Gene - List

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Search Condition : Filter((traitClassFacetEn:021_Coloration OR traitClassFacetEn:022_Coloration - Anthocyanin OR traitClassFacetEn:023_Coloration - Chlorophyll OR traitClassFacetEn:024_Coloration - Others))
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CGSNL
Gene
Symbol 		Gene symbol synonym(s) CGSNL Gene Name Gene name synonym(s) Chr. No. Trait Class Gene Ontology Trait Ontology Plant Ontology RAP ID MSU ID Mutant
Image
NYC1 nyc1
OsNYC1
 NON-YELLOW COLORING 1 Chlorophyl b degrading enzyme
Chlase
Non-Yellow Coloring 1
non-yellow coloring1
Probable chlorophyll(ide) b reductase NYC1
chloroplastic
Protein NON-YELLOW COLORING 1
short-chain dehydrogenase/reductase NYC1
 1 Coloration - Chlorophyll
Vegetative organ - Leaf
Biochemical character
 GO:0005488 - binding
GO:0009535 - chloroplast thylakoid membrane
GO:0010304 - PSII associated light-harvesting complex II catabolic process
GO:0010150 - leaf senescence
GO:0016021 - integral to membrane
GO:0034256 - chlorophyll(ide) b reductase activity
GO:0055114 - oxidation reduction
GO:0015996 - chlorophyll catabolic process
GO:0009536 - plastid
GO:0016491 - oxidoreductase activity
GO:0042170 - plastid membrane
 TO:0002712 - stay green trait
TO:0000249 - leaf senescence
TO:0000599 - enzyme activity
TO:0000495 - chlorophyll content
 PO:0009037 - lemma
PO:0001054 - 4 leaf senescence stage
PO:0020104 - leaf sheath
PO:0020122 - inflorescence axis
PO:0009025 - vascular leaf
PO:0009038 - palea
Os01g0227100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g12710.2
LOC_Os01g12710.1
YGL1 OsYGL1
CHLG
Ygl1
CS
OsCHLG
 YELLOW-GREEN LEAF 1 chlorina
Chl synthetase
Chlorophyll synthase
yellow green leaf 1
 5 Tolerance and resistance - Disease resistance
Coloration - Chlorophyll
Tolerance and resistance - Stress tolerance
Vegetative organ - Leaf
 GO:0051707 - response to other organism
GO:0006098 - pentose-phosphate shunt
GO:0006364 - rRNA processing
GO:0009073 - aromatic amino acid family biosynthetic process
GO:0009965 - leaf morphogenesis
GO:0010027 - thylakoid membrane organization
GO:0009534 - chloroplast thylakoid
GO:0015994 - chlorophyll metabolic process
GO:0042793 - transcription from plastid promoter
GO:0045893 - positive regulation of transcription, DNA-dependent
GO:0016021 - integral to membrane
GO:0016117 - carotenoid biosynthetic process
GO:0019344 - cysteine biosynthetic process
GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway
GO:0030154 - cell differentiation
GO:0046408 - chlorophyll synthetase activity
GO:0051607 - defense response to virus
GO:0046686 - response to cadmium ion
GO:0009902 - chloroplast relocation
GO:0015995 - chlorophyll biosynthetic process
GO:0031969 - chloroplast membrane
GO:0009416 - response to light stimulus
 TO:0000075 - light sensitivity
TO:0000148 - viral disease resistance
TO:0000020 - black streak dwarf virus resistance
 Os05g0349700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g28200.2
LOC_Os05g28200.1
PSY1 OsPSY1
 PHYTOENE SYNTHASE 1 phytoene synthase 1
PSY1-like gene
 6 Coloration
Biochemical character
Tolerance and resistance - Stress tolerance
Coloration - Others
 GO:0004311 - farnesyltranstransferase activity
GO:0046905 - phytoene synthase activity
GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups
GO:0009416 - response to light stimulus
GO:0009507 - chloroplast
GO:0009536 - plastid
GO:0016117 - carotenoid biosynthetic process
GO:0016767 - geranylgeranyl-diphosphate geranylgeranyltransferase activity
 TO:0000075 - light sensitivity
 Os06g0729000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g51290.1
LOC_Os06g51290.2
LOC_Os06g51290.4
LOC_Os06g51290.3
PSY2 OsPSY2
 PHYTOENE SYNTHASE 2 phytoene synthase 2
 12 Coloration - Others
Biochemical character
Tolerance and resistance - Stress tolerance
 GO:0016117 - carotenoid biosynthetic process
GO:0004311 - farnesyltranstransferase activity
GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups
GO:0010287 - plastoglobule
GO:0005829 - cytosol
GO:0009408 - response to heat
GO:0046905 - phytoene synthase activity
GO:0009416 - response to light stimulus
GO:0009058 - biosynthetic process
GO:0009507 - chloroplast
 TO:0000075 - light sensitivity
TO:0000432 - temperature response trait
