Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol LRT2
Gene Symbol Synonym CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti
Gene Name Synonym cyclophilin2, cyclophilin 2, cyclophilin-2, cyclophilin 19-2, LATERAL ROOTLESS 2, lateral-rootless 2, REDUCED GROWTH OF LATERAL ROOTS, reduced growth of lateral roots, lateral root-2, Peptidyl-prolyl cis-trans isomerase
Protein Name CYCLOPHILIN 2
Allele cyp2, cyp2-1, cyp2-2, lrt2, lrt2/oscyp2
Chromosome No. 2
Explanation AAA57046. BAF07631. L29469, L29470. D16134. D29701. EF576508. OsCYP-2 in Trivedi et al. 2013. Peptidylprolyl isomerase (cyclophilin). OsCYP19-1 in Kumari et al. 2014. GO:0072593: reactive oxygen species metabolic process. GO:2000023: regulation of lateral root development. GO:1901002: positive regulation of response to salt stress.
Trait Class Biochemical character
Vegetative organ - Root
Tolerance and resistance - Stress tolerance
cDNA Accession No. AK061894
MSU ID LOC_Os02g02890.1
RAP ID Os02g0121300
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Liu H., Cui P., Zhang B., Zhu J., Liu C., Li Q.
PLoS ONE 2022  17(10)  e0276075
Binding of the transcription factor MYC2-like to the ABRE of the OsCYP2 promoter enhances salt tolerance in Oryza sativa.
Acevedo L.A., Kwon J., Nicholson L.K.
Proc. Natl. Acad. Sci. U.S.A. 2019  116(7)  2589-2594
Quantification of reaction cycle parameters for an essential molecular switch in an auxin-responsive transcription circuit in rice.
Cui P., Liu H., Ruan S., Ali B., Gill R.A., Ma H., Zheng Z., Zhou W.
J Integr Plant Biol 2017   
A zinc finger protein, interacted with cyclophilin, affects root development via IAA pathway in rice.
Cui P., Liu H., Islam F., Li L., Farooq M.A., Ruan S., Zhou W.
Front Plant Sci 2016  7  1357
OsPEX11, a Peroxisomal Biogenesis Factor 11, Contributes to Salt Stress Tolerance in Oryza sativa.
Wang Z., Wang Y., Yang J., Hu K., An B., Deng X., Li Y.
Appl. Biochem. Biotechnol. 2016   
Reliable Selection and Holistic Stability Evaluation of Reference Genes for Rice Under 22 Different Experimental Conditions.
Jing H., Yang X., Zhang J., Liu X., Zheng H., Dong G., Nian J., Feng J., Xia B., Qian Q., Li J., Zuo J.
Nat Commun 2015  6  7395
Peptidyl-prolyl isomerization targets rice Aux/IAAs for proteasomal degradation during auxin signalling.
Kumari S., Joshi R., Singh K., Roy S., Tripathi A.K., Singh P., Singla-Pareek SL., Pareek A.
Funct. Integr. Genomics 2014   
Expression of a cyclophilin OsCyp2-P isolated from a salt-tolerant landrace of rice in tobacco alleviates stress via ion homeostasis and limiting ROS accumulation.
Zheng H., Li S., Ren B., Zhang J., Ichii M., Taketa S., Tao Y., Zuo J., Wang H.
Mol Plant 2013  6(5)  1719-21
LATERAL ROOTLESS2, a Cyclophilin Protein, Regulates Lateral Root Initiation and Auxin Signaling Pathway in Rice.
Kang B., Zhang Z., Wang L., Zheng L., Mao W., Li M., Wu Y., Wu P., Mo X.
Plant J. 2013  74(1)  86-97
OsCYP2, a chaperone involved in degradation of auxin-responsive proteins, plays crucial roles in rice lateral root initiation.
Trivedi D.K., Ansari M.W., Tuteja N.
Commun Integr Biol 2013  6(5)  e25260
Multiple abiotic stress responsive rice cyclophilin: (OsCYP-25) mediates a wide range of cellular responses.
Ruan S.L., Ma H.S., Wang S.H., Fu Y.P., Xin Y., Liu W.Z., Wang F., Tong J.X., Wang S.Z., Chen H.Z.
