Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol ARF16
Gene Symbol Synonym OsARF16
CGSNL Gene Name AUXIN RESPONSE FACTOR 16
Gene Name Synonym auxin response factor-16, auxin response factor 16
Protein Name AUXIN RESPONSE FACTOR 16
Allele osarf16
Chromosome No. 6
Explanation A3B9A0. GO:1990110: callus formation.
Trait Class Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Other
Expression
Sequence/Locus
cDNA Accession No. AK103327
MSU ID LOC_Os06g09660.1
RAP ID Os06g0196700
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Wang S., Han S., Zhou X., Zhao C., Guo L., Zhang J., Liu F., Huo Q., Zhao W., Guo Z., Chen X.
Plant Cell 2023  35(6)  2391-2412
Phosphorylation and ubiquitination of OsWRKY31 are integral to OsMKK10-2-mediated defense responses in rice.
Guo F., Wang H., Lian G., Cai G., Liu W., Zhang H., Li D., Zhou C., Han N., Zhu M., Su Y., Seo P.J., Xu L., Bian H.
Commun Biol 2023  6(1)  457
Initiation of scutellum-derived callus is regulated by an embryo-like developmental pathway in rice.
Han Y., Zhang C., Sha H., Wang X., Yu Y., Liu J., Zhao G., Wang J., Qiu G., Xu X., Fang J.
Rice (N Y) 2023  16(1)  9
Ubiquitin-conjugating enzyme OsUBC11 Affects the Development of Roots via Auxin Pathway.
Wang J., Liu Y., Hu S., Xu J., Nian J., Cao X., Chen M., Cen J., Liu X., Zhang Z., Liu D., Zhu L., Hu J., Ren D., Gao Z., Shen L., Dong G., Zhang Q., Li Q., Yu S., Qian Q., Zhang G.
Int J Mol Sci 2022  23(15) 
<i>LEAF TIP RUMPLED 1</i> Regulates Leaf Morphology and salt tolerance in Rice.
Uzair M., Long H., Zafar S.A., Patil S.B., Chun Y., Li L., Fang J., Zhao J., Peng L., Yuan S., Li X.
Plant Physiol. 2021   
Narrow Leaf21, Encoding Ribosomal Protein RPS3A, Controls Leaf Development in Rice.
Li M., Fu D., Xu T., Wu C.
Int J Mol Sci 2021  22(15) 
<i>VPB1</i> Encoding BELL-like homeodomain Protein Is Involved in Rice Panicle Architecture.
Qin Q., Li G., Jin L., Huang Y., Wang Y., Wei C., Xu Z., Yang Z., Wang H., Li Y.
PLoS Pathog. 2020  16(12)  e1009118
Auxin response factors (ARFs) differentially regulate rice antiviral immune response against rice dwarf virus.
Zhao F.Y.a, Han M.M.a, Zhang S.Y.b, Ren J.a, Hu F.a, Wang X.a
Russian Journal of Plant Physiology 2014  61  608-618
MAPKs as a cross point in H2O2 and auxin signaling under combined cadmium and zinc stress in rice roots
Ni J.a b, Zhu Z.b c, Wang G.c, Shen Y.a, Zhang Y.a, Wu P.b
PLoS ONE 2014  9 
Intragenic suppressor of Osiaa23 revealed a conserved Tryptophan residue crucial for protein-protein interactions
Zheng H., Li S., Ren B., Zhang J., Ichii M., Taketa S., Tao Y., Zuo J., Wang H.
Mol Plant 2013  6(5)  1719-21
LATERAL ROOTLESS2, a Cyclophilin Protein, Regulates Lateral Root Initiation and Auxin Signaling Pathway in Rice.
Shen C., Wang S., Zhang S., Xu Y., Qian Q., Qi Y., Jiang D.A.
Plant Cell Environ. 2013  36(3)  607-20
osarf16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.).
Shen C,Wang S,Bai Y,Wu Y,Zhang S,Chen M,Guilfoyle TJ,Wu P,Qi Y
J. Exp. Bot. 2010  61(14)  3971-81
Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., Tao Y.
Gene 2007  394(1-2)  13-24
Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa).
DB Reference
Gramene ID -
Ontologies
Gene Ontology regulation of defense response to virus( GO:0050688 )
defense response to virus( GO:0051607 )
DNA binding( GO:0003677 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
regulation of transcription, DNA-dependent( GO:0006355 )
phototropism( GO:0009638 )
response to ethylene stimulus( GO:0009723 )
lateral root primordium development( GO:0010386 )
leaf development( GO:0048366 )
auxin mediated signaling pathway( GO:0009734 )
blue light signaling pathway( GO:0009785 )
Trait Ontology viral disease resistance( TO:0000148 )
callus induction( TO:0000428 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Oct 5, 2023

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