 Os12g0626400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os12g43130.1
RL9 rl9
SLL1/RL9
SLL1
OsSLL1
OsADD1
ADD1
AH2
OsAH2
CL1
OsCL1
OsKAN1
KAN1
 ROLLED LEAF 9 SHALLOT-LIKE1
SHALLOT-LIKE 1
ROLLED LEAF9
anther dehiscence defected 1
abnormal hull 2
curling leaf 1
KANADI1
OsKANADI1
 9 Coloration - Chlorophyll
Other
Character as QTL - Plant growth activity
Vegetative organ - Leaf
Seed - Morphological traits - Grain shape
Reproductive organ - Inflorescence
Vegetative organ - Root
Reproductive organ - Spikelet, flower, glume, awn
Character as QTL - Grain quality
Character as QTL - Yield and productivity
Reproductive organ - panicle
Seed - Morphological traits
Vegetative organ - Culm
 GO:0009685 - gibberellin metabolic process
GO:0045487 - gibberellin catabolic process
GO:0006351 - transcription, DNA-dependent
GO:0009739 - response to gibberellin stimulus
GO:0009957 - epidermal cell fate specification
GO:0051510 - regulation of unidimensional cell growth
GO:0080006 - internode patterning
GO:0048364 - root development
GO:0003677 - DNA binding
GO:0003682 - chromatin binding
GO:0005634 - nucleus
GO:0045892 - negative regulation of transcription, DNA-dependent
GO:0006355 - regulation of transcription, DNA-dependent
GO:0048366 - leaf development
GO:0009555 - pollen development
GO:0010229 - inflorescence development
GO:0012501 - programmed cell death
GO:0042127 - regulation of cell proliferation
GO:0030154 - cell differentiation
GO:0048653 - anther development
GO:0048437 - floral organ development
GO:0001558 - regulation of cell growth
GO:0010088 - phloem development
GO:0010158 - abaxial cell fate specification
GO:0048316 - seed development
 TO:0000085 - leaf rolling
TO:0000397 - grain size
TO:0006022 - floral organ development trait
TO:0000587 - endosperm quality
TO:0000474 - glume opening
TO:0000079 - lemma and palea anatomy and morphology trait
TO:0000207 - plant height
TO:0000421 - pollen fertility
TO:0001006 - adventitious root number
TO:0000165 - panicle exsertion
TO:0000495 - chlorophyll content
TO:0000227 - root length
TO:0002681 - leaf curling
TO:0001012 - lateral root length
TO:0000019 - seedling height
TO:0000657 - spikelet anatomy and morphology trait
TO:0002689 - leaf sheath length
TO:0000072 - awn length
TO:0000166 - gibberellic acid sensitivity
TO:0002675 - gibberellic acid content
TO:0000145 - internode length
TO:0000449 - grain yield per plant
TO:0000653 - seed development trait
TO:0000211 - gel consistency
TO:0000598 - protein content
TO:0000196 - amylose content
TO:0000455 - seed set percent
TO:0000734 - grain length
TO:0000040 - panicle length
TO:0000152 - panicle number
TO:0000382 - 1000-seed weight
TO:0000326 - leaf color
TO:0001027 - net photosynthetic rate
TO:0000135 - leaf length
TO:0000295 - chlorophyll-b content
TO:0002757 - flag leaf length
TO:0000370 - leaf width
TO:0000316 - photosynthetic ability
TO:0000462 - gelatinization temperature
TO:0000656 - root development trait
TO:0000396 - grain yield
TO:0000162 - seed quality
TO:0000053 - pollen sterility
TO:0000391 - seed size
TO:0000655 - leaf development trait
 PO:0001170 - seed development stage
PO:0025034 - leaf
PO:0009051 - spikelet
PO:0009047 - stem
PO:0020104 - leaf sheath
PO:0025426 - phloem development stage
PO:0000017 - vascular leaf primordium
PO:0020148 - shoot apical meristem
PO:0009049 - inflorescence
PO:0001007 - pollen development stage
PO:0009005 - root
PO:0020141 - stem node
PO:0001004 - anther development stage
PO:0025585 - floral organ formation stage
PO:0007520 - root development stage
PO:0020142 - stem internode
PO:0000293 - guard cell
PO:0006019 - leaf abaxial epidermis
PO:0001050 - leaf development stage
Os09g0395300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os09g23200.1
AGO2 OsAGO2
 ARGONAUTE 2 sativa Argonaute 2
Protein argonaute 2
ARGONAUTE2
 4 Tolerance and resistance - Stress tolerance
Other
Tolerance and resistance - Disease resistance
Character as QTL - Yield and productivity
Coloration - Chlorophyll
Vegetative organ - Leaf
Seed - Morphological traits - Grain shape
 GO:0009409 - response to cold
GO:0009658 - chloroplast organization
GO:0003676 - nucleic acid binding
GO:0043067 - regulation of programmed cell death
GO:0051607 - defense response to virus
GO:0031047 - gene silencing by RNA
GO:0046466 - membrane lipid catabolic process