BMC Plant Biology 2011  11  -
Proteomic identification of OsCYP2, a rice cyclophilin that confers salt tolerance in rice (Oryza sativa L.) seedlings when overexpressed
Jun Cheul Ahn, Dae-Won Kim, Young Nim You, Min Sook Seok, Jeong Mee Park, Hwang H., Beom-Gi Kim, Luan S., Hong-Seog Park, Hye Sun Cho
BMC Plant Biol. 2010  10  253
Classification of rice (Oryza sativa L. Japonica nipponbare) immunophilins (FKBPs, CYPs) and expression patterns under water stress.
Wang H., Taketa S., Miyao A., Hirochika H., Ichii M.
Plant Science 2006  170  70-77
Isolation of a novel lateral-rootless mutant in rice (Oryza sativa L.) with reduced sensitivity to auxin
Hao, Z.B. and M. Ichii
Proceed. 8th SABRAO Congress and Annual Meeting of Korean Breed. Soc. 1997    299-300.
The auxin-resistant mutant of rice with altered lateral root initiation.In Harmonizing agricultural productivity and conservation of biodiversity Breeding and ecology.In Harmonizing agricultural productivity and conservation of biodiversity Breeding and ecology.
Hihara,Y., Shoda,K., Liu,Q., Hara,C., Umeda,M., Toriyama,K. and Uchiyama,H.
Plant Biotechnol. 1997  14(1)  71-75
Expressed sequence tags in developing anthers of rice (Oryza sativa L.)
Causse, M.A., T.M. Fulton, Y.G. Cho, S.N. Ahn, J. Chunwongse, K. Wu, J. Xiao, Z. Yu, P.C. Ronald, S.E. Harrington, G. Second, S.R. McCouch and S.D. Tanksley
Genetics 1994  138  1251-1274.
Saturated molecular map of the rice genome based on an interspecific backcross population.
Sasaki,T., Song,J., Koga-Ban,Y., Matsui,E., Fang,F., Higo,H., Nagasaki,H., Hori,M., Miya,M. and Murayama-Kayano,E.
Plant J. 1994  6(4)  615-624
Toward cataloguing all rice genes: large-scale sequencing of randomly chosen rice cDNAs from a callus cDNA library.
Buchholz,W.G., Harris-Haller,L., DeRose,R.T. and Hall,T.C.
Plant Mol. Biol. 1994  25(5)  837-843
Cyclophilins are encoded by a small gene family in rice.
Tanksley, S.D., T.M. Fulton and S.R. McCouch
Genetic Maps, Locus Maps of Complex Genomes, Plants. S.J. O'Brien ed. Cold Spring Harbour Lab. Press. 1993  Book 6  61-79.
Linkage map of rice (Oryza sativa) (2N=24).
TextPresso Search Search textpresso for LRT2 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0060181,GR:0060514
Gene Ontology protein folding( GO:0006457 )
cyclophilin( GO:0004600 )
apoplast( GO:0048046 )
auxin mediated signaling pathway( GO:0009734 )
multicellular organismal development( GO:0007275 )
response to gravity( GO:0009629 )
peptidyl-prolyl cis-trans isomerase activity( GO:0003755 )
cyclosporin A binding( GO:0016018 )
plasma membrane( GO:0005886 )
chloroplast( GO:0009507 )
response to cadmium ion( GO:0046686 )
response to water deprivation( GO:0009414 )
response to salt stress( GO:0009651 )
chlorophyll metabolic process( GO:0015994 )
hydrogen peroxide metabolic process( GO:0042743 )
lateral root development( GO:0048527 )
protein peptidyl-prolyl isomerization( GO:0000413 )
response to heat( GO:0009408 )
response to auxin stimulus( GO:0009733 )
ion homeostasis( GO:0050801 )
Trait Ontology salt tolerance( TO:0006001 )
root development trait( TO:0000656 )
auxin sensitivity( TO:0000163 )
drought tolerance( TO:0000276 )
heat tolerance( TO:0000259 )
chlorophyll content( TO:0000495 )
gravity response trait( TO:0002693 )
root length( TO:0000227 )
lateral root number( TO:0001013 )
Plant Ontology root( PO:0009005 )
root development stage( PO:0007520 )
Related Strains
Phenotype images
Last updated
Feb 8, 2023