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Basic Information
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CGSNL Gene Symbol
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YGL98
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Gene Symbol Synonym
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OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3, OsvWA12, vWA12
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CGSNL Gene Name
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YELLOW-GREEN LEAF 98
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Gene Name Synonym
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magnesium chelatase subunit ChlD, magnesium-chelatase ChlD subunit, yellow-green leaf mutant 98, yellow-green leaf 7, magnesium-chelatase ChlD protein, MgCh D subunit, D-subunit of Mg-chelatase, Mg-chelatase D subunit, yellow green leaf3, yellow green leaf 3, von Willebrand factor A12
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Protein Name
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Allele
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ygl98, Chlorina-1, Chl1, Ygl3, ygl3, ygl7, oschld
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Chromosome No.
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3
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Explanation
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Q6ATS0. YGL3 in Tian et al. 2013. YGL7 in Deng et al. 2014.
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Trait Class
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Biochemical character
Vegetative organ - Leaf
Coloration - Chlorophyll
Coloration - Others
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK072463
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MSU ID
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LOC_Os03g59640.1
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RAP ID
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Os03g0811100
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Qu M., Lin Y., Lin R., Song D., Zhang H., Yang F., Chen Z., Tang W., Han Y., Li W., Wang Z., Lu G., Chen S.
Rice (N Y) 2026 19(1)
Impairment of the Uroporphyrinogen Decarboxylase 2 gene Induces Lesion Mimicry and Downregulates Tetrapyrrole Biosynthesis Pathway Genes in Rice.
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Liu X., Deng X.J., Li C.Y., Xiao Y.K., Zhao K., Guo J., Yang X.R., Zhang H.S., Chen C.P., Luo Y.T., Tang Y.L., Yang B., Sun C.H., Wang P.R.
Int J Mol Sci 2022 23(10)
Mutation of Protoporphyrinogen IX Oxidase Gene Causes Spotted and rolled leaf and Its Overexpression Generates Herbicide Resistance in Rice.
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Suhas Gorakh KARKUTE, Vishesh KUMAR, Mohd TASLEEM, Dwijesh Chandra MISHRA, Krishna Kumar CHATURVEDI, Anil R.A.I., Amitha Mithra SEVANTHI, Kishor GAIKWAD, Tilak Raj Sharma, Amolkumar U. SOLANKE
Rice Science 2022 29(4) 375-384
Genome-Wide Analysis of von Willebrand factor A Gene Family in Rice for Its Role in Imparting Biotic Stress Resistance with Emphasis on Rice Blast Disease
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Qiu Z., Chen D., Teng L., Guan P., Yu G., Zhang P., Song J., Zeng Q., Zhu L.
Rice (N Y) 2022 15(1) 50
OsWHY1 Interacts with OsTRX z and is Essential for Early Chloroplast Development in Rice.
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Li J., Zhao T., Chen L., Chen H., Luo D., Chen C., Miao Y., Liu D.
BMC Plant Biol. 2022 22(1) 368
Artemisia argyi allelopathy: a generalist compromises hormone balance, element absorption, and photosynthesis of receptor plants.
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Zhou K., Zhang C., Xia J., Yun P., Wang Y., Ma T., Li Z.
Rice (N Y) 2021 14(1) 47
Albino seedling lethality 4; Chloroplast 30S Ribosomal Protein S1 is Required for Chloroplast Ribosome Biogenesis and Early Chloroplast Development in Rice.
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Wang Q., Zhu B., Chen C., Yuan Z., Guo J., Yang X., Wang S., Lv Y., Liu Q., Yang B., Sun C., Wang P., Deng X.
Rice (N Y) 2021 14(1) 50
A Single Nucleotide Substitution of GSAM Gene Causes Massive Accumulation of Glutamate 1-Semialdehyde and Yellow Leaf Phenotype in Rice.
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Huang W., Zhang Y., Shen L., Fang Q., Liu Q., Gong C., Zhang C., Zhou Y., Mao C., Zhu Y., Zhang J., Chen H., Zhang Y., Lin Y., Bock R., Zhou F.
