CGSNL
Gene
Symbol
|
Gene symbol synonym(s)
|
CGSNL Gene Name
|
Gene name synonym(s)
|
Chr. No.
|
Trait Class
|
Gene Ontology
|
Trait Ontology
|
Plant Ontology
|
RAP ID
|
MSU ID
|
Mutant
Image
|
|
CENH3
|
OsCENH3
CenH3
|
CENTROMERIC HISTONE 3C
|
centromeric histone H3
centromere-specific histone H3
centromere-specific H3 histone
centromere-specific histone H3
|
5
|
Character as QTL - Plant growth activity
Biochemical character
Reproductive organ - Pollination, fertilization, fertility
Reproductive organ - Heading date
|
GO:0005515 - protein binding
GO:0006334 - nucleosome assembly
GO:0009567 - double fertilization forming a zygote and endosperm
GO:0051983 - regulation of chromosome segregation
GO:0051382 - kinetochore assembly
GO:0030527 - structural constituent of chromatin
GO:0000776 - kinetochore
GO:0048573 - photoperiodism, flowering
GO:0009793 - embryonic development ending in seed dormancy
GO:0009960 - endosperm development
GO:0007276 - gamete generation
GO:0000775 - chromosome, centromeric region
GO:0000786 - nucleosome
GO:0005634 - nucleus
GO:0046982 - protein heterodimerization activity
GO:0003677 - DNA binding
|
TO:0002616 - flowering time
TO:0000207 - plant height
TO:0000421 - pollen fertility
TO:0000137 - days to heading
TO:0000040 - panicle length
TO:0002757 - flag leaf length
TO:0000455 - seed set percent
TO:0000620 - embryo development trait
|
PO:0007631 - plant embryo stage
PO:0007633 - endosperm development stage
|
Os05g0489800
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os05g41080.1
LOC_Os05g41080.2
|
|
|
MEL1
|
mel1
OsMEL1
MEAL1
OsMEAL1
OsAGO5c
|
MEIOSIS ARRESTED AT LEPTOTENE 1
|
MEIOSIS ARRESTED AT LEPTOTENE1
Protein argonaute MEL1
Protein MEIOSIS ARRESTED AT LEPTOTENE 1
|
3
|
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Reproductive organ - Pollination, fertilization, fertility - Meiosis
|
GO:0010152 - pollen maturation
GO:0009555 - pollen development
GO:0048236 - plant-type spore development
GO:0035197 - siRNA binding
GO:0009561 - megagametogenesis
GO:0003676 - nucleic acid binding
GO:0033169 - histone H3-K9 demethylation
GO:0045836 - positive regulation of meiosis
GO:0006396 - RNA processing
GO:0007281 - germ cell development
GO:0005730 - nucleolus
GO:0005731 - nucleolus organizer region
GO:0005737 - cytoplasm
GO:0031047 - gene silencing by RNA
GO:0055046 - microgametogenesis
GO:0005739 - mitochondrion
GO:0007140 - male meiosis
GO:0007143 - female meiosis
|
TO:0000729 - meiotic cell cycle trait
TO:0000358 - female sterility
TO:0000053 - pollen sterility
TO:0000727 - sporogenesis
TO:0000353 - aborted at pollen maturity stage
TO:0000437 - male sterility
TO:0000436 - spikelet sterility
|
PO:0000431 - megasporocyte
PO:0001016 - L mature pollen stage
PO:0000018 - ovule primordium
PO:0006014 - male archesporial cell
PO:0006015 - female archesporial cell
PO:0009066 - anther
PO:0007600 - floral organ differentiation stage
PO:0001007 - pollen development stage
PO:0020047 - microsporocyte
PO:0025277 - pollen sac
PO:0025202 - microsporangium
PO:0009049 - inflorescence
|
Os03g0800200
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os03g58600.1
|
|
|
RBOHB
|
rbohB
OsrbohB
Os rbohB
OsRbohB
OsNox1
Nox1
Os-RbohB
RbohB
OsRboh1
Rboh1
|
RESPIRATORY BURST OXIDASE HOMOLOG B
|
Respiratory Burst Oxidase Homolog B
Respiratory Burst Oxidase Homologue B
NADPH oxidase 1
|
1
|
Vegetative organ - Root
Biochemical character
Character as QTL - Yield and productivity
Character as QTL - Germination
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
Reproductive organ - Pollination, fertilization, fertility
|
GO:0009751 - response to salicylic acid stimulus
GO:0009414 - response to water deprivation
GO:0009738 - abscisic acid mediated signaling
GO:0005509 - calcium ion binding
GO:0009408 - response to heat
GO:0010118 - stomatal movement
GO:0006952 - defense response
GO:0009626 - plant-type hypersensitive response
GO:0030104 - water homeostasis
GO:0002238 - response to molecule of fungal origin
GO:0009734 - auxin mediated signaling pathway
GO:0005886 - plasma membrane
GO:0010266 - response to vitamin B1
GO:0009566 - fertilization
GO:0050665 - hydrogen peroxide biosynthetic process
GO:0050832 - defense response to fungus
GO:0009413 - response to flooding
GO:0010115 - regulation of abscisic acid biosynthetic process
GO:0009687 - abscisic acid metabolic process
GO:0009753 - response to jasmonic acid stimulus
GO:0048364 - root development
GO:0043020 - NADPH oxidase complex
GO:0006979 - response to oxidative stress
GO:0009845 - seed germination
GO:0009737 - response to abscisic acid stimulus
GO:0009733 - response to auxin stimulus
GO:0042742 - defense response to bacterium