GO:0009737 - response to abscisic acid stimulus
GO:0009690 - cytokinin metabolic process
GO:0048316 - seed development
GO:0009651 - response to salt stress
GO:0050687 - negative regulation of defense response to virus
GO:0006306 - DNA methylation
GO:0010150 - leaf senescence
 TO:0000734 - grain length
TO:0000455 - seed set percent
TO:0000615 - abscisic acid sensitivity
TO:0002660 - cytokinin content
TO:0000249 - leaf senescence
TO:0006001 - salt tolerance
TO:0002715 - chloroplast development trait
TO:0000495 - chlorophyll content
TO:0000020 - black streak dwarf virus resistance
TO:0000326 - leaf color
TO:0001015 - photosynthetic rate
TO:0000269 - 100-seed weight
TO:0000605 - hydrogen peroxide content
TO:0000449 - grain yield per plant
TO:0000396 - grain yield
TO:0000316 - photosynthetic ability
TO:0000303 - cold tolerance
 Os04g0615700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g52540.1
ANS ANS
OsANS1
ANS1
LDOX
LDOX1
OsLDOX
OsLDOX1
 ANTHOCYANIDIN SYNTHASE anthocyanidin synthase
leucoanthocyanidin dioxygenase
 1 Coloration - Others
Seed - Morphological traits
Seed
Coloration - Anthocyanin
Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0010023 - proanthocyanidin biosynthetic process
GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0050589 - leucocyanidin oxygenase activity
GO:0048316 - seed development
GO:0009611 - response to wounding
GO:0005506 - iron ion binding
GO:0009416 - response to light stimulus
GO:0009813 - flavonoid biosynthetic process
GO:0009718 - anthocyanin biosynthetic process
GO:0009753 - response to jasmonic acid stimulus
GO:0009409 - response to cold
GO:0009735 - response to cytokinin stimulus
GO:0009408 - response to heat
GO:0007033 - vacuole organization
 TO:0000303 - cold tolerance
TO:0000653 - seed development trait
TO:0000168 - abiotic stress trait
TO:0000707 - pericarp color
TO:0000071 - anthocyanin content
TO:0000290 - flavonoid content
TO:0000075 - light sensitivity
TO:0000259 - heat tolerance
TO:0000167 - cytokinin sensitivity
 PO:0001170 - seed development stage
PO:0009066 - anther
PO:0007010 - whole plant fruit ripening stage
Os01g0372500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g27490.1
F3'H OsF3'H
OsCYP75B3
CYP75B3
OsF3'H10
F3'H10
OsCYP71P3
CYP71P3
 FLAVONOID 3'-HYDROXYLASE sativa flavonoid 3'-hydroxylase
Flavanone 3'-hydroxylase
P-450 75B3
Cytochrome P450 75B3
flavonoid 3'-monooxygenase
flavonoid 3'-hydroxylase 10
 10 Tolerance and resistance - Disease resistance
Tolerance and resistance - Insect resistance
Coloration - Anthocyanin
Biochemical character
Seed
Seed - Morphological traits
Tolerance and resistance - Stress tolerance
 GO:0002213 - defense response to insect
GO:0050832 - defense response to fungus
GO:0004497 - monooxygenase activity
GO:0005506 - iron ion binding
GO:0016021 - integral to membrane
GO:0005634 - nucleus
GO:0016020 - membrane
GO:0009718 - anthocyanin biosynthetic process
GO:0045486 - naringenin 3-dioxygenase activity
GO:0009753 - response to jasmonic acid stimulus
GO:0009408 - response to heat
GO:0048316 - seed development
GO:0020037 - heme binding
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0009813 - flavonoid biosynthetic process
 TO:0000259 - heat tolerance
TO:0000071 - anthocyanin content
TO:0000424 - brown planthopper resistance
TO:0000172 - jasmonic acid sensitivity
TO:0000653 - seed development trait
TO:0000074 - blast disease
 PO:0001170 - seed development stage
Os10g0320100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os10g17260.1
HB4 OSHB4
OsHox32
HOX32
OsHB4
Oshox32
PHB3
OsHDZ13
OsHDZIP13
HDZ13
HDZIP13
 HOMEODOMAIN CONTAINING PROTEIN 4 Homeobox-leucine zipper protein HOX32
Homeodomain transcription factor HOX32
HD-ZIP protein HOX32
rice homeobox gene 32
homeodomain-leucine zipper transcription factor 13
OsHDZIP transcription factor 13
 3 Other
Vegetative organ - Culm
Coloration - Chlorophyll
Vegetative organ - Leaf
Reproductive organ - Spikelet, flower, glume, awn
Tolerance and resistance - Stress tolerance
 GO:0005634 - nucleus
GO:0005886 - plasma membrane
GO:0009416 - response to light stimulus
GO:0048366 - leaf development
GO:0009753 - response to jasmonic acid stimulus
GO:0009737 - response to abscisic acid stimulus
GO:0046686 - response to cadmium ion
GO:0009733 - response to auxin stimulus
GO:0009414 - response to water deprivation
