial blight disease resistance( TO:0000175 )
jasmonic acid content( TO:0002668 )
momilactone A content( TO:0002670 )
jasmonic acid sensitivity( TO:0000172 )
brown planthopper resistance( TO:0000424 )
growth hormone content( TO:0000476 )
nitrogen sensitivity( TO:0000011 )
relative root dry weight( TO:0000644 )
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Plant Ontology
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Related Strains
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Phenotype images
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Last updated
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Dec 15, 2025
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Update info.