GO:0002679 - respiratory burst during defense response
GO:0006970 - response to osmotic stress
GO:0009651 - response to salt stress
GO:0043621 - protein self-association
GO:0016174 - NAD(P)H oxidase activity
GO:0016021 - integral to membrane
GO:0004601 - peroxidase activity
|
TO:0000656 - root development trait
TO:0000163 - auxin sensitivity
TO:0000172 - jasmonic acid sensitivity
TO:0006002 - proline content
TO:0000136 - relative water content
TO:0000382 - 1000-seed weight
TO:0000430 - germination rate
TO:0002667 - abscisic acid content
TO:0000524 - submergence tolerance
TO:0000074 - blast disease
TO:0000615 - abscisic acid sensitivity
TO:0000112 - disease resistance
TO:0000175 - bacterial blight disease resistance
TO:0000276 - drought tolerance
TO:0006001 - salt tolerance
TO:0000095 - osmotic response sensitivity
TO:0000520 - stomatal closure rate
TO:0000605 - hydrogen peroxide content
TO:0002657 - oxidative stress
TO:0000439 - fungal disease resistance
TO:0000129 - false smut disease resistance
|
PO:0025034 - leaf
|
Os01g0360200
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os01g25820.2
LOC_Os01g25820.1
|
|
|
RF1B
|
RF1b
Rf-1B
PPR7
|
RESTORATION OF FERTILITY 1B
|
pentatricopeptide repeat motif containing gene 7
PPR motif-containing gene 7
|
10
|
Reproductive organ - Pollination, fertilization, fertility - Fertility restoration
|
GO:0005739 - mitochondrion
GO:0007275 - multicellular organismal development
|
TO:0000497 - fertility restoration trait
|
|
Os10g0499500
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os10g35640.1
|
|
|
TDR
|
tdr
OsbHLH005
bHLH005
OsbHLH5
bhlh5
TDR1
OsTDR
OsTDR1
OsMYC5
MYC5
|
TAPETUM DEGENERATION RETARDATION
|
tapetum degeneration retardation
basic helix loop helix 5
basic/helix-loop-helix 5
Myelocytomatosis oncogene transcription factor 5
|
2
|
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Reproductive organ - Spikelet, flower, glume, awn
Tolerance and resistance - Stress tolerance
|
GO:0009266 - response to temperature stimulus
GO:0046983 - protein dimerization activity
GO:0009555 - pollen development
GO:0003677 - DNA binding
GO:0005634 - nucleus
GO:0006355 - regulation of transcription, DNA-dependent
GO:0048657 - tapetal cell differentiation
GO:0030528 - transcription regulator activity
GO:0045449 - regulation of transcription
GO:0048653 - anther development
GO:0048658 - tapetal layer development
GO:0010208 - pollen wall assembly
GO:0010584 - pollen exine formation
GO:0003682 - chromatin binding
GO:0000978 - RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0010234 - tapetal cell fate specification
GO:0048654 - anther morphogenesis
|
TO:0000437 - male sterility
TO:0000432 - temperature response trait
TO:0000218 - pollen abortion type
|
PO:0009071 - anther wall tapetum
PO:0001007 - pollen development stage
PO:0009066 - anther
PO:0009049 - inflorescence
PO:0001004 - anther development stage
|
Os02g0120500
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os02g02820.1
|
|
|
UGP1
|
Ugp1
OsUgp1
UGP2
UGP3
|
UDP-GLUCOSE PYROPHOSPHORYLASE 1
|
UDP-Glucose Pyrophosphorylase1
UDP-Glucose Pyrophosphorylase 1
UGPase 1
UGPase
UTP:glucose phosphate uridylyltransferase
|
9
|
Tolerance and resistance - Stress tolerance
Biochemical character
Reproductive organ - Pollination, fertilization, fertility - Male sterility
|
GO:0003983 - UTP:glucose-1-phosphate uridylyltransferase activity
GO:0009555 - pollen development
GO:0009651 - response to salt stress
GO:0070592 - cell wall polysaccharide biosynthetic process
GO:0010238 - response to proline
GO:0052543 - callose deposition in cell wall
GO:0005886 - plasma membrane
GO:0046686 - response to cadmium ion
GO:0048653 - anther development
GO:0016036 - cellular response to phosphate starvation
GO:0042545 - cell wall modification
|
TO:0000437 - male sterility
TO:0000034 - chromium sensitivity
|
PO:0001004 - anther development stage
PO:0001007 - pollen development stage
PO:0025281 - pollen
PO:0009082 - spikelet floret
|
Os09g0553200
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os09g38030.1
LOC_Os09g38030.2
|
|
|
UGP2
|
Ugp2
OsUgp2
|
UDP-GLUCOSE PYROPHOSPHORYLASE 2
|
UDP-Glucose Pyrophosphorylase2
UDP-Glucose Pyrophosphorylase 2
UDPGase 2
|
2
|
Biochemical character
Reproductive organ - Pollination, fertilization, fertility - Male sterility
|
GO:0016779 - nucleotidyltransferase activity
GO:0003983 - UTP:glucose-1-phosphate uridylyltransferase activity
GO:0019252 - starch biosynthetic process
GO:0009555 - pollen development
|
TO:0000696 - starch content
TO:0000421 - pollen fertility
|
PO:0001007 - pollen development stage
PO:0025395 - floral organ
PO:0009066 - anther
PO:0025281 - pollen
|
Os02g0117700
