Update info.Gene - Detail
Detail of Gene
| Basic Information | |
|---|---|
| CGSNL Gene Symbol | CBSCLC5 |
| Gene Symbol Synonym | OsCBSCLC5, OsCLC5, CLC5 |
| CGSNL Gene Name | CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 5 |
| Gene Name Synonym | cystathionine b-synthase domain containing protein OsCBSCLC5, CBS domain containing protein OsCBSCLC5, CBS domain containing protein 5, chloride channel 5 |
| Protein Name | CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 5 |
| Allele | |
| Chromosome No. | 4 |
| Explanation | These CBSCLC proteins belong to chloride channel protein (CLC) family. CBSCLC for proteins containing one CBS domain and a CLC domain. O. barthii: OBART04G27250, O. brachyantha: OB04G34170, O. glaberrima: ORGLA04G0235000, O. rufipogon: ORUFI04G28900, O. punctata: OPUNC04G24730, O. nivara: ONIVA04G25550, O. meridionalis: OMERI04G22690, O. longistaminata: KN538912.1_FGP009, O. sativa indica: BGIOSGA017236, O. glumaepatula: OGLUM04G27200. |
| Trait Class |
Tolerance and resistance - Stress tolerance
|
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. |
AK318566
|
| MSU ID |
LOC_Os04g55210.1
|
| RAP ID |
Os04g0644800 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
|
INSD Accession List (Test version) |
- |
| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
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Olga I Nedelyaeva, Larissa G Popova, Dmitrii E Khramov, Vadim S Volkov, Yurii V Balnokin
Int J Mol Sci 2023 24(2) Chloride Channel Family in the Euhalophyte <i>Suaeda altissima</i> (L.) Pall: Cloning of Novel Members SaCLCa2 and SaCLCc2, General Characterization of the Family.
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Tomar S., Subba A., Bala M., Singh A.K., Pareek A., Singla-Pareek SL.
Int J Mol Sci 2022 23(3) Genetic Conservation of CBS Domain Containing Protein Family in <i>Oryza</i> Species and Their Association with Abiotic Stress Responses.
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Neang S., Goto I., Skoulding N.S., Cartagena J.A., Kano-Nakata M., Yamauchi A., Mitsuya S.
BMC Plant Biol. 2020 20(1) 502 Tissue-specific expression analysis of Na+ and Cl- transporter genes associated with salt removal ability in rice leaf sheath.
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Hemant R Kushwaha, Anil K Singh, Sudhir K Sopory, Sneh L Singla-Pareek, Pareek A.
BMC Genomics 2009 10 200 Genome wide expression analysis of CBS domain containing proteins in Arabidopsis thaliana (L.) Heynh and Oryza sativa L. reveals their developmental and stress regulation.
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| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
response to cold( GO:0009409 )
response to salt stress( GO:0009651 ) membrane( GO:0016020 ) voltage-gated chloride channel activity( GO:0005247 ) |
| Trait Ontology |
cold tolerance( TO:0000303 )
salt tolerance( TO:0006001 ) |
| Plant Ontology |
leaf sheath( PO:0020104 )
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| Related Strains | |
| - | |
| Phenotype images | |
| - | |
| Last updated | |
| Mar 19, 2023 | |
