Update info.Gene - Detail
Detail of Gene
| Basic Information | |
|---|---|
| CGSNL Gene Symbol | CLC2 |
| Gene Symbol Synonym | CBSCLC3, OsCBSCLC3, OsCBSCLC3a, OsCBSCLC3b, OsCLC1, OsCLC-1, OsCLC2, OsCLC-2, CLC-2, OsCLC3, CLC3 |
| CGSNL Gene Name | CHLORIDE CHANNEL 2 |
| Gene Name Synonym | cystathionine b-synthase domain containing protein OsCBSCLC3, CBS domain containing protein OsCBSCLC3, CBS domain containing protein 3, Cl-channel 1, CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 3, ChLoride Channel 3 |
| Protein Name | CHLORIDE CHANNEL 2 |
| Allele | |
| Chromosome No. | 2 |
| Explanation | AB069967, AB069968. These CBSCLC proteins belong to chloride channel protein (CLC) family. CBSCLC for proteins containing one CBS domain and a CLC domain. O. barthii: OBART02G20670, O. brachyantha: OB02G28240, O. glaberrima: ORGLA02G0177300, O. rufipogon: ORUFI02G21700, O. punctata: OPUNC02G18580, O. nivara: ONIVA02G22650, O. meridionalis: OMERI02G20380, O. longistaminata: KN538737.1_FGP009, O. sativa indica: BGIOSGA006252, O. glumaepatula: OGLUM02G20940. OsCLC2 in Neang et al. 2020. OsCLC3 in Nedelyaeva et al. 2023. |
| Trait Class |
Biochemical character
Tolerance and resistance - Stress tolerance |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. |
AK066353
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| MSU ID |
LOC_Os02g35190.1
LOC_Os02g35190.2 |
| RAP ID |
Os02g0558100 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
|
INSD Accession List (Test version) |
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| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
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Olga I Nedelyaeva, Larissa G Popova, Dmitrii E Khramov, Vadim S Volkov, Yurii V Balnokin
Int J Mol Sci 2023 24(2) Chloride Channel Family in the Euhalophyte <i>Suaeda altissima</i> (L.) Pall: Cloning of Novel Members SaCLCa2 and SaCLCc2, General Characterization of the Family.
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Tomar S., Subba A., Bala M., Singh A.K., Pareek A., Singla-Pareek SL.
Int J Mol Sci 2022 23(3) Genetic Conservation of CBS Domain Containing Protein Family in <i>Oryza</i> Species and Their Association with Abiotic Stress Responses.
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Neang S., Goto I., Skoulding N.S., Cartagena J.A., Kano-Nakata M., Yamauchi A., Mitsuya S.
BMC Plant Biol. 2020 20(1) 502 Tissue-specific expression analysis of Na+ and Cl- transporter genes associated with salt removal ability in rice leaf sheath.
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Liu C., Mao B., Ou S., Wang W., Liu L., Wu Y., Chu C., Wang X.
Plant Mol. Biol. 2013 OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice.
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Hemant R Kushwaha, Anil K Singh, Sudhir K Sopory, Sneh L Singla-Pareek, Pareek A.
BMC Genomics 2009 10 200 Genome wide expression analysis of CBS domain containing proteins in Arabidopsis thaliana (L.) Heynh and Oryza sativa L. reveals their developmental and stress regulation.
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Nakamura,A., Fukuda,A., Sakai,S. and Tanaka,Y.
Plant Cell Physiol. 2006 47(1) 32-42 Molecular cloning, functional expression and subcellular localization of two putative vacuolar voltage-gated chloride channels in rice (Oryza sativa L.).
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| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
chloride channel activity( GO:0005254 )
response to hypoxia( GO:0001666 ) response to anoxia( GO:0034059 ) response to salt stress( GO:0009651 ) voltage-gated chloride channel activity( GO:0005247 ) integral to membrane( GO:0016021 ) |
| Trait Ontology |
oxygen sensitivity( TO:0000015 )
salt tolerance( TO:0006001 ) |
| Plant Ontology |
leaf sheath( PO:0020104 )
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| Related Strains | |
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| Phenotype images | |
| - | |
| Last updated | |
| Mar 19, 2023 | |