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os02g02560.1
|
|
|
WDA1
|
OsWDA1
Wda1
wda1
OS-CER1
OsGL1-5
OsCER1b
CER1b
|
WAX-DEFICIENT ANTHER 1
|
Wax-deficient anther1
Wax-deficient anther 1
WDA1 protein
Glossy1-homologous gene 5
ECERIFERUM1b
|
10
|
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Tolerance and resistance - Stress tolerance
|
GO:0043668 - exine
GO:0005783 - endoplasmic reticulum
GO:0010143 - cutin biosynthetic process
GO:0010025 - wax biosynthetic process
GO:0048653 - anther development
|
TO:0000187 - anther color
TO:0000709 - leaf gloss
TO:0000531 - anther length
TO:0000276 - drought tolerance
TO:0000214 - anther shape
TO:0000245 - pollen free
TO:0000723 - microsporocyte development trait
|
PO:0000022 - plant cuticle
PO:0009051 - spikelet
PO:0009082 - spikelet floret
PO:0009066 - anther
PO:0000002 - anther wall
PO:0000282 - trichome
PO:0009073 - stigma
PO:0009071 - anther wall tapetum
PO:0020091 - obsolete microgametophyte
PO:0009036 - lodicule
PO:0000032 - tetrad of microspores
|
Os10g0471100
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os10g33250.3
LOC_Os10g33250.2
LOC_Os10g33250.1
|
|
|
CDPK9
|
OsCDPK9
OsCPK9
CPK9
|
CALCIUM-DEPENDENT PROTEIN KINASE 9
|
calcium-dependent protein kinase
|
3
|
Tolerance and resistance - Stress tolerance
Reproductive organ - Pollination, fertilization, fertility
Biochemical character
|
GO:0010857 - calcium-dependent protein kinase activity
GO:0005524 - ATP binding
GO:0005509 - calcium ion binding
GO:0004674 - protein serine/threonine kinase activity
GO:0051592 - response to calcium ion
GO:0018105 - peptidyl-serine phosphorylation
GO:0002237 - response to molecule of bacterial origin
GO:0005886 - plasma membrane
GO:0006970 - response to osmotic stress
GO:0009414 - response to water deprivation
GO:0009651 - response to salt stress
GO:0009737 - response to abscisic acid stimulus
GO:0009409 - response to cold
GO:0019722 - calcium-mediated signaling
GO:0032434 - regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0005513 - detection of calcium ion
|
TO:0000615 - abscisic acid sensitivity
TO:0000303 - cold tolerance
TO:0000276 - drought tolerance
TO:0000180 - spikelet fertility
TO:0006001 - salt tolerance
|
|
Os03g0688300
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os03g48270.1
|
|
|
HWG2
|
hwg2(t)
|
HYBRID WEAKNESS G2
|
hybrid weakness g2
|
11
|
Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness
|
GO:0048544 - recognition of pollen
GO:0007275 - multicellular organismal development
|
|
|
-
|
|
|
|
HK5
|
OHK3
HK
OsHK5
Crl3
Ohk3
OsHK2
|
HISTIDINE KINASE 5
|
histidine kinase 5
His kinase 5
|
10
|
Reproductive organ - Heading date
Reproductive organ - Pollination, fertilization, fertility
Biochemical character
Character as QTL - Plant growth activity
|
GO:0000156 - two-component response regulator activity
GO:0048573 - photoperiodism, flowering
GO:0005524 - ATP binding
GO:0006355 - regulation of transcription, DNA-dependent
GO:0016020 - membrane
GO:0018106 - peptidyl-histidine phosphorylation
GO:0009909 - regulation of flower development
GO:0004673 - protein histidine kinase activity
GO:0048831 - regulation of shoot development
GO:0009884 - cytokinin receptor activity
GO:0009735 - response to cytokinin stimulus
GO:0048364 - root development
GO:0009736 - cytokinin mediated signaling
GO:0000155 - two-component sensor activity
|
TO:0000167 - cytokinin sensitivity
TO:0000137 - days to heading
TO:0002616 - flowering time
TO:0000152 - panicle number
TO:0000370 - leaf width
TO:0000485 - sterility related trait
TO:0000357 - growth and development trait
TO:0000654 - shoot development trait
TO:0000622 - flower development trait
TO:0000656 - root development trait
TO:0000373 - inflorescence anatomy and morphology trait
|
|
Os10g0362300
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os10g21810.1
LOC_Os10g21810.2
|
|
|
CKT1
|
OHK5
HK
OsHK6
HK6
Crl1a
Ohk5
OsHK1
OsCKT1
ABL1
OsABL1
|
CYTOKININ TOLERANT 1
|
histidine kinase 6
His kinase 6
cytokinin tolerant 1
adaxial-abaxial bipolar leaf1
ADAXIAL-ABAXIAL BIPOLAR LEAF 1
|
2
|
Character as QTL - Plant growth activity
Reproductive organ - Pollination, fertilization, fertility
Biochemical character
Reproductive organ - Heading date
Vegetative organ - Leaf
Vegetative organ - Root
|
GO:0048831 - regulation of shoot development
GO:0009909 - regulation of flower development
GO:0009736 - cytokinin mediated signaling
GO:0018106 - peptidyl-histidine phosphorylation
GO:0051302 - regulation of cell division
GO:0000155 - two-component sensor activity
GO:0004673 - protein histidine kinase activity
GO:0048366 - leaf development
GO:0016020 - membrane
GO:0005783 - endoplasmic reticulum
