Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol CYP19-4
Gene Symbol Synonym OsCYP19-4, OsCYP-16, OsCYP19-3, OsCYP19-4.1, OsCYP19-4.2, OsCYP19-4.3, OsCYP19-4.4, OsCYP19-4.5, OsCYP19-4.6, OsCYP19-4.7, OsCYP19-4.8
CGSNL Gene Name CYCLOPHILIN 19-4
Gene Name Synonym cyclophilin 19-4, cyclophilin 16
Protein Name CYCLOPHILIN 19-4
Allele
Chromosome No. 6
Explanation OsCYP-16 in Trivedi et al. 2013. OsCYP19-3 in Kumari et al. 2014. LOC_Os06g49470.
Trait Class Biochemical character
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Expression
Sequence/Locus
cDNA Accession No. -
MSU ID LOC_Os06g49470.1
RAP ID Os06g0708400
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
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Map
Locate(cM)
Link map Classical linkage map
References
Li J., Qin R., Xu R., Li H., Yang Y., Li L., Wei P., Yang J.
Planta 2018  247(1)  99-111
Isolation and identification of five cold-inducible promoters from Oryza sativa.
Yoon D.H., Lee S.S., Park H.J., Lyu J.I., Chong W.S., Liu J.R., Kim B.G., Ahn J.C., Cho H.S.
J. Exp. Bot. 2016  67(1)  69-82
Overexpression of OsCYP19-4 increases tolerance to cold stress and enhances grain yield in rice (Oryza sativa).
Lee A., Lee S.S., Jung W.Y., Park H.J., Lim B.R., Kim H.S., Ahn J.C., Cho H.S.
Int J Mol Sci 2016  17(7) 
The OsCYP19-4 Gene Is Expressed as Multiple Alternatively Spliced Transcripts Encoding Isoforms with Distinct Cellular Localizations and PPIase Activities under Cold Stress.
Kumari S., Joshi R., Singh K., Roy S., Tripathi A.K., Singh P., Singla-Pareek SL., Pareek A.
Funct. Integr. Genomics 2014   
Expression of a cyclophilin OsCyp2-P isolated from a salt-tolerant landrace of rice in tobacco alleviates stress via ion homeostasis and limiting ROS accumulation.
Trivedi D.K., Ansari M.W., Tuteja N.
Commun Integr Biol 2013  6(5)  e25260
Multiple abiotic stress responsive rice cyclophilin: (OsCYP-25) mediates a wide range of cellular responses.
Jun Cheul Ahn, Dae-Won Kim, Young Nim You, Min Sook Seok, Jeong Mee Park, Hwang H., Beom-Gi Kim, Luan S., Hong-Seog Park, Hye Sun Cho
BMC Plant Biol. 2010  10  253
Classification of rice (Oryza sativa L. Japonica nipponbare) immunophilins (FKBPs, CYPs) and expression patterns under water stress.
TextPresso Search Search textpresso for CYP19-4 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology protein peptidyl-prolyl isomerization( GO:0000413 )
root development( GO:0048364 )
plasma membrane( GO:0005886 )
protein folding( GO:0006457 )
response to cold( GO:0009409 )
response to water deprivation( GO:0009414 )
chloroplast( GO:0009507 )
peptidyl-prolyl cis-trans isomerase activity( GO:0003755 )
multivesicular body( GO:0005771 )
endoplasmic reticulum( GO:0005783 )
Golgi stack( GO:0005795 )
cytosol( GO:0005829 )
auxin mediated signaling pathway( GO:0009734 )
response to hydrogen peroxide( GO:0042542 )
apoplast( GO:0048046 )
Trait Ontology cold tolerance( TO:0000303 )
drought tolerance( TO:0000276 )
oxidative stress( TO:0002657 )
grain yield( TO:0000396 )
tiller number( TO:0000346 )
tillering ability( TO:0000329 )
panicle number( TO:0000152 )
grain weight( TO:0000590 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Mar 3, 2018


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