Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol CMT2
Gene Symbol Synonym OsCMT2, OsCMT3a, CMT3a
CGSNL Gene Name CHROMOMETHYLTRANSFERASE 2
Gene Name Synonym chromomethyltransferase 2, chromomethylase 3a, CHG methyltransferase 3a
Protein Name CHROMOMETHYLTRANSFERASE 2
Allele oscmt3a, oscmt3a-1, oscmt3a-2, cmt3a
Chromosome No. 10
Explanation AB360583 OsCMT3a in Cheng et al. 2015, Wang et al. 2018, Hu et al. 2021, Li et al. 2024. a functional orthologue of ZMET2 and CMT3. the orthologs of ZMET2 and ZMET5. GO:0090116 C-5 methylation of cytosine.
Trait Class Biochemical character
Tolerance and resistance - Stress tolerance
Character as QTL - Plant growth activity
Reproductive organ - Pollination, fertilization, fertility - Sterility
Expression
Sequence/Locus
cDNA Accession No. AK112062
MSU ID LOC_Os10g01570.1
RAP ID Os10g0104900
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Li X., Zhu B., Lu Y., Zhao F., Liu Q., Wang J., Ye M., Chen S., Nie J., Xiong L., Zhao Y., Wu C., Zhou D.X.
Genome Biol. 2024  25(1)  84
DNA methylation remodeling and the functional implication during male gametogenesis in rice.
Hu D., Yu Y., Wang C., Long Y., Liu Y., Feng L., Lu D., Liu B., Jia J., Xia R., Du J., Zhong X., Gong L., Wang K., Zhai J.
Plant Cell 2021   
Multiplex CRISPR-Cas9 editing of DNA methyltransferases in rice uncovers a class of non-CG methylation specific for GC-rich regions.
Liu X.S., Feng S.J., Zhang B.Q., Wang M.Q., Cao H.W., Rono J.K., Chen X., Yang Z.M.
BMC Plant Biol. 2019  19(1)  283
OsZIP1 functions as a metal efflux transporter limiting excess zinc, copper and cadmium accumulation in rice.
Wang L., Yuan J., Ma Y., Jiao W., Ye W., Yang D.L., Yi C., Chen Z.J.
Mol Plant 2018  11(2)  300-314
Rice Interploidy Crosses Disrupt Epigenetic Regulation, Gene Expression, and Seed Development.
Cheng C., Tarutani Y., Miyao A., Ito T., Yamazaki M., Sakai H., Fukai E., Hirochika H.
Plant J. 2015   
Loss of function mutations in the rice chromomethylase OsCMT3a cause a burst of transposition.
Sharma R., R K Mohan Singh, Malik G., Deveshwar P., Akhilesh K Tyagi, Kapoor S., Kapoor M.
FEBS J. 2009  276(21)  6301-11
Rice cytosine DNA methyltransferases - gene expression profiling during reproductive development and abiotic stress.
DB Reference
Gramene ID -
Ontologies
Gene Ontology DNA binding( GO:0003677 )
DNA (cytosine-5-)-methyltransferase activity( GO:0003886 )
nucleus( GO:0005634 )
chromatin silencing( GO:0006342 )
DNA mediated transformation( GO:0009294 )
zygote asymmetric cytokinesis in the embryo sac( GO:0010069 )
DNA methylation on cytosine within a CNG sequence( GO:0010425 )
histone H3-K9 methylation( GO:0051567 )
DNA methylation( GO:0006306 )
developmental process( GO:0032502 )
DNA methylation on cytosine( GO:0032776 )
negative regulation of transposon integration( GO:0070895 )
response to cadmium ion( GO:0046686 )
DNA methylation on cytosine within a CHH sequence( GO:0010426 )
methylation-dependent chromatin silencing( GO:0006346 )
pollen development( GO:0009555 )
DNA-methyltransferase activity( GO:0009008 )
transposition( GO:0032196 )
Trait Ontology growth and development trait( TO:0000357 )
sterility related trait( TO:0000485 )
pollen fertility( TO:0000421 )
Plant Ontology pollen development stage( PO:0001007 )
plant egg cell( PO:0020094 )
plant zygote( PO:0000423 )
Related Strains
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Phenotype images
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Last updated
Sep 11, 2024

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