GO:0005982 - starch metabolic process
GO:0005985 - sucrose metabolic process
GO:0009735 - response to cytokinin stimulus
GO:0009884 - cytokinin receptor activity
GO:0010109 - regulation of photosynthesis
GO:0015995 - chlorophyll biosynthetic process
GO:0043455 - regulation of secondary metabolic process
GO:0048364 - root development
GO:0048573 - photoperiodism, flowering
GO:0005524 - ATP binding
GO:0000156 - two-component response regulator activity
GO:0006355 - regulation of transcription, DNA-dependent
|
TO:0000656 - root development trait
TO:0000655 - leaf development trait
TO:0001015 - photosynthetic rate
TO:0000522 - stomatal conductance
TO:0000055 - leaf lamina pubescence
TO:0000135 - leaf length
TO:0002758 - flag leaf lamina width
TO:0000399 - grain thickness
TO:0002759 - grain number
TO:0000040 - panicle length
TO:0000316 - photosynthetic ability
TO:0002637 - leaf size
TO:0000485 - sterility related trait
TO:0000152 - panicle number
TO:0002616 - flowering time
TO:0000137 - days to heading
TO:0006020 - shoot apical meristem development
TO:0000654 - shoot development trait
TO:0000622 - flower development trait
TO:0000373 - inflorescence anatomy and morphology trait
TO:0000370 - leaf width
TO:0000357 - growth and development trait
TO:0000167 - cytokinin sensitivity
|
PO:0007520 - root development stage
PO:0000025 - root tip
PO:0005029 - root primordium
PO:0000027 - lateral root tip
PO:0020121 - lateral root
|
Os02g0738400
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os02g50480.1
|
|
|
AHP1
|
OHP1
HPt
OsAHP1
Hpt2
Ohp1
OsHP2
HP2
OsHpt2
OsHPt2
OsHP02
|
HISTIDINE CONTAINING PHOSPHOTRANSMITTER 1
|
histidine containing phosphotransmitter
authentic His-containing phosphotransfer protein 1
Authentic Histidine Phosphotransfer protein 1
|
8
|
Reproductive organ - Pollination, fertilization, fertility
Biochemical character
Vegetative organ - Leaf
Vegetative organ - Culm
Tolerance and resistance - Stress tolerance
Vegetative organ - Root
|
GO:0000160 - two-component signal transduction system (phosphorelay)
GO:0009723 - response to ethylene stimulus
GO:0004871 - signal transducer activity
GO:0009736 - cytokinin mediated signaling
GO:0009735 - response to cytokinin stimulus
|
TO:0006001 - salt tolerance
TO:0000420 - fertility related trait
TO:0000095 - osmotic response sensitivity
TO:0000173 - ethylene sensitivity
TO:0000249 - leaf senescence
TO:0000227 - root length
TO:0000207 - plant height
TO:0000346 - tiller number
TO:0000167 - cytokinin sensitivity
TO:0000656 - root development trait
|
PO:0000230 - inflorescence meristem
PO:0020148 - shoot apical meristem
|
Os08g0557700
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os08g44350.1
|
|
|
AHP2
|
OHP2
HPt
OsAHP2 Hpt3
Ohp2
OsHP1
HP1
OsHpt3
OsHP01
|
HISTIDINE CONTAINING PHOSPHOTRANSMITTER 2
|
histidine containing phosphotransmitter
authentic His-containing phosphotransfer protein 2
histidine phosphotransfer protein 2
|
9
|
Tolerance and resistance - Stress tolerance
Reproductive organ - Pollination, fertilization, fertility
Vegetative organ - Culm
Vegetative organ - Leaf
Biochemical character
Vegetative organ - Root
|
GO:0000160 - two-component signal transduction system (phosphorelay)
GO:0004871 - signal transducer activity
GO:0009723 - response to ethylene stimulus
GO:0009735 - response to cytokinin stimulus
GO:0009736 - cytokinin mediated signaling
|
TO:0000207 - plant height
TO:0000420 - fertility related trait
TO:0000656 - root development trait
TO:0000173 - ethylene sensitivity
TO:0000346 - tiller number
TO:0006001 - salt tolerance
TO:0000167 - cytokinin sensitivity
TO:0000227 - root length
TO:0000095 - osmotic response sensitivity
TO:0000249 - leaf senescence
|
PO:0020148 - shoot apical meristem
PO:0000230 - inflorescence meristem
|
Os09g0567400
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os09g39400.2
LOC_Os09g39400.1
|
|
|
DLC1
|
RR24
OsRR24
Rrb2
Orr4
OsRR17
RR17
OsRRB2
RRB2
OsRR24/LEPTO1
OsLEPTO1
LEPTO1
OsDLC1
|
DEFECTIVE LEPTOTENE CHROMOSOME 1
|
B-type response regulator 4
B-type RR 2
LEPTOTENE1
LEPTOTENE 1
Defective Leptotene Chromosome 1
|
2
|
Reproductive organ - Pollination, fertilization, fertility - Sterility
Tolerance and resistance - Stress tolerance
Heterochrony
Reproductive organ - Pollination, fertilization, fertility - Meiosis
|
GO:0009737 - response to abscisic acid stimulus
GO:0009753 - response to jasmonic acid stimulus
GO:0009414 - response to water deprivation
GO:0045449 - regulation of transcription
GO:0000156 - two-component response regulator activity
GO:0000160 - two-component signal transduction system (phosphorelay)
GO:0045893 - positive regulation of transcription, DNA-dependent