GO:0006350 - transcription
GO:0006355 - regulation of transcription, DNA-dependent
GO:0043565 - sequence-specific DNA binding
GO:0003700 - transcription factor activity
GO:0042546 - cell wall biogenesis
 TO:0000276 - drought tolerance
TO:0000370 - leaf width
TO:0000163 - auxin sensitivity
TO:0000207 - plant height
TO:0000615 - abscisic acid sensitivity
TO:0000655 - leaf development trait
TO:0000051 - stem strength
TO:0001017 - water use efficiency
TO:0000085 - leaf rolling
TO:0000172 - jasmonic acid sensitivity
TO:0001015 - photosynthetic rate
TO:0000206 - leaf angle
TO:0000495 - chlorophyll content
TO:0000075 - light sensitivity
 PO:0009049 - inflorescence
PO:0025034 - leaf
PO:0009005 - root
PO:0009089 - endosperm
PO:0001050 - leaf development stage
Os03g0640800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g43930.2
LOC_Os03g43930.1
HAP2J OsHAP2J
NF-YA
CBF-B
NF-YA5
OsNF-YA5
NFYA5
 HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX NUCLEAR FACTOR-Y subunit A5
NUCLEAR FACTOR-Y subunit NF-YA5
NF-YA transcription factor 5
NF-YA subunit 5
NF-YA family 5
NUCLEAR FACTOR-YA5
 7 Character as QTL - Yield and productivity
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
Other
Coloration - Chlorophyll
Vegetative organ - Leaf
 GO:0009867 - jasmonic acid mediated signaling pathway
GO:0009753 - response to jasmonic acid stimulus
GO:0005634 - nucleus
GO:0010150 - leaf senescence
GO:0045848 - positive regulation of nitrogen utilization
GO:0042594 - response to starvation
GO:0051607 - defense response to virus
GO:0016602 - CCAAT-binding factor complex
GO:0006995 - cellular response to nitrogen starvation
GO:0043565 - sequence-specific DNA binding
GO:0006350 - transcription
GO:0006355 - regulation of transcription, DNA-dependent
 TO:0000011 - nitrogen sensitivity
TO:0002673 - amino acid content
TO:0002759 - grain number
TO:0000153 - relative yield
TO:0000249 - leaf senescence
TO:0000590 - grain weight
TO:0001034 - relative plant height
TO:0000181 - seed weight
TO:0001016 - relative chlorophyll content
TO:0000148 - viral disease resistance
TO:0000172 - jasmonic acid sensitivity
TO:0000495 - chlorophyll content
 PO:0009047 - stem
PO:0009005 - root
Os07g0158500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g06470.2
LOC_Os07g06470.1
LEC1 OsHAP3E
HAP3E
OsLEC1/OsHAP3E
OsLEC1
LEC1
OsNF-YB7
NF-YB7
NFYB7
L1L
OsLEC1B
LEC1B
 LEAFY COTYLEDON 1 HAP3 subunit E
LEC1-type 3 subunit protein-E
leafy cotyledon 1
NUCLEAR FACTOR-Y subunit B7
NUCLEAR FACTOR-Y subunit NF-YB7
LEC1-LIKE
LEAFY COTYLEDON1-LIKE
HAP3 SUBUNIT E
NF-YB subunit 7
NF-YB family 7
LEAFY COTYLEDON1
 2 Coloration - Chlorophyll
Character as QTL - Germination
Reproductive organ - Heading date
Seed - Morphological traits - Embryo
Tolerance and resistance - Stress tolerance
Other
Seed - Physiological traits - Dormancy
Reproductive organ - Pollination, fertilization, fertility - Sterility
 GO:0009790 - embryonic development
GO:0010109 - regulation of photosynthesis
GO:0048700 - acquisition of desiccation tolerance
GO:0010099 - regulation of photomorphogenesis
GO:0010115 - regulation of abscisic acid biosynthetic process
GO:0010187 - negative regulation of seed germination
GO:0009269 - response to desiccation
GO:0010371 - regulation of gibberellin biosynthetic process
GO:0010431 - seed maturation
GO:0048316 - seed development
GO:0015995 - chlorophyll biosynthetic process
GO:0009734 - auxin mediated signaling pathway
GO:0043565 - sequence-specific DNA binding
GO:0009740 - gibberellic acid mediated signaling
GO:0009733 - response to auxin stimulus
GO:0008284 - positive regulation of cell proliferation
GO:0048579 - negative regulation of long-day photoperiodism, flowering
GO:0005634 - nucleus
GO:0006355 - regulation of transcription, DNA-dependent
GO:0006350 - transcription
GO:0009738 - abscisic acid mediated signaling
GO:0015979 - photosynthesis
GO:0009845 - seed germination
 TO:0000430 - germination rate
TO:0000428 - callus induction
TO:0000397 - grain size
TO:0000653 - seed development trait
TO:0000137 - days to heading
TO:0000163 - auxin sensitivity
TO:0000620 - embryo development trait
TO:0000391 - seed size
TO:0002661 - seed maturation
TO:0000276 - drought tolerance
TO:0000485 - sterility related trait
TO:0000064 - embryo related trait
TO:0000495 - chlorophyll content
TO:0000207 - plant height
