Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol ARF16
Gene Symbol Synonym OsARF16, OsARF2, OsARF1
Gene Name Synonym auxin response factor-16, auxin response factor 16, auxin response factor-2, auxin response factor 2, auxin response factor-1, auxin response factor 1
Chromosome No. 1
Explanation AB071300, Q5NB85. OsARF2 in Waller et al. 2002. OsARF1 in Shao et al. 2019, He et al. 2020, Maliket al. 2020, Zhang et al. 2020. GO:1901698: response to nitrogen compound. TO:0020100: nitrate uptake. GO:1902025: nitrate import. TO:0020098: nitrate sensitivity.
Trait Class Tolerance and resistance - Stress tolerance
cDNA Accession No. AK064007
MSU ID LOC_Os01g13520.1
RAP ID Os01g0236300
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Malik N., Ranjan R., Parida S.K., Agarwal P., Tyagi A.K.
Plant J. 2020  101(6)  1411-1429
Mediator subunit OsMED14_1 plays an important role in rice development.
Zhang S., Zhu L., Shen C., Ji Z., Zhang H., Zhang T., Li Y., Yu J., Yang N., He Y., Tian Y., Wu K., Wu J., Harberd N.P., Zhao Y., Fu X., Wang S., Li S.
Plant Cell 2020   
Natural allelic variation in a modulator of auxin homeostasis improves grain yield and nitrogen use efficiency in rice.
He Y., Zhao J., Yang B., Sun S., Peng L., Wang Z.
Plant Biotechnol. J. 2020   
Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigour through mediating crosstalk between auxin and abscisic acid in rice.
Shao Y., Zhou H.Z., Wu Y., Zhang H., Lin J., Jiang X., He Q., Zhu J., Li Y., Yu H., Mao C.
Plant Cell 2019  31(6)  1257-1275
OsSPL3, an SBP-Domain Protein, Regulates crown root Development in Rice.
Shen C,Wang S,Bai Y,Wu Y,Zhang S,Chen M,Guilfoyle TJ,Wu P,Qi Y
J. Exp. Bot. 2010  61(14)  3971-81
Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., Tao Y.
Gene 2007  394(1-2)  13-24
Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa).
Waller,F., Furuya,M. and Nick,P.
Plant Mol. Biol. 2002  50(3)  415-425
OsARF1, an auxin response factor from rice, is auxin-regulated and classifies as a primary auxin responsive gene.
Y Sato, A Nishimura, M Ito, M Ashikari, H Y Hirano, M Matsuoka
Genes Genet. Syst. 2001  76(6)  373-80
Auxin response factor family in rice.
TextPresso Search Search textpresso for ARF16 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology response to ammonium ion( GO:0060359 )
response to nitrate( GO:0010167 )
regulation of transcription, DNA-dependent( GO:0006355 )
transcription( GO:0006350 )
nucleus( GO:0005634 )
DNA binding( GO:0003677 )
auxin mediated signaling pathway( GO:0009734 )
Trait Ontology -
Plant Ontology -
Related Strains
Phenotype images
Last updated
Mar 15, 2023