GO:0005634 - nucleus
GO:0009554 - megasporogenesis
GO:0048653 - anther development
GO:0012501 - programmed cell death
GO:0009555 - pollen development
GO:0000237 - leptotene
GO:0009736 - cytokinin mediated signaling
GO:0051276 - chromosome organization
GO:0042138 - meiotic DNA double-strand break formation
GO:0052543 - callose deposition in cell wall
GO:0009409 - response to cold
GO:0009735 - response to cytokinin stimulus
|
TO:0000303 - cold tolerance
TO:0000172 - jasmonic acid sensitivity
TO:0000276 - drought tolerance
TO:0000167 - cytokinin sensitivity
TO:0000485 - sterility related trait
TO:0000615 - abscisic acid sensitivity
|
PO:0009013 - portion of meristem tissue
PO:0009049 - inflorescence
PO:0009047 - stem
PO:0025313 - tapetum
PO:0009009 - plant embryo
PO:0009005 - root
|
Os02g0182100
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os02g08500.1
|
|
|
HWH1
|
hwh1
|
HYBRID WEAKNESS H1
|
hybrid weakness h1
|
2
|
Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness
|
GO:0048544 - recognition of pollen
GO:0007275 - multicellular organismal development
|
|
|
Os02g0621800
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os02g40840.1
|
|
|
HWH2
|
OsHWH2
AZT5
OsAZT5
OsTMT5
TMT5
|
HYBRID WEAKNESS H2
|
hybrid weakness h2
PUTATIVE HEXOSE TRANSPORTER PROTEIN
AZT protein 5
AZT-type monosaccharide transporter 5
monosaccharide transporter AZT5
tonoplast monosaccharide transporter 5
|
11
|
Biochemical character
Tolerance and resistance - Stress tolerance
Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness
|
GO:0009651 - response to salt stress
GO:0015293 - symporter activity
GO:0048544 - recognition of pollen
GO:0016020 - membrane
GO:0007275 - multicellular organismal development
|
TO:0006001 - salt tolerance
|
PO:0009049 - inflorescence
PO:0025281 - pollen
|
Os11g0475600
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os11g28610.1
|
|
|
SAF
|
SaF
OsFbox019
OsFbox19
Os_F0070
OsFBD1
FBD1
|
HYBRID STERILITY
|
Hybrid male sterility
F-box protein 19
F-box-type E3 ubiquitin ligase D1
|
1
|
Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility
|
GO:0009556 - microsporogenesis
GO:0016829 - lyase activity
|
TO:0000053 - pollen sterility
TO:0000042 - f1-hybrid incompatibility
|
PO:0020091 - obsolete microgametophyte
|
Os01g0578500
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os01g39670.1
|
|
|
SAM
|
SaM
|
HYBRID STERILITY
|
Hybrid male sterility
|
1
|
Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility
|
GO:0009556 - microsporogenesis
GO:0019789 - SUMO ligase activity
|
TO:0000042 - f1-hybrid incompatibility
TO:0000053 - pollen sterility
|
PO:0020091 - obsolete microgametophyte
|
Os01g0578700
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os01g39680.1
LOC_Os01g39680.2
LOC_Os01g39680.3
|
|
|
AOX1A
|
Ao1-1
AOX1a
OsAOX1a
AOX 1a
|
ALTERNATIVE OXIDASE 1A
|
alternative oxidase-1a
ubiquinol oxidase 1a
|
4
|
Biochemical character
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Tolerance and resistance - Stress tolerance
|
GO:0009916 - alternative oxidase activity
GO:0005740 - mitochondrial envelope
GO:0070469 - respiratory chain
GO:0046872 - metal ion binding
GO:0022900 - electron transport chain
GO:0016021 - integral to membrane
GO:0016491 - oxidoreductase activity
GO:0007585 - respiratory gaseous exchange
GO:0009408 - response to heat
|
TO:0000259 - heat tolerance
TO:0000432 - temperature response trait
|
PO:0000003 - whole plant
|
Os04g0600200
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os04g51150.1
|
|
|
DCW11
|
DCW11
OsPP2C13
PP2C13
OsPP22
|
DOWN-REGULATED GENE 11
|
Probable protein phosphatase 2C 13
protein phosphatase 2C 13
protein phosphatase 2C13
protein phosphatase 22
|
2
|
Biochemical character
Reproductive organ - Pollination, fertilization, fertility - Male sterility
|
GO:0004722 - protein serine/threonine phosphatase activity
GO:0006470 - protein amino acid dephosphorylation
GO:0008287 - protein serine/threonine phosphatase complex
GO:0000287 - magnesium ion binding
GO:0030145 - manganese ion binding
|
|
|
Os02g0255100
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os02g15594.1
|
|
|
RF7
|
RF7
|
RESTORATION OF FERTILITY ７
|
|
12
|
Reproductive organ - Pollination, fertilization, fertility - Fertility restoration
|
GO:0007275 - multicellular organismal development
|
|
|
-
|
|
|
|
ABI5
|
OsABI5
OsbZIP10
OsABF1
OREB1
OsABI5-1
OsABI5-2
OsOREB1
OREB1
|
ABA INSENSITIVE 5
|
ABA Insensitive 5
bZIP-type transcription factor ABI5
bZIP transcription factors OsABI5
bZIP transcription factor 10
Abscisic acid insensitive 5
|
1
|
Seed - Physiological traits - Storage substances
Character as QTL - Yield and productivity