TO:0000488 - seed composition based quality trait
 PO:0001170 - seed development stage
PO:0007057 - 0 seed germination stage
PO:0007631 - plant embryo stage
PO:0009010 - seed
PO:0020110 - scutellum
PO:0005421 - parenchyma
PO:0009009 - plant embryo
PO:0005052 - plant callus
PO:0007632 - seed maturation stage
Os02g0725700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g49370.1
LOC_Os02g49370.2
NYC3 nyc3
OsNYC3
PPH
 NON-YELLOW COLORING 3 pheophytinase
 6 Tolerance and resistance - Disease resistance
Character as QTL - Yield and productivity
Coloration - Chlorophyll
Vegetative organ - Leaf
Biochemical character
 GO:0016787 - hydrolase activity
GO:0010941 - regulation of cell death
GO:0050832 - defense response to fungus
GO:0015996 - chlorophyll catabolic process
GO:0080124 - pheophytinase activity
GO:0010150 - leaf senescence
GO:0009536 - plastid
GO:0009645 - response to low light intensity stimulus
 TO:0000447 - filled grain number
TO:0000326 - leaf color
TO:0000249 - leaf senescence
TO:0000074 - blast disease
TO:0000590 - grain weight
TO:0000340 - total soluble sugar content
TO:0000291 - carbohydrate content
TO:0000696 - starch content
TO:0000333 - sugar content
TO:0000382 - 1000-seed weight
TO:0000396 - grain yield
TO:0000255 - sheath blight disease resistance
TO:0000207 - plant height
TO:0000605 - hydrogen peroxide content
TO:0000495 - chlorophyll content
TO:0000460 - light intensity sensitivity
 PO:0001054 - 4 leaf senescence stage
Os06g0354700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g24730.3
LOC_Os06g24730.2
LOC_Os06g24730.1
NOL nol
NOL1
OsNOL
OsNOL1
 NYC1-LIKE Non-Yellow Coloring 1 like
NYC1-like
"Chlorophyll(ide) b reductase NOL
chloroplastic"
Protein NON-YELLOW COLORING 1-LIKE
Protein NYC1-LIKE
Short-chain dehydrogenase/reductase NOL
 3 Biochemical character
Coloration - Chlorophyll
Vegetative organ - Leaf
 GO:0005488 - binding
GO:0016491 - oxidoreductase activity
GO:0055114 - oxidation reduction
GO:0015996 - chlorophyll catabolic process
GO:0034256 - chlorophyll(ide) b reductase activity
GO:0009535 - chloroplast thylakoid membrane
GO:0009536 - plastid
GO:0010304 - PSII associated light-harvesting complex II catabolic process
GO:0008152 - metabolic process
 TO:0000326 - leaf color
TO:0000495 - chlorophyll content
 Os03g0654600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g45194.1
BT1-3 OsBT1-3
SLA
 BRITTLE 1-3 Brittle-1-3
seedling leaf albino
 6 Coloration - Chlorophyll
Biochemical character
Vegetative organ - Leaf
 GO:0016021 - integral to membrane
GO:0022857 - transmembrane transporter activity
GO:0005743 - mitochondrial inner membrane
GO:0009507 - chloroplast
GO:0015292 - uniporter activity
GO:0022891 - substrate-specific transmembrane transporter activity
GO:0009941 - chloroplast envelope
GO:0015853 - adenine transport
GO:0009658 - chloroplast organization
GO:0006839 - mitochondrial transport
GO:0005982 - starch metabolic process
 TO:0000326 - leaf color
TO:0002715 - chloroplast development trait
 Os06g0602700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g40050.1
LOC_Os06g40050.2
LPS1 SDH2
SDHB
sdhB
RPS14
rps14
sdh2-1
SDH2-RPS14
OsLPS1
OsSDH2-1
 LATE PREMATURE SENESCENCE 1 SUCCINATE:UBIQUINONE OXIDOREDUCTASE
mitochondrial succinate dehydrogenase subunit B
ribosomal protein S14
succinate dehydrogenase (iron-sulphur protein subunit)
chimeric SDH2-RPS14
 8 Reproductive organ - Pollination, fertilization, fertility
Coloration - Chlorophyll
Coloration - Others
Character as QTL - Yield and productivity
Biochemical character
Reproductive organ - panicle
Vegetative organ - Culm
Vegetative organ - Leaf
Tolerance and resistance - Stress tolerance
 GO:0006099 - tricarboxylic acid cycle
GO:0051537 - 2 iron, 2 sulfur cluster binding
GO:0007005 - mitochondrion organization
GO:0009658 - chloroplast organization
GO:0009055 - electron carrier activity
GO:0000104 - succinate dehydrogenase activity
GO:0016491 - oxidoreductase activity
GO:0010150 - leaf senescence
GO:0005739 - mitochondrion
GO:0010229 - inflorescence development
 TO:0000293 - chlorophyll-a content
TO:0001015 - photosynthetic rate
TO:0000316 - photosynthetic ability
TO:0000040 - panicle length
TO:0000522 - stomatal conductance
TO:0000447 - filled grain number
TO:0002715 - chloroplast development trait
TO:0000639 - seed fertility
