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Basic Information
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CGSNL Gene Symbol
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SH11
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Gene Symbol Synonym
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OsJAmyb, JAmyb, OsJAMyb, OsMYB21, MYB21, Os2R_MYB91, 2R_MYB91, OgSH11, OsSH11, MYB2-109, OsMYB2-109
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CGSNL Gene Name
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SEED SHATTERING 11
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Gene Name Synonym
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JA-regulated myb transcription factor, R2R3-MYB Transcription Factor 91, Seed Shattering 11, R2R3-MYB transcription factor 2-109
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Protein Name
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JA-REGULATED MYB TRANSCRIPTION FACTOR
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Allele
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Osmyb21
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Chromosome No.
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11
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Explanation
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AY026332. CB621845. R2R3-MYB. defense-related transcription factor control gene. a brassinosteroid-response gene. the candidate gene for qBBR11-4. target of Osa-miR531. OgSH11 (a MYB transcription factor controlling seed shattering in O. glaberrima): Ogla0133M13.36, BBF89581.1. GO:0098542: defense response to other organism. GO:1900140: regulation of seedling development. GO:1900425: negative regulation of defense response to bacterium. TO:0000930: seed shattering. GO:1901141: regulation of lignin biosynthetic process. GO:1900057: positive regulation of leaf senescence.
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Trait Class
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Vegetative organ - Leaf
Seed - Physiological traits - Shattering
Tolerance and resistance - Disease resistance
Tolerance and resistance - Insect resistance
Tolerance and resistance - Stress tolerance
Character as QTL - Plant growth activity
Other
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK069082
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MSU ID
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LOC_Os11g45740.1
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RAP ID
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Os11g0684000
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
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Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Peng W., Zhang Y., Xie H., Yu Y., Zhu M.
Front Plant Sci 2025 16 1668800
Research progress on the synergistic regulation of MYB transcription factor-mediated developmental plasticity and stress responses in rice.
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Zhao H., Ji Y., Jiang Y., Liang X., Qiao Y., Chen F., Wu L., Yu Y., Ma D.
Plants (Basel) 2025 14(12)
Identification and Expression Analysis of Rice MYB Family Members in Response to Heat Stress.
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Li C., Wu X., Wang P., Wang H., Wang L., Sun F., Lu C., Hao H., Chu C., Jing H.C.
J. Exp. Bot. 2024
Genome-wide association study of image-based trait reveals the genetic architecture of dark-induced leaf senescence in rice.
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Zhang H.C., Gong Y.H., Tao T., Lu S., Zhou W.Y., Xia H., Zhang X.Y., Yang Q.Q., Zhang M.Q., Hong L.M., Guo Q.Q., Ren X.Z., Yang Z.D., Cai X.L., Ren D.Y., Gao J.P., Jin S.K., Leng Y.J.
BMC Genomics 2024 25(1) 797
Genome-wide identification of R2R3-MYB transcription factor subfamily genes involved in salt stress in rice (Oryza sativa L.).
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Ning J., He W., Wu L., Chang L., Hu M., Fu Y., Liu F., Sun H., Gu P., Ndjiondjop M.N., Sun C., Zhu Z.
Plant Biotechnol. J. 2023 21(5) 931-942
The MYB transcription factor Seed Shattering 11 controls seed Shattering by repressing lignin synthesis in African rice.
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Liu J., Nie B., Yu B., Xu F., Zhang Q., Wang Y., Xu W.
Plant Biotechnol. J. 2023 21(8) 1590-1610
Rice ubiquitin-conjugating enzyme OsUbc13 negatively regulates immunity against pathogens by enhancing the activity of OsSnRK1a.
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Li H., Xu L., Wu W., Peng W., Lou Y., Lu J.
Biology (Basel) 2023 12(6)
Infestation by the Piercing-Sucking Herbivore <i>Nilaparvata lugens</i> Systemically Triggers JA- and SA-Dependent Defense Responses in Rice.
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Ma Q., Wang F., Song W., Huang C., Xie K., Wei Z., Li Y., Chen J., Zhang H., Sun Z.
Front Microbiol 2023 14 1131212
Transcriptome analysis of auxin transcription factor OsARF17-mediated rice stripe mosaic virus response in rice.
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Gao Y., Xiang X., Zhang Y., Cao Y., Wang B., Zhang Y., Wang C., Jiang M., Duan W., Chen D., Zhan X., Cheng S., Liu Q., Cao L.