Seed - Morphological traits - Grain shape
Character as QTL - Grain quality
Character as QTL - Germination
Seed - Physiological traits - Dormancy
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Tolerance and resistance - Stress tolerance
|
GO:0005985 - sucrose metabolic process
GO:0009733 - response to auxin stimulus
GO:0005982 - starch metabolic process
GO:0010581 - regulation of starch biosynthetic process
GO:0009753 - response to jasmonic acid stimulus
GO:0009739 - response to gibberellin stimulus
GO:0051171 - regulation of nitrogen compound metabolic process
GO:0045454 - cell redox homeostasis
GO:0003700 - transcription factor activity
GO:0009738 - abscisic acid mediated signaling
GO:0045893 - positive regulation of transcription, DNA-dependent
GO:0009651 - response to salt stress
GO:0009737 - response to abscisic acid stimulus
GO:0009787 - regulation of abscisic acid mediated signaling
GO:0010187 - negative regulation of seed germination
GO:0042744 - hydrogen peroxide catabolic process
GO:0019740 - nitrogen utilization
GO:0009845 - seed germination
GO:0005634 - nucleus
GO:0031667 - response to nutrient levels
GO:0046345 - abscisic acid catabolic process
GO:0010162 - seed dormancy
GO:0009409 - response to cold
GO:0009414 - response to water deprivation
GO:0006995 - cellular response to nitrogen starvation
GO:0010152 - pollen maturation
GO:0043565 - sequence-specific DNA binding
GO:0045449 - regulation of transcription
GO:0010029 - regulation of seed germination
GO:0010372 - positive regulation of gibberellin biosynthetic process
GO:0042594 - response to starvation
GO:0030187 - melatonin biosynthetic process
GO:0009725 - response to hormone stimulus
|
TO:0000166 - gibberellic acid sensitivity
TO:0000397 - grain size
TO:0000253 - seed dormancy
TO:0000276 - drought tolerance
TO:0000483 - germinability at low temperature
TO:0000172 - jasmonic acid sensitivity
TO:0000300 - glucose content
TO:0000455 - seed set percent
TO:0000303 - cold tolerance
TO:0000919 - grain weight
TO:0000250 - vigor related trait
TO:0000696 - starch content
TO:0000040 - panicle length
TO:0000162 - seed quality
TO:0000420 - fertility related trait
TO:0000462 - gelatinization temperature
TO:0000211 - gel consistency
TO:0000196 - amylose content
TO:0000163 - auxin sensitivity
TO:0000396 - grain yield
TO:0002667 - abscisic acid content
TO:0002672 - auxin content
TO:0000615 - abscisic acid sensitivity
TO:0000097 - amylopectin content
TO:0000011 - nitrogen sensitivity
TO:0000401 - plant growth hormone sensitivity
TO:0000604 - fat and essential oil content
TO:0000382 - 1000-seed weight
TO:0000430 - germination rate
TO:0002658 - starch grain synthesis
TO:0002656 - starch grain shape
TO:0000605 - hydrogen peroxide content
TO:0000266 - chalky endosperm
TO:0000134 - alkali digestion
TO:0000590 - grain weight
TO:0000399 - grain thickness
TO:0000429 - salt sensitivity
TO:0000487 - endosperm color
TO:0000053 - pollen sterility
TO:0002653 - endosperm storage protein content
|
PO:0020091 - obsolete microgametophyte
PO:0025500 - whole plant fruit development stage
PO:0009049 - inflorescence
PO:0009010 - seed
PO:0007057 - 0 seed germination stage
|
Os01g0859300
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os01g64000.1
LOC_Os01g64000.2
LOC_Os01g64000.3
|
|
|
AGO18
|
OsAGO18
|
ARGONAUTE 18
|
Protein argonaute 18
Argonaute18
|
7
|
Reproductive organ - Pollination, fertilization, fertility - Meiosis
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Tolerance and resistance - Disease resistance
Other
|
GO:0048232 - male gamete generation
GO:0009555 - pollen development
GO:0048229 - gametophyte development
GO:0031047 - gene silencing by RNA
GO:0003676 - nucleic acid binding
GO:0051607 - defense response to virus
GO:0007126 - meiosis
GO:0005739 - mitochondrion
|
TO:0000148 - viral disease resistance
TO:0000437 - male sterility
|
PO:0009066 - anther
|
Os07g0471300
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os07g28850.1
|
|
|
AGO1B
|
OsAGO1b
AGO1b
AGO1-2
|
ARGONAUTE 1B
|
Protein argonaute 1B
|
4
|
Vegetative organ - Leaf
Reproductive organ - Pollination, fertilization, fertility
Other
Vegetative organ - Culm
Reproductive organ - Spikelet, flower, glume, awn
|
GO:0003676 - nucleic acid binding
GO:0005737 - cytoplasm
GO:0048366 - leaf development
GO:0005634 - nucleus
GO:0031047 - gene silencing by RNA
|
TO:0000207 - plant height
TO:0000346 - tiller number
TO:0000455 - seed set percent
TO:0000421 - pollen fertility
TO:0000655 - leaf development trait
|
PO:0000002 - anther wall
PO:0025034 - leaf
PO:0001050 - leaf development stage
|
Os04g0566500
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os04g47870.2
LOC_Os04g47870.1
|
|
|