TO:0000621 - inflorescence development trait
TO:0000249 - leaf senescence
TO:0000396 - grain yield
TO:0000207 - plant height
TO:0000137 - days to heading
TO:0000605 - hydrogen peroxide content
TO:0000455 - seed set percent
TO:0006032 - panicle size
TO:0000496 - carotenoid content
TO:0000295 - chlorophyll-b content
 PO:0001083 - inflorescence development stage
PO:0000025 - root tip
PO:0025034 - leaf
PO:0001054 - 4 leaf senescence stage
PO:0009066 - anther
PO:0009072 - plant ovary
Os08g0120000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g02640.1
LOC_Os08g02640.2
LOC_Os08g02640.3
LOC_Os08g02640.4
LOC_Os08g02640.5
YL1 MTC
OsMTC
YGL8
OsYGL8
OsCRD1
CRD1
OsCRD
CRD
YL-1
PNZIP
OsPNZIP
 YELLOW-LEAF 1 Mg-Proto IX monomethylester cyclase
yellow-green leaf 8
Copper Response Defect 1
Yellow-Leaf 1
PHARBITIS NIL LEUCINE ZIPPER
 1 Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
GO:0051707 - response to other organism
GO:0050832 - defense response to fungus
GO:0048529 - magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity
GO:0031408 - oxylipin biosynthetic process
GO:0003677 - DNA binding
GO:0009658 - chloroplast organization
GO:0019216 - regulation of lipid metabolic process
GO:0009507 - chloroplast
GO:0005506 - iron ion binding
GO:0015979 - photosynthesis
GO:0009941 - chloroplast envelope
GO:0019344 - cysteine biosynthetic process
GO:0009668 - plastid membrane organization
GO:0009534 - chloroplast thylakoid
GO:0006636 - unsaturated fatty acid biosynthetic process
GO:0010027 - thylakoid membrane organization
GO:0010207 - photosystem II assembly
GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway
GO:0009414 - response to water deprivation
GO:0009416 - response to light stimulus
GO:0006364 - rRNA processing
 TO:0002715 - chloroplast development trait
TO:0000295 - chlorophyll-b content
TO:0000255 - sheath blight disease resistance
TO:0000316 - photosynthetic ability
TO:0000298 - chlorophyll ratio
TO:0000326 - leaf color
TO:0000188 - drought sensitivity
TO:0000293 - chlorophyll-a content
 PO:0009047 - stem
PO:0025034 - leaf
PO:0009049 - inflorescence
Os01g0279100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g17170.1
LOC_Os01g17170.2
AL12 al12
 ALBINO 12 8 Coloration - Chlorophyll
 GO:0015994 - chlorophyll metabolic process
GO:0009658 - chloroplast organization
 TO:0000495 - chlorophyll content
TO:0000299 - leaf lamina color
 -
PPS OsWD40-55
OsCOP1
COP1
YEL
OsYEL
OsPPS
COP1-1
OsCOP1-1
OsRING347
RING347
 PETER PAN SYNDROME COP1 ortholog
CONSTITUTIVE PHOTOMORPHOGENIC 1
yellowish-pericarp embryo lethal
RING-type E3 ubiquitin ligase 347
 2 Seed - Morphological traits - Grain shape
Seed - Physiological traits - Dormancy
Seed - Morphological traits - Embryo
Coloration - Others
Heterochrony
Tolerance and resistance - Stress tolerance
Reproductive organ - Heading date
 GO:0010218 - response to far red light
GO:0046283 - anthocyanin metabolic process
GO:0005634 - nucleus
GO:0010119 - regulation of stomatal movement
GO:0008270 - zinc ion binding
GO:0016874 - ligase activity
GO:0009416 - response to light stimulus
GO:0009628 - response to abiotic stimulus
GO:0010228 - vegetative to reproductive phase transition
GO:0046685 - response to arsenic
GO:0009640 - photomorphogenesis
GO:0009641 - shade avoidance
GO:0048573 - photoperiodism, flowering
GO:0009637 - response to blue light
GO:0010224 - response to UV-B
GO:0006281 - DNA repair
GO:0009793 - embryonic development ending in seed dormancy
GO:0009266 - response to temperature stimulus
GO:0009962 - regulation of flavonoid biosynthetic process
 TO:0000229 - photoperiod sensitivity
TO:0000064 - embryo related trait
TO:0000601 - UV-B light sensitivity
TO:0000326 - leaf color
TO:0000675 - ferulic acid content
TO:0006006 - monosaccharide content
TO:0000397 - grain size
TO:0006007 - polysaccharide content
TO:0000137 - days to heading
TO:0000707 - pericarp color
TO:0000051 - stem strength
TO:0000430 - germination rate
TO:0000159 - blue light sensitivity
TO:0000168 - abiotic stress trait
TO:0000590 - grain weight
TO:0000075 - light sensitivity
TO:0000432 - temperature response trait
TO:0000396 - grain yield
TO:0002616 - flowering time
TO:0000130 - far red light sensitivity
TO:0000290 - flavonoid content
 Os02g0771100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g53140.1
BF Bf