Int J Mol Sci 2022 23(2)
Disruption of <i>OsPHD1</i>, Encoding a UDP-glucose epimerase, Causes JA Accumulation and Enhanced Bacterial Blight Resistance in Rice.
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Gao C., Lu S., Zhou R., Wang Z., Li Y., Fang H., Wang B., Chen M., Cao Y.
Int J Mol Sci 2022 23(20)
The OsCBL8-OsCIPK17 Module Regulates Seedling Growth and Confers Resistance to Heat and Drought in Rice.
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Kang L., Teng Y., Cen Q., Fang Y., Tian Q., Zhang X., Wang H., Zhang X., Xue D.
Plants (Basel) 2022 11(15)
Genome-Wide Identification of R2R3-MYB Transcription Factor and Expression Analysis under Abiotic Stress in Rice.
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Swetha C., Narjala A., Pandit A., Tirumalai V., Shivaprasad P.V.
BMC Genomics 2022 23(1) 53
Degradome comparison between wild and cultivated rice identifies differential targeting by miRNAs.
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Yao Y., Zhou J., Cheng C., Niu F., Zhang A., Sun B., Tu R., Wan J., Li Y., Huang Y., Xie K., Dai Y., Zhang H., Hong J.H., Pan X., Zhu J., Zhou H., Liu Z., Cao L., Chu H.
Plant Cell Environ. 2022 45(2) 542-555
A conserved clathrin-coated vesicle component, OsSCYL2, regulates plant innate immunity in rice.
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Chen J.F., Zhao Z.X., Li Y., Li T.T., Zhu Y., Yang X.M., Zhou S.X., Wang H., Zhao J.Q., Pu M., Feng H., Fan J., Zhang J.W., Huang Y.Y., Wang W.M.
Rice (N Y) 2021 14(1) 26
Fine-Tuning Roles of Osa-miR159a in Rice Immunity Against Magnaporthe oryzae and Development.
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Wang L., Cao S., Wang P., Lu K., Song Q., Zhao F.J., Chen Z.J.
Proc. Natl. Acad. Sci. U.S.A. 2021 118(13)
DNA hypomethylation in tetraploid rice potentiates stress-responsive gene expression for salt tolerance.
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Kong Y., Wang G., Chen X., Li L., Zhang X., Chen S., He Y., Hong G.
Plant Cell Environ. 2021
OsPHR2 modulates phosphate starvation-induced OsMYC2 signalling and resistance to Xanthomonas oryzae pv. oryzae.
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Yang W., Zhao J., Zhang S., Chen L., Yang T., Dong J., Fu H., Ma Y., Zhou L., Wang J., Liu W., Liu Q., Liu B.
Rice (N Y) 2021 14(1) 58
Genome-Wide Association Mapping and Gene Expression Analysis Reveal the Negative Role of OsMYB21 in Regulating Bacterial Blight Resistance in Rice.
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Wei S., Wang Y., Zhou J., Xiang S., Sun W., Peng X., Li J., Hai Y., Wang Y., Li S.
Int J Mol Sci 2020 21(9)
The Conserved Effector UvHrip1 interacts with OsHGW, and Infection of <i>Ustilaginoidea virens</i> Regulates Defense- and heading date-Related Signaling Pathway.
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Wu T., Peng C., Li B., Wu W., Kong L., Li F., Chu Z., Liu F., Ding X.
Rice (N Y) 2019 12(1) 90
OsPGIP1-Mediated Resistance to Bacterial Leaf Streak in Rice is Beyond Responsive to the Polygalacturonase of Xanthomonas oryzae pv. oryzicola.
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Na-Hyun Shin, Do Thi Trang, Woo-Jong Hong, Kang K., Chuluuntsetseg J., Joon-Kwan Moon, Yo-Han Yoo, Ki-Hong Jung, Soo-Cheul Yoo
Int J Mol Sci 2019 21(1)
Rice Senescence-Induced Receptor-Like Kinase (<i>OsSRLK</i>) Is Involved in Phytohormone-Mediated Chlorophyll Degradation.
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Atul Prakash Sathe, Su X., Chen Z., Chen T., Wei X., Tang S., Xiao-Bo Zhang, Jian-Li Wu
Rice (N Y) 2019 12(1) 68
Identification and characterization of a spotted-leaf mutant spl40 with enhanced bacterial blight resistance in rice.