AGO1D
|
OsAGO1d
AGO1d
|
ARGONAUTE 1D
|
Protein argonaute 1D
|
6
|
Tolerance and resistance - Stress tolerance
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Other
|
GO:0009409 - response to cold
GO:0043067 - regulation of programmed cell death
GO:0003676 - nucleic acid binding
GO:0005739 - mitochondrion
GO:0003723 - RNA binding
GO:0031047 - gene silencing by RNA
GO:0048653 - anther development
|
TO:0002601 - stamen size
TO:0000067 - genic male sterility-thermo sensitive
TO:0000214 - anther shape
TO:0000215 - stamen anatomy and morphology trait
TO:0000437 - male sterility
TO:0000303 - cold tolerance
TO:0000421 - pollen fertility
TO:0002609 - stamen length
|
PO:0000002 - anther wall
PO:0009066 - anther
PO:0001004 - anther development stage
PO:0001032 - E anther wall tapetum degeneration initiated stage
|
Os06g0729300
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os06g51310.1
LOC_Os06g51310.2
|
|
|
RDR2
|
OsRDR2
FEM1
OsFEM1
|
RNA-DEPENDENT RNA POLYMERASE 2
|
RNA-dependent RNA polymerase 2
Probable RNA-dependent RNA polymerase 2
Five Elements Mountain 1
|
4
|
Tolerance and resistance - Disease resistance
Biochemical character
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Reproductive organ - Pollination, fertilization, fertility - Female sterility
|
GO:0003968 - RNA-directed RNA polymerase activity
GO:0030422 - production of siRNA involved in RNA interference
GO:0003723 - RNA binding
GO:0031047 - gene silencing by RNA
GO:0043045 - DNA methylation during embryonic development
GO:0042742 - defense response to bacterium
GO:0009555 - pollen development
GO:0048443 - stamen development
GO:0051445 - regulation of meiotic cell cycle
GO:0010426 - DNA methylation on cytosine within a CHH sequence
GO:0009553 - embryo sac development
GO:0048229 - gametophyte development
|
TO:0000455 - seed set percent
TO:0000175 - bacterial blight disease resistance
TO:0002676 - brassinosteroid content
TO:0000421 - pollen fertility
TO:0002675 - gibberellic acid content
|
|
Os04g0465700
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os04g39160.1
|
|
|
YSL16
|
OsYSL16
Os-YSL16
OsYs14
Ys14
|
YELLOW STRIP-LIKE GENE 16
|
rice YSL (yellow stripe-like) gene 16
Probable metal-nicotianamine transporter YSL16
Protein YELLOW STRIPE LIKE 16
yellow stripe 1-like transporter 16
Yellow stripe-like16
Yellow Stripe1-Like 16
|
4
|
Biochemical character
Reproductive organ - Pollination, fertilization, fertility
Tolerance and resistance - Stress tolerance
|
GO:0042594 - response to starvation
GO:0055085 - transmembrane transport
GO:0016020 - membrane
GO:0016021 - integral to membrane
GO:0051982 - copper-nicotianamine transmembrane transporter activity
GO:0009846 - pollen germination
GO:0010167 - response to nitrate
GO:0060359 - response to ammonium ion
|
TO:0000421 - pollen fertility
TO:0000021 - copper sensitivity
|
PO:0009080 - spikelet rachilla
PO:0009037 - lemma
PO:0025034 - leaf
PO:0005020 - vascular bundle
PO:0009038 - palea
|
Os04g0542800
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os04g45900.1
|
|
|
TIP4;1
|
OsTIP4;1
TIP4-1
|
TONOPLAST INTRINSIC PROTEIN 4;1
|
Probable aquaporin TIP4-1
Tonoplast intrinsic protein 4-1
|
5
|
Reproductive organ - Pollination, fertilization, fertility
Biochemical character
|
GO:0005773 - vacuole
GO:0005215 - transporter activity
GO:0009566 - fertilization
GO:0016021 - integral to membrane
GO:0006810 - transport
|
|
|
Os05g0231700
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os05g14240.1
LOC_Os05g14240.2
|
|
|
TOP6A1
|
OsTOP6A1
OsSPO11-1
OsSPO11A
SPO11-1
|
TOPOISOMERASE 6 SUBUNIT A1
|
topoisomerase 6 subunit A1
sporulation protein11-1
SPORULATION11-1
|
3
|
Reproductive organ - Pollination, fertilization, fertility - Meiosis
Biochemical character
|
GO:0009414 - response to water deprivation
GO:0003916 - DNA topoisomerase activity
GO:0042138 - meiotic DNA double-strand break formation
GO:0051026 - chiasma formation
GO:0003677 - DNA binding
GO:0007131 - reciprocal meiotic recombination
GO:0000706 - meiotic DNA double-strand break processing
GO:0005524 - ATP binding
GO:0005634 - nucleus
GO:0005694 - chromosome
GO:0009651 - response to salt stress
GO:0045143 - homologous chromosome segregation
GO:0007129 - synapsis
GO:0051321 - meiotic cell cycle
GO:0016853 - isomerase activity
GO:0034090 - maintenance of meiotic sister chromatid cohesion
|
TO:0000485 - sterility related trait
|
|
Os03g0752200
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os03g54091.1
|
|
|
TOP6A2
|
OsTOP6A2
OsSpo11-2
OsSPO11-2
OsSPO11B
SPO11-2
|
TOPOISOMERASE 6 SUBUNIT A2
|
topoisomerase 6 subunit A2
|
8
|
Reproductive organ - Pollination, fertilization, fertility - Meiosis