New Phytol. 2020
Accumulation of the RNA polymerase subunit RpoB depends on RNA editing by OsPPR16 and affects chloroplast development during early leaf development in rice.
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Wang H., Shi Y., Zhang X., Xu X., Wu J.L.
Int J Mol Sci 2020 21(4)
Characterization of a Novel Rice Dynamic Narrow-rolled leaf Mutant with Deficiencies in Aromatic Amino Acids.
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Mohammad Hasanuzzaman Rani, Liu Q., Yu N., Zhang Y., Wang B., Cao Y., Zhang Y., Md Anowerul Islam, Workie Anley Zegeye, Cao L., Cheng S.
Plant Mol. Biol. 2020 102(4-5) 501-515
es5 is involved in the regulation of phosphatidylserine synthesis and impacts on early senescence in rice (Oryza sativa L.).
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Zhu X., Ze M., Yin J., Chern M., Wang M., Zhang X., Deng R., Li Y., Liao H., Wang L., Tu B., Song L., He M., Li S., Wang W.M., Chen X., Wang J., Li W.
Plant Sci. 2020 290 110295
A phosphofructokinase B-type carbohydrate kinase family protein, PFKB1, is essential for chloroplast development at early seedling stage in rice.
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Atul Prakash Sathe, Su X., Chen Z., Chen T., Wei X., Tang S., Xiao-Bo Zhang, Jian-Li Wu
Rice (N Y) 2019 12(1) 68
Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice.
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Liu Z., Wang Z., Gu H., You J., Hu M., Zhang Y., Zhu Z., Wang Y., Liu S., Chen L., Liu X., Tian Y., Zhou S., Jiang L., Liu L., Wan J.
Front Plant Sci 2018 9 782
Identification and Phenotypic Characterization of <i>ZEBRA LEAF16</i> Encoding a beta-hydroxyacyl-ACP dehydratase in Rice.
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He Y., Li L., Zhang Z., Wu J.L.
Int J Mol Sci 2018 19(1)
Identification and Comparative Analysis of Premature Senescence Leaf Mutants in Rice (Oryza sativa L.).
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Tran L.H., Jung S.
Int J Mol Sci 2017 18(3)
Effects of Light-Emitting Diode Irradiation on Growth Characteristics and Regulation of Porphyrin Biosynthesis in Rice Seedlings.
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Wang Y., Ren Y., Zhou K., Liu L., Wang J., Xu Y., Zhang H., Zhang L., Feng Z., Wang L., Ma W., Wang Y., Guo X., Zhang X., Lei C., Cheng Z., Wan J.
Front Plant Sci 2017 8 1116
WHITE STRIPE LEAF4 Encodes a Novel P-Type PPR Protein Required for Chloroplast Biogenesis during Early Leaf Development.
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Sheng Z., Lv Y., Li W., Luo R., Wei X., Xie L., Jiao G., Shao G., Wang J., Tang S., Hu P.
PLoS ONE 2017 12(5) e0177989
Yellow-Leaf 1 encodes a magnesium-protoporphyrin IX monomethyl ester cyclase, involved in chlorophyll biosynthesis in rice (Oryza sativa L.).
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WANG Zhong-wei, ZHANG Tian-quan, XING Ya-di ZENG Xiao-qin, WANG Ling, LIU Zhong-xian, SHI Jun-qiong, ZHU Xiao-yan, MA Ling, LI Yun-Feng, LING Ying-Hua, SANG Xian-chun, HE Guang-Hua
Journal of Integrative Agriculture 2015 15(5) 944-953
YGL9, encoding the putative chloroplast signal recognition particle 43 kDa protein in rice, is involved in chloroplast development
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Zhang H., Liu L., Cai M., Zhu S., Zhao J., Zheng T., Xu X., Zeng Z., Niu J., Jiang L., Chen S., Wan J.