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Filipe O., De Vleesschauwer D., Haeck A., Demeestere K., Höfte M.
Sci Rep 2018 8(1) 3864
The energy sensor OsSnRK1a confers broad-spectrum disease resistance in rice.
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Chen Z., Chen T., Sathe A.P., He Y., Zhang X.B., Wu J.L.
Int J Mol Sci 2018 19(12)
Identification of a Novel Semi-Dominant Spotted-Leaf Mutant with Enhanced Resistance to <i>Xanthomonas</i><i>oryzae</i> pv. <i>oryzae</i> in Rice.
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Ueda Y., Siddique S., Frei M.
Plant Physiol. 2015
A novel gene OsORAP1 enhances cell death in ozone stress in rice (Oryza sativa L.).
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Li T., Chen X., Zhong X., Zhao Y., Liu X., Zhou S., Cheng S., Zhou D.X.
Plant Cell 2013 25(11) 4725-36
Jumonji C Protein JMJ705-Mediated Removal of Histone H3 Lysine 27 Trimethylation Is Involved in Defense-Related Gene Activation in Rice.
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Sakamoto T., Kitano H., Fujioka S.
Plant Signal Behav 2013 8 e27117
An E3 ubiquitin ligase, ERECT LEAF1, functions in brassinosteroid signaling of rice.
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Li S.a b, Luo G.a, Qiao F.a, Wang F.b, Zhao K.b, Wang C.b
Chinese Journal of Applied and Environmental Biology 2013 19 980-985
Influence of Xanthomonas oryzae pv. oryzae PX099 Inoculation on Antioxidant Enzyme Activity and Defense Gene Expression in CBB23
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Campos-Soriano L., García-Martínez J., Segundo B.S.
Mol. Plant Pathol. 2012 13(6) 579-92
The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
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Yara,A., Yaeno,T., Hasegawa,M., Seto,H., Montillet,J.L., Kusumi,K., Seo,S. and Iba,K.
Plant Cell Physiol. 2007 48(9) 1263-1274
Disease resistance against Magnaporthe grisea is enhanced in transgenic rice with suppression of omega-3 fatty acid desaturases
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Jia L., Michael T Clegg, Jiang T.
Plant Physiol. 2004 134(2) 575-85
Evolutionary dynamics of the DNA-binding domains in putative R2R3-MYB genes identified from rice subspecies indica and japonica genomes.
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Lee,M.W., Qi,M. and Yang,Y.
Mol. Plant Microbe Interact. 2001 14(4) 527-535
A novel jasmonic acid-inducible rice myb gene associates with fungal infection and host cell death.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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leaf senescence( GO:0010150 )
response to absence of light( GO:0009646 )
nucleus( GO:0005634 )
defense response to insect( GO:0002213 )
defense response to virus( GO:0051607 )
lignin biosynthetic process( GO:0009809 )
jasmonic acid mediated signaling pathway( GO:0009867 )
response to starvation( GO:0042594 )
cellular response to phosphate starvation( GO:0016036 )
response to salt stress( GO:0009651 )
response to heat( GO:0009408 )
response to abiotic stimulus( GO:0009628 )
defense response( GO:0006952 )
defense response to bacterium( GO:0042742 )
defense response to fungus( GO:0050832 )
DNA binding( GO:0003677 )
brassinosteroid mediated signaling( GO:0009742 )
response to jasmonic acid stimulus( GO:0009753 )
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Trait Ontology
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jasmonic acid sensitivity( TO:0000172 )
false smut disease resistance( TO:0000129 )
bacterial blight disease resistance( TO:0000175 )
heat tolerance( TO:0000259 )
disease resistance( TO:0000112 )
abiotic stress trait( TO:0000168 )
salt tolerance( TO:0006001 )
phosphorus sensitivity( TO:0000102 )
lignin content( TO:0000731 )
grain shattering( TO:0000473 )
viral disease resistance( TO:0000148 )
brown planthopper resistance( TO:0000424 )
blast disease( TO:0000074 )
light intensity sensitivity( TO:0000460 )
leaf senescence( TO:0000249 )
relative chlorophyll content( TO:0001016 )
leaf yellowing tolerance( TO:0002664 )
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Plant Ontology
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fruit abscission zone( PO:0006503 )
stem( PO:0009047 )
leaf( PO:0025034 )
glume( PO:0009039 )
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Related Strains
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Phenotype images
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Last updated
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Mar 12, 2026
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Update info.