 BROWN FURROWS OF HULL Brown furrows of hull
 Coloration - Others
 GO:0043473 - pigmentation
 TO:0000056 - stem color
TO:0000287 - brown rice shape
TO:0000264 - lemma and palea color
 PO:0009047 - stem
PO:0009088 - seed coat
PO:0009039 - glume
-
BHA Bha(Bh1)
Bha
Bh1
 BLACK HULL A Black hull-a
Black hull-1
 Coloration - Others
 GO:0043473 - pigmentation
 TO:0000190 - seed coat color
TO:0000264 - lemma and palea color
 PO:0009088 - seed coat
PO:0009039 - glume
-
BHB Bhb(Bh2)
Bhb
Bh2
 BLACK HULL B Black hull-b
Black hull-2
 Coloration - Others
 GO:0043473 - pigmentation
 TO:0000190 - seed coat color
TO:0000264 - lemma and palea color
 PO:0009088 - seed coat
PO:0009039 - glume
-
CHS2 chs2(t)*
chs2
 CHLOROSIS CAUSED BY LOW TEMPERATURE 2 chlorosis caused by low temperature2
chlorosis caused by low temperature 2
chlorosis caused by low temperature-2
 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
GO:0009409 - response to cold
GO:0015994 - chlorophyll metabolic process
 TO:0000495 - chlorophyll content
TO:0000299 - leaf lamina color
TO:0000432 - temperature response trait
 PO:0009025 - vascular leaf
-
CHS3 chs3(t)*
chs3
 CHLOROSIS CAUSED BY LOW TEMPERATURE 3 chlorosis caused by low temperature3
chlorosis caused by low temperature 3
chlorosis caused by low temperature-3
 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
GO:0009409 - response to cold
GO:0015994 - chlorophyll metabolic process
 TO:0000495 - chlorophyll content
TO:0000432 - temperature response trait
TO:0000299 - leaf lamina color
 PO:0009025 - vascular leaf
-
CHS4 chs4(t)*
chs4
 CHLOROSIS CAUSED BY LOW TEMPERATURE 4 chlorosis caused by low temperature4
chlorosis caused by low temperature 4
chlorosis caused by low temperature-4
 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
GO:0009409 - response to cold
GO:0015994 - chlorophyll metabolic process
 TO:0000432 - temperature response trait
TO:0000495 - chlorophyll content
TO:0000299 - leaf lamina color
 PO:0009025 - vascular leaf
-
IPL3 IPl3
 INHIBITOR FOR PURPLE LEAF 3 Inhibitor for purple leaf3
Inhibitor for purple leaf 3
Inhibitor for purple leaf-3
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000426 - internode color
TO:0000299 - leaf lamina color
TO:0000367 - basal leaf sheath color
TO:0000364 - leaf collar color
 PO:0020104 - leaf sheath
PO:0006012 - leaf collar
PO:0005005 - shoot internode
-
IPL5 IPl5
 INHIBITOR FOR PURPLE PERICARP 5 Inhibitor for purple pericarp-5
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000487 - endosperm color
TO:0000190 - seed coat color
 PO:0009010 - seed
-
IPL6 IPl6
 INHIBITOR FOR PURPLE LEAF 6 Inhibitor for purple leaf (Pl-i)
Inhibitor for purple leaf (Pl.2(Pl-i))
Inhibitor for purple leaf-6
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000326 - leaf color
TO:0000299 - leaf lamina color
 PO:0009025 - vascular leaf
-
IPS1 IPs1*
IPs1
 INHIBITOR FOR PURPLE STIGMA 1 Inhibitor for purple stigma (Ps1)
Inhibitor for purple stigma-1
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000185 - stigma color
 PO:0009073 - stigma
-
IPS3 IPs3*
IPs2
 INHIBITOR FOR PURPLE STIGMA 3 Inhibitor for purple stigma (Ps3)
Inhibitor for purple stigma-2
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000185 - stigma color
 PO:0009073 - stigma
-
IPSA IPsa(IPs1)
IPsa
IPs1
Ips3
 INHIBITOR FOR PURPLE STIGMA A Inhibitor for purple stigma-a (Psa)
Inhibitor for purple stigma-a
Inhibitor for purple stigma-3
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000185 - stigma color
 PO:0009073 - stigma
-
LGP lgp*
lgp
 LIGHT GREEN PANICLE AND LEAF light green panicle and leaf
 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
 TO:0000495 - chlorophyll content
TO:0000299 - leaf lamina color
TO:0000264 - lemma and palea color
 PO:0009049 - inflorescence
PO:0009025 - vascular leaf
-
PC Pc
 PURPLE COLEOPTILE Purple coleoptile
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000367 - basal leaf sheath color
 PO:0020104 - leaf sheath
-
PJ Pj
 PURPLE JUNCTURA Purple junctura
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000364 - leaf collar color
 PO:0006012 - leaf collar
-
PJB Pjb
 PURPLE JUNCTURA BACK Purple junctura back
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000364 - leaf collar color
 PO:0006012 - leaf collar
-
PLA1 pla1
OsPLA1
plt1
CYP78A11
 PLASTOCHRON 1 plastochron1