Plant Mol. Biol. Rep. 2015 33 1975-1987
A Point Mutation of magnesium chelatase OsCHLI Gene Dampens the Interaction Between CHLI and CHLD Subunits in Rice
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Inagaki N., Kinoshita K., Kagawa T., Tanaka A., Ueno O., Shimada H., Takano M.
PLoS ONE 2015 10(8) e0135408
Phytochrome B Mediates the Regulation of Chlorophyll Biosynthesis through Transcriptional Regulation of ChlH and GUN4 in Rice Seedlings.
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Deng X.J., Zhang H.Q., Wang Y., He F., Liu J.L., Xiao X., Shu Z.F., Li W., Wang G.H., Wang G.L.
PLoS ONE 2014 9(6) e99564
Mapped clone and functional analysis of leaf-color gene ygl7 in a rice hybrid (Oryza sativa L. ssp. indica).
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Chen H., Cheng Z., Ma X., Wu H., Liu Y., Zhou K., Chen Y., Ma W., Bi J., Zhang X., Guo X., Wang J., Lei C., Wu F., Lin Q., Liu Y., Liu L., Jiang L.
Plant Cell Rep. 2013 32(12) 1855-67
A knockdown mutation of YELLOW-GREEN LEAF2 blocks chlorophyll biosynthesis in rice.
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Tian X., Ling Y., Fang L., Du P., Sang X., Zhao F., Li Y., Xie R., He G.
Genes Genomics 2013 35(1) 87-93
Gene cloning and functional analysis of yellow green leaf3 (ygl3) gene during the whole-plant growth stage in rice
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Zhou K., Ren Y., Lv J., Wang Y., Liu F., Zhou F., Zhao S., Chen S., Peng C., Zhang X., Guo X., Cheng Z., Wang J., Wu F., Jiang L., Wan J.
Planta 2013 237(1) 279-92
Young leaf chlorosis 1, a chloroplast-localized gene required for chlorophyll and lutein accumulation during early leaf development in rice.
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Zhou S., Sawicki A., Willows R.D., Luo M.
FEBS Lett. 2012 586(3) 205-10
C-terminal residues of oryza sativa GUN4 are required for the activation of the ChlH subunit of magnesium chelatase in chlorophyll synthesis.
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Sun X.Q., Wang B., Xiao Y.H., Wan C.M., Deng X.J., Wang P.R.
Acta Agronomica Sinica 2011 37 991-997
Genetic Analysis and Fine Mapping of Gene ygl98 for yellow-green leaf of Rice
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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tetrapyrrole biosynthetic process( GO:0033014 )
response to blue light( GO:0009637 )
chloroplast( GO:0009507 )
photosynthesis( GO:0015979 )
nucleoside-triphosphatase activity( GO:0017111 )
chloroplast organization( GO:0009658 )
ATP binding( GO:0005524 )
magnesium chelatase activity( GO:0016851 )
chlorophyll biosynthetic process( GO:0015995 )
response to other organism( GO:0051707 )
defense response to fungus( GO:0050832 )
defense response to bacterium( GO:0042742 )
response to water deprivation( GO:0009414 )
response to low light intensity stimulus( GO:0009645 )
response to gibberellin stimulus( GO:0009739 )
response to hormone stimulus( GO:0009725 )
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Trait Ontology
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leaf color( TO:0000326 )
blue light sensitivity( TO:0000159 )
chloroplast development trait( TO:0002715 )
sheath blight disease resistance( TO:0000255 )
bacterial blight disease resistance( TO:0000175 )
bacterial leaf streak disease resistance( TO:0000203 )
drought tolerance( TO:0000276 )
light intensity sensitivity( TO:0000460 )
gibberellic acid sensitivity( TO:0000166 )
plant growth hormone sensitivity( TO:0000401 )
chlorophyll content( TO:0000495 )
chlorophyll-a content( TO:0000293 )
chlorophyll-b content( TO:0000295 )
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Plant Ontology
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leaf( PO:0025034 )
leaf sheath( PO:0020104 )
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Related Strains
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Phenotype images
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Last updated
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Aug 17, 2026
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Update info.