Update info.Gene - Detail
Detail of Gene
Click here for feedback| Basic Information | |
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| CGSNL Gene Symbol | RST1 |
| Gene Symbol Synonym | OsARF10, ARF10, OsARF18, ARF18, OsRST1, GLR1, OsGLR1 |
| CGSNL Gene Name | RICE SALT TOLERANT 1 |
| Gene Name Synonym | auxin response factor-10, auxin response factor 10, auxin response factor-18, auxin response factor 18, rice salt tolerant 1, glufosinate-resistant rice 1 |
| Protein Name | AUXIN RESPONSE FACTOR 10 |
| Allele | rst1, osarf18, osarf18-1, osarf18-2, glr1, glr1-ko1, glr1-ko2, glr1-ko3, glr1-ko4, glr1-ko5 |
| Chromosome No. | 6 |
| Explanation | AB071299, Q653H7. miR160a-f target gene. OsARF18 in Huang et al. 2016, Zhou et al. 2022, Zhao et al. 2022, Deng et al. 2022, An et al. 2022. TO:0006064: rolled leaf. GO:0052575: carbohydrate localization. TO:1000022: anther morphology trait. GO:0097164: ammonium ion metabolic process. TO:0000975: grain width. TO:0000949: seedling growth and development trait. GO:2000377: regulation of reactive oxygen species metabolic process. |
| Trait Class |
Vegetative organ - Leaf
Character as QTL - Yield and productivity Tolerance and resistance - Stress tolerance Other Reproductive organ - Spikelet, flower, glume, awn Seed - Morphological traits - Grain shape Seed - Morphological traits - Endosperm Vegetative organ - Culm |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. |
AK100322
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| MSU ID |
LOC_Os06g47150.1
LOC_Os06g47150.2 LOC_Os06g47150.3 LOC_Os06g47150.4 |
| RAP ID |
Os06g0685700 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
|
INSD Accession List (Test version) |
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| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
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Ren Y., Liu B., Jiang H., Cheng W., Tao L., Wu K., Wang H., Shen G., Fang Y., Zhang C., Wu Y., Fu X., Ye Y.
Plant Biotechnol. J. 2023 Precision editing of GLR1 confers glufosinate resistance without yield penalty in rice.
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Zhou S., Huang K., Zhou Y., Hu Y., Xiao Y., Chen T., Yin M., Liu Y., Xu M., Jiang X.
BMC Plant Biol. 2022 22(1) 269 Degradome sequencing reveals an integrative miRNA-mediated gene interaction network regulating rice seed vigor.
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Zhao Z., Wang C., Yu X., Tian Y., Wang W., Zhang Y., Bai W., Yang N., Zhang T., Zheng H., Wang Q., Lu J., Lei D., He X., Chen K., Gao J., Liu X., Liu S., Jiang L., Wang H., Wan J.
Proc. Natl. Acad. Sci. U.S.A. 2022 119(36) e2121671119 Auxin regulates source-sink carbohydrate partitioning and reproductive organ development in rice.
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Deng P., Jing W., Cao C., Sun M., Chi W., Zhao S., Dai J., Shi X., Wu Q., Zhang B., Jin Z., Guo C., Tian Q., Shen L., Yu J., Jiang L., Wang C., Chin J.H., Yuan J., Zhang Q., Zhang W.
Proc. Natl. Acad. Sci. U.S.A. 2022 119(50) e2210338119 Transcriptional repressor RST1 controls salt tolerance and grain yield in rice by regulating gene expression of asparagine synthetase.
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An J., Liu Y., Han J., He C., Chen M., Zhu X., Hu W., Song W., Hu J., Guan Y.
Journal of Advanced Research 2022 42 163-176 Transcriptional multiomics reveals the mechanism of seed deterioration in Nicotiana tabacum L. and Oryza sativa L.
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Xu P., Ali A., Han B., Wu X.
Front Plant Sci 2018 9 1528 Current Advances in Molecular Basis and Mechanisms Regulating Leaf Morphology in Rice.
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Huang J., Li Z., Zhao D.
Sci Rep 2016 6 29938 Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
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Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., Tao Y.
Gene 2007 394(1-2) 13-24 Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa).
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Y Sato, A Nishimura, M Ito, M Ashikari, H Y Hirano, M Matsuoka
Genes Genet. Syst. 2001 76(6) 373-80 Auxin response factor family in rice.
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| TextPresso Search | Search textpresso for RST1 ( Recent references may be retrievable, but without any warranty ) |
| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
response to herbicide( GO:0009635 )
nitrogen utilization( GO:0019740 ) potassium ion homeostasis( GO:0055075 ) sodium ion homeostasis( GO:0055078 ) phloem transport( GO:0010233 ) asparagine biosynthetic process( GO:0006529 ) negative regulation of nitrogen compound metabolic process( GO:0051172 ) response to salt stress( GO:0009651 ) response to auxin stimulus( GO:0009733 ) anther dehiscence( GO:0009901 ) anther development( GO:0048653 ) negative regulation of transcription, DNA-dependent( GO:0045892 ) reproductive structure development( GO:0048608 ) DNA binding( GO:0003677 ) nucleus( GO:0005634 ) transcription( GO:0006350 ) regulation of transcription, DNA-dependent( GO:0006355 ) auxin mediated signaling pathway( GO:0009734 ) flower development( GO:0009908 ) epidermal cell division( GO:0010481 ) seed development( GO:0048316 ) |
| Trait Ontology |
plant height( TO:0000207 )
seed size( TO:0000391 ) leaf development trait( TO:0000655 ) tiller number( TO:0000346 ) leaf length( TO:0000135 ) auxin sensitivity( TO:0000163 ) glume opening( TO:0000474 ) sucrose content( TO:0000328 ) seed width( TO:0000149 ) seed weight( TO:0000181 ) starch grain size( TO:0002655 ) starch content( TO:0000696 ) spikelet fertility( TO:0000180 ) lemma and palea anatomy and morphology trait( TO:0000079 ) flower development trait( TO:0000622 ) seed development trait( TO:0000653 ) salt tolerance( TO:0006001 ) grain yield( TO:0000396 ) amino acid content( TO:0002673 ) sodium concentration( TO:0000526 ) potassium concentration( TO:0000513 ) sodium to potassium content ratio( TO:0000525 ) nitrogen recycling( TO:0000506 ) 1000-seed weight( TO:0000382 ) grain length( TO:0000734 ) seed set percent( TO:0000455 ) seed length( TO:0000146 ) seed thickness( TO:0000304 ) germination rate( TO:0000430 ) seed viability( TO:0000345 ) herbicide sensitivity( TO:0000058 ) relative chlorophyll content( TO:0001016 ) relative plant height( TO:0001034 ) relative root length( TO:0000516 ) relative root dry weight( TO:0000644 ) relative shoot dry weight( TO:0000636 ) hydrogen peroxide content( TO:0000605 ) filled grain number( TO:0000447 ) |
| Plant Ontology |
flower development stage( PO:0007615 )
seed development stage( PO:0001170 ) reproductive shoot system development stage( PO:0025530 ) stem( PO:0009047 ) plant ovary( PO:0009072 ) anther( PO:0009066 ) anther development stage( PO:0001004 ) G anther dehiscence stage( PO:0001035 ) leaf( PO:0025034 ) |
| Related Strains | |
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| Phenotype images | |
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| Last updated | |
| Jan 16, 2024 | |
