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Basic Information
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CGSNL Gene Symbol
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CYP20-2
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Gene Symbol Synonym
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OsCYP20-2, OsCYP-11, OsNuCYP20-2
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CGSNL Gene Name
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CYCLOPHILIN 20-2
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Gene Name Synonym
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cyclophilin 20-2, rice thylakoid lumenal cyclophilin OsCYP20-2, cyclophilin 11
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Protein Name
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CYCLOPHILIN 20-2
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Allele
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oscyp20-2, oscyp20-2t1
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Chromosome No.
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5
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Explanation
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OsCYP-11 in Trivedi et al. 2013. D16053. GO:2000377: regulation of reactive oxygen species metabolic process. TO:0000847: panicle inflorescence morphology trait.
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Trait Class
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Biochemical character
Reproductive organ - panicle
Seed - Morphological traits - Grain shape
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK119201
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MSU ID
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LOC_Os05g01270.1
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RAP ID
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Os05g0103200
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Ge Q., Tang Y., Luo W., Zhang J., Chong K., Xu Y.
Rice (N Y) 2020 13(1) 64
A Cyclophilin OsCYP20-2 Interacts with OsSYF2 to Regulate Grain Length by Pre-mRNA Splicing.
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Ge Q., Zhang Y., Xu Y., Bai M., Luo W., Wang B., Niu Y., Zhao Y., Li S., Weng Y., Wang Z., Qian Q., Chong K.
New Phytol. 2020 225(6) 2453-2467
cyclophilin OsCYP20-2 with a novel variant integrates defense and cell elongation for chilling response in rice.
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Kumari S., Joshi R., Singh K., Roy S., Tripathi A.K., Singh P., Singla-Pareek SL., Pareek A.
Funct. Integr. Genomics 2014
Expression of a cyclophilin OsCyp2-P isolated from a salt-tolerant landrace of rice in tobacco alleviates stress via ion homeostasis and limiting ROS accumulation.
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Trivedi D.K., Ansari M.W., Tuteja N.
Commun Integr Biol 2013 6(5) e25260
Multiple abiotic stress responsive rice cyclophilin: (OsCYP-25) mediates a wide range of cellular responses.
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Kim S.K., You Y.N., Park J.C., Joung Y., Kim B.G., Ahn J.C., Cho H.S.
Plant Cell Rep. 2012 31(2) 417-26
The rice thylakoid lumenal cyclophilin OsCYP20-2 confers enhanced environmental stress tolerance in tobacco and Arabidopsis.
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Jun Cheul Ahn, Dae-Won Kim, Young Nim You, Min Sook Seok, Jeong Mee Park, Hwang H., Beom-Gi Kim, Luan S., Hong-Seog Park, Hye Sun Cho
BMC Plant Biol. 2010 10 253
Classification of rice (Oryza sativa L. Japonica nipponbare) immunophilins (FKBPs, CYPs) and expression patterns under water stress.
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Sasaki,T., Song,J., Koga-Ban,Y., Matsui,E., Fang,F., Higo,H., Nagasaki,H., Hori,M., Miya,M. and Murayama-Kayano,E.
Plant J. 1994 6(4) 615-624
Toward cataloguing all rice genes: large-scale sequencing of randomly chosen rice cDNAs from a callus cDNA library.
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TextPresso Search
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Search textpresso for CYP20-2
( Recent references may be retrievable, but without any warranty )
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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regulation of seed development( GO:0080050 )
chloroplast thylakoid membrane( GO:0009535 )
chloroplast thylakoid lumen( GO:0009543 )
NAD(P)H dehydrogenase complex assembly( GO:0010275 )
spliceosome assembly( GO:0000245 )
regulation of carbohydrate metabolic process( GO:0006109 )
regulation of cell growth( GO:0001558 )
regulation of nuclear mRNA splicing, via spliceosome( GO:0048024 )
protein peptidyl-prolyl isomerization( GO:0000413 )
peptidyl-prolyl cis-trans isomerase activity( GO:0003755 )
protein folding( GO:0006457 )
chloroplast stromal thylakoid( GO:0009533 )
response to cold( GO:0009409 )
unidimensional cell growth( GO:0009826 )
nucleus( GO:0005634 )
chloroplast( GO:0009507 )
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Trait Ontology
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cold tolerance( TO:0000303 )
hydrogen peroxide content( TO:0000605 )
grain length( TO:0000734 )
grain shape( TO:0002730 )
panicle length( TO:0000040 )
grain yield( TO:0000396 )
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Plant Ontology
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-
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Related Strains
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Phenotype images
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Last updated
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Jan 12, 2021
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