Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol _
Gene Symbol Synonym gh1, GH1, OsGH1, OsCHI, Cfi, CHI
CGSNL Gene Name _
Gene Name Synonym gold hull and internode 1, chalcone isomerase, chalcone flavonone isomerase, chalcone-flavonone isomerase
Protein Name
Allele gh1
Chromosome No. 3
Explanation Q84T92. AF474922. lodging resistance.
Trait Class Tolerance and resistance - Stress tolerance
Biochemical character
Vegetative organ - Culm
Coloration - Anthocyanin
Coloration - Others
Tolerance and resistance - Insect resistance
cDNA Accession No. AK061390
MSU ID LOC_Os03g60509.1
RAP ID Os03g0819600
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Dong N.Q., Sun Y., Guo T., Shi C.L., Zhang Y.M., Kan Y., Xiang Y.H., Zhang H., Yang Y.B., Li Y.C., Zhao H.Y., Yu H.X., Lu Z.Q., Wang Y., Ye W.W., Shan J.X., Lin H.X.
Nat Commun 2020  11(1)  2629
UDP-glucosyltransferase regulates grain size and abiotic stress tolerance associated with metabolic flux redirection in rice.
Zheng J., Wu H., Zhu H., Huang C., Liu C., Chang Y., Kong Z., Zhou Z., Wang G., Lin Y., Chen H.
New Phytol. 2019  223(2)  705-721
Determining factors, regulation system, and domestication of anthocyanin biosynthesis in rice leaves.
Zaidi S.H.R., Zakari S.A., Zhao Q., Khan A.R., Shah J.M., Cheng F.
Antioxidants (Basel) 2019  8(11) 
Anthocyanin Accumulation in Black Kernel Mutant Rice and its Contribution to ROS Detoxification in Response to High Temperature at the Filling Stage.
Oshima M., Taniguchi Y., Akasaka M., Abe K., Ichikawa H., Tabei Y., Tanaka J.
Breed. Sci. 2019  69(2)  244-254
Development of a visible marker trait based on leaf sheath-specific anthocyanin pigmentation applicable to various genotypes in rice.
Miyamoto T., Takada R., Tobimatsu Y., Takeda Y., Suzuki S., Yamamura M., Osakabe K., Osakabe Y., Sakamoto M., Umezawa T.
Plant J. 2019  98(6)  975-987
OsMYB108 loss-of-function enriches p-coumaroylated and tricin lignin units in rice cell walls.
Chen X., Tao Y., Ali A., Zhuang Z., Guo D., Guo Q., Riaz A., Zhang H., Xu P., Liao Y., Wang J., Sun C., Xiang Q., Wu X.
Int J Mol Sci 2019  20(10) 
Transcriptome and Proteome Profiling of Different Colored Rice Reveals Physiological Dynamics Involved in the Flavonoid Pathway.
Nanda S., Wan P.J., Yuan S.Y., Lai F.X., Wang W.X., Fu Q.
Int J Mol Sci 2018  19(12) 
Differential Responses of <i>OsMPK</i>s in IR56 Rice to Two BPH Populations of Different Virulence Levels.
Hirano K., Masuda R., Takase W., Morinaka Y., Kawamura M., Takeuchi Y., Takagi H., Yaegashi H., Natsume S., Terauchi R., Kotake T., Matsushita Y., Sazuka T.
Planta 2017   
Screening of rice mutants with improved saccharification efficiency results in the identification of CONSTITUTIVE PHOTOMORPHOGENIC 1 and GOLD HULL AND INTERNODE 1.
Chen X., Itani T., Wu X., Chikawa Y., Irifune K.
Plant Signal Behav 2013  8(12)  e27555
Physiological factors affecting transcription of genes involved in the flavonoid biosynthetic pathway in different rice varieties.
Ogo Y., Ozawa K., Ishimaru T., Murayama T., Takaiwa F.
Plant Biotechnol. J. 2013  11(6)  734-46
Transgenic rice seed synthesizing diverse flavonoids at high levels: a new platform for flavonoid production with associated health benefits.
Hong L., Qian Q., Tang D., Wang K., Li M., Cheng Z.
Planta 2012  236(1)  141-51
A mutation in the rice chalcone isomerase gene causes the golden hull and internode 1 phenotype.
Shih CH, Chu H, Tang LK, Sakamoto W, Maekawa M, Chu IK, Wang M, Lo C.
Planta. 2008  228(6)  1043-54.
Functional characterization of key structural genes in rice flavonoid biosynthesis.
Druka,A., Kudrna,D., Rostoks,N., Brueggeman,R., D. and Kleinhofs,A.
Gene 2003  302(1-2)  171-178
Chalcone isomerase gene from rice (Oryza sativa) and barley (Hordeum vulgare): physical, genetic and mutation mapping.
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DB Reference
Gramene ID -
Gene Ontology flavonoid biosynthetic process( GO:0009813 )
chalcone isomerase activity( GO:0045430 )
response to light stimulus( GO:0009416 )
lignin biosynthetic process( GO:0009809 )
response to abiotic stimulus( GO:0009628 )
defense response to insect( GO:0002213 )
defense response, incompatible interaction( GO:0009814 )
anthocyanin biosynthetic process( GO:0009718 )
seed development( GO:0048316 )
Trait Ontology light sensitivity( TO:0000075 )
pericarp color( TO:0000707 )
culm color( TO:0000534 )
pigment content( TO:0000494 )
grain yield( TO:0000396 )
abiotic stress trait( TO:0000168 )
lignin content( TO:0000731 )
lignin biosynthesis trait( TO:0000733 )
flavonoid content( TO:0000290 )
ferulic acid content( TO:0000675 )
brown planthopper resistance( TO:0000424 )
seed development trait( TO:0000653 )
stem strength( TO:0000051 )
Plant Ontology seed development stage( PO:0001170 )
Related Strains
Phenotype images
Last updated
Aug 31, 2020