plastochron 1
plastochron-1
Cytochrome P450 78A11
Protein PLASTOCHRON1
 10 Coloration - Anthocyanin
Seed - Morphological traits - Grain shape
Heterochrony
Reproductive organ - panicle
Vegetative organ - Leaf
Reproductive organ - Panicle, Mode of branching
Vegetative organ - Culm
 GO:0010228 - vegetative to reproductive phase transition
GO:0010432 - bract development
GO:0051781 - positive regulation of cell division
GO:0055114 - oxidation reduction
GO:0004497 - monooxygenase activity
GO:0007275 - multicellular organismal development
GO:0009055 - electron carrier activity
GO:0010229 - inflorescence development
GO:0020037 - heme binding
GO:0048366 - leaf development
GO:0009740 - gibberellic acid mediated signaling
GO:0009739 - response to gibberellin stimulus
 TO:0000369 - vegetative growth time
TO:0000207 - plant height
TO:0000621 - inflorescence development trait
TO:0000346 - tiller number
TO:0000391 - seed size
TO:0002638 - shoot meristem development
TO:0000659 - phyllochron
TO:0000166 - gibberellic acid sensitivity
TO:0000050 - inflorescence branching
TO:0000730 - mitotic cell cycle trait
 PO:0020122 - inflorescence axis
PO:0001083 - inflorescence development stage
PO:0020148 - shoot apical meristem
Os10g0403000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os10g26340.1
image Id ( 6707 )
PLG Plg
 PURPLE LIGULE Purple ligule
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000197 - ligule color
 PO:0020105 - ligule
-
PLM Plm(Pla)
Pla
Plm
 PURPLE LEAF MARGIN Purple leaf margin
Purple leaf apex
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000299 - leaf lamina color
 PO:0020039 - leaf lamina
-
PM Pm(Sp)
Sp
Pm
 PURPLE SEPTUM Purple septum
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000426 - internode color
TO:0000059 - node color
 PO:0020141 - stem node
PO:0005005 - shoot internode
-
PMR Pmr(Plm)
Plm
Pmr
 PURPLE MIDRIB Purple midrib
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000299 - leaf lamina color
 PO:0020039 - leaf lamina
-
PNR Pnr
 PURPLE NODAL RING Purple nodal ring
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000059 - node color
 PO:0020141 - stem node
-
PS3 Ps3(Ps2)
Ps2
Ps3
 PURPLE STIGMA 3 Purple stigma3
Purple stigma 3
Purple stigma-3
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000185 - stigma color
 PO:0009073 - stigma
-
PSH Psh
 PURPLE LEAF SHEATH Purple leaf sheath
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000367 - basal leaf sheath color
 PO:0020104 - leaf sheath
-
PU Pu
 PURPLE PULVINUS Purple pulvinus
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000059 - node color
 PO:0020141 - stem node
-
PX Px
 PURPLE LEAF AXIL Purple leaf axil
 Coloration - Anthocyanin
 GO:0009812 - flavonoid metabolic process
 TO:0000059 - node color
TO:0000299 - leaf lamina color
 PO:0020039 - leaf lamina
-
V(KL1111) v(KL1111)
 VIRESCENT-KL 1111 virescent-(KL1111)
 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
 TO:0000495 - chlorophyll content
TO:0000299 - leaf lamina color
 - image Id ( 6712 )
V(KL406) v(KL406)
 VIRESCENT-KL 406 virescent-(KL406)
 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
 TO:0000495 - chlorophyll content
TO:0000299 - leaf lamina color
 - image Id ( 6713 )
YL yl*
 CHLOROPHYLL MUTANT chlorophyll mutant (unstable gamete)
 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
 TO:0000299 - leaf lamina color
TO:0000495 - chlorophyll content
 -
YP yp*
gh4
 YELLOW PANICLE yellow panicle
gold hull and internode-4
 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
GO:0009648 - photoperiodism
GO:0003700 - transcription factor activity
 TO:0000137 - days to heading
TO:0000264 - lemma and palea color
TO:0000077 - shoot anatomy and morphology trait
TO:0000495 - chlorophyll content
TO:0000299 - leaf lamina color
 PO:0009025 - vascular leaf
PO:0009049 - inflorescence
-
Z(KL1207) z(KL1207)
 ZEBRA zebra(KL1207)
 Coloration - Chlorophyll
 GO:0015995 - chlorophyll biosynthetic process
 TO:0000069 - variegated leaf
 - image Id ( 6714 )
AL8 al8
alK8
 ALBINO 8 albino8
albino 8
albino-8
 1 Coloration - Chlorophyll
 GO:0009658 - chloroplast organization
GO:0015994 - chlorophyll metabolic process
 TO:0000495 - chlorophyll content
TO:0000299 - leaf lamina color
 PO:0009025 - vascular leaf
-
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/rice/oryzabase