Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol SHAT1
Gene Symbol Synonym OsSHAT1, AP2/EREBP#043, AP2/EREBP43, AP2-5, DLN124, OsDLN124, ObSHAT1, OgSHAT1, OrSHAT1
CGSNL Gene Name SHATTERING ABORTION 1
Gene Name Synonym SHATTERING ABORTION1, shattering abortion 1, APETALA2/ethylene-responsive element binding protein 43, APETALA2-5, DLN repressor 124, DLN motif protein 124
Protein Name _
Allele shat1
Chromosome No. 4
Explanation FO082280. an APETALA2 transcription factor. AP2 family TF gene. AP2-5 in Dai et al. 2016. TO:0000930: seed shattering.
Trait Class Seed - Physiological traits - Shattering
Tolerance and resistance - Stress tolerance
Expression
Sequence/Locus
cDNA Accession No. AK099991
MSU ID LOC_Os04g55560.2
LOC_Os04g55560.3
LOC_Os04g55560.4
RAP ID Os04g0649100
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Mun B.G., Shahid M., Lee G.S., Hussain A., Yun B.W.
Int J Mol Sci 2022  23(21) 
A Novel rhs1 Locus in Rice Attributes Seed-Pod SHATTERING by the Regulation of Endogenous S-Nitrosothiols.
Shang L., Li X., He H., Yuan Q., Song Y., Wei Z., Lin H., Hu M., Zhao F., Zhang C., Li Y., Gao H., Wang T., Liu X., Zhang H., Zhang Y., Cao S., Yu X., Zhang B., Zhang Y., Tan Y., Qin M., Ai C., Yang Y., Zhang B., Hu Z., Wang H., Lv Y., Wang Y., Ma J., Wang Q., Lu H., Wu Z., Liu S., Sun Z., Zhang H., Guo L., Li Z., Zhou Y., Li J., Zhu Z., Xiong G., Ruan J., Qian Q.
Cell Res. 2022  32(10)  878-896
A super pan-genomic landscape of rice.
Li M., Fu D., Xu T., Wu C.
Int J Mol Sci 2021  22(15) 
<i>VPB1</i> Encoding BELL-like homeodomain Protein Is Involved in Rice Panicle Architecture.
Singh P., Mathew I.E., Verma A., Tyagi A.K., Agarwal P.
Int J Mol Sci 2019  20(7) 
Analysis of Rice Proteins with DLN repressor Motif/S.
Dai Z., Wang J., Zhu M., Miao X., Shi Z.
Front Plant Sci 2016  7  1891
OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
Yoon J., Cho L.H., Kim S.L., Choi H., Koh H.J., An G.
Plant J. 2014  79(5)  717-28
The BEL1-type homeobox gene SH5 induces Seed shattering by enhancing abscission-zone development and inhibiting lignin biosynthesis.
Nakano T., Ito Y.
Plant Biotechnology 2013  30  209-216
Molecular mechanisms controlling plant organ abscission
Hofmann N.R.
Plant Cell 2012  24(3)  839
SHAT1, A New Player in Seed Shattering of Rice.
Zhou Y., Lu D., Li C., Luo J., Zhu B.F., Zhu J., Shangguan Y., Wang Z., Sang T., Zhou B., Han B.
Plant Cell 2012  24(3)  1034-48
Genetic Control of Seed SHATTERING in Rice by the APETALA2 transcription factor SHATTERING ABORTION1.
Rashid M., Guangyuan H., Guangxiao Y., Hussain J., Xu Y.
Evol. Bioinform. Online 2012  8  321-355
AP2/ERF Transcription Factor in Rice: Genome-Wide Canvas and Syntenic Relationships between Monocots and Eudicots.
Zhou,Y., Lu,D.F., Li,C.Y., Luo,J.H., Zhu,B., Zhu,J.J., Shangguan,Y.Y., Wang,Z.X., Sang,T., Zhou,B. and Han,B.
Plant Cell 2012  24(3)  1034-1048
Genetic Control of Seed Shattering in Rice by the APETALA2 Transcription Factor SHATTERING ABORTION1
DB Reference
Gramene ID -
Ontologies
Gene Ontology DNA binding( GO:0003677 )
transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
transcription, DNA-dependent( GO:0006351 )
response to nitrosative stress( GO:0051409 )
Trait Ontology grain shattering( TO:0000473 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Oct 26, 2023

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