Reproductive organ - Pollination, fertilization, fertility
Biochemical character
|
GO:0003916 - DNA topoisomerase activity
GO:0051321 - meiotic cell cycle
GO:0009651 - response to salt stress
GO:0007129 - synapsis
GO:0045143 - homologous chromosome segregation
GO:0007132 - meiotic metaphase I
GO:0009414 - response to water deprivation
|
TO:0000485 - sterility related trait
|
|
Os08g0156900
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os08g06050.1
|
|
|
GPS1
|
gps1
|
GAMETOPHYTIC POLLEN STERILITY 1
|
|
|
Reproductive organ - Pollination, fertilization, fertility - Male sterility
|
GO:0007275 - multicellular organismal development
|
|
|
-
|
|
|
|
GPS10
|
gps10
|
GAMETOPHYTIC POLLEN STERILITY 10
|
|
|
Reproductive organ - Pollination, fertilization, fertility - Male sterility
|
GO:0007275 - multicellular organismal development
|
|
|
-
|
|
|
|
GPS11
|
gps11
|
GAMETOPHYTIC POLLEN STERILITY 11
|
|
|
Reproductive organ - Pollination, fertilization, fertility - Male sterility
|
GO:0007275 - multicellular organismal development
|
|
|
-
|
|
|
|
GPS12
|
gps12
|
GAMETOPHYTIC POLLEN STERILITY 12
|
|
|
Reproductive organ - Pollination, fertilization, fertility - Male sterility
|
GO:0007275 - multicellular organismal development
|
|
|
-
|
|
|
|
GPS2
|
gps2
|
GAMETOPHYTIC POLLEN STERILITY 2
|
|
|
Reproductive organ - Pollination, fertilization, fertility - Male sterility
|
GO:0007275 - multicellular organismal development
|
|
|
-
|
|
|
|
GPS3
|
gps3
|
GAMETOPHYTIC POLLEN STERILITY 3
|
|
|
Reproductive organ - Pollination, fertilization, fertility - Male sterility
|
GO:0007275 - multicellular organismal development
|
|
|
-
|
|
|
|
GPS4
|
gps4
|
GAMETOPHYTIC POLLEN STERILITY 4
|
|
|
Reproductive organ - Pollination, fertilization, fertility - Male sterility
|
GO:0007275 - multicellular organismal development
|
|
|
-
|
|
|
|
GPS5
|
gps5
|
GAMETOPHYTIC POLLEN STERILITY 5
|
|
|
Reproductive organ - Pollination, fertilization, fertility - Male sterility
|
GO:0007275 - multicellular organismal development
|
|
|
-
|
|
|
|
GPS6
|
gps6
|
GAMETOPHYTIC POLLEN STERILITY 6
|
|
|
Reproductive organ - Pollination, fertilization, fertility - Male sterility
|
GO:0007275 - multicellular organismal development
|
|
|
-
|
|
|
|
GPS7
|
gps7
|
GAMETOPHYTIC POLLEN STERILITY 7
|
|
|
Reproductive organ - Pollination, fertilization, fertility - Male sterility
|
GO:0007275 - multicellular organismal development
|
|
|
-
|
|
|
|
GPS8
|
gps8
|
GAMETOPHYTIC POLLEN STERILITY 8
|
|
|
Reproductive organ - Pollination, fertilization, fertility - Male sterility
|
GO:0007275 - multicellular organismal development
|
|
|
-
|
|
|
|
GPS9
|
gps9
|
GAMETOPHYTIC POLLEN STERILITY 9
|
|
|
Reproductive organ - Pollination, fertilization, fertility - Male sterility
|
GO:0007275 - multicellular organismal development
|
|
|
-
|
|
|
|
PAIR2
|
Pair2
OsPAIR2
OsASY1
|
HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 2
|
Homologous pairing aberration in rice meiosis 2
|
9
|
Reproductive organ - Pollination, fertilization, fertility - Meiosis
|
GO:0005634 - nucleus
GO:0000238 - zygotene
GO:0000228 - nuclear chromosome
GO:0007129 - synapsis
GO:0000237 - leptotene
GO:0009556 - microsporogenesis
GO:0009554 - megasporogenesis
|
TO:0000729 - meiotic cell cycle trait
|
PO:0000431 - megasporocyte
PO:0020047 - microsporocyte
|
Os09g0506800
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os09g32930.3
LOC_Os09g32930.1
|
|
|
RAG
|
MADS3
OsMADS3
OsMADS3(t)
RMADS222
RAG1
rf3
|
RICE AGAMOUS
|
MADS box gene3
MADS-box transcription factor 3
Protein AGAMOUS-like
fertility restoration 3
|
1
|
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Reproductive organ - panicle
Reproductive organ - Spikelet, flower, glume, awn
Other
Reproductive organ - Inflorescence
|
GO:0048653 - anther development
GO:0030154 - cell differentiation
GO:0043565 - sequence-specific DNA binding
GO:0010229 - inflorescence development
GO:0009908 - flower development
GO:0003677 - DNA binding
GO:0003700 - transcription factor activity
GO:0005634 - nucleus
GO:0006350 - transcription
GO:0006355 - regulation of transcription, DNA-dependent
|
TO:0000622 - flower development trait
TO:0006023 - lodicule development trait
TO:0000621 - inflorescence development trait
TO:0006009 - lodicule anatomy and morphology trait
TO:0000215 - stamen anatomy and morphology trait
|
PO:0009029 - stamen
PO:0007615 - flower development stage
PO:0009036 - lodicule
PO:0001004 - anther development stage
PO:0001049 - lodicule development stage
PO:0001083 - inflorescence development stage
|
Os01g0201700
Oryzabase
(
IRGSP 1.0
/
Build5
)
Rap
(
IRGSP 1.0
/
Build5
)
|
LOC_Os01g10504.3
LOC_Os01g10504.2
LOC_Os01g10504.1
|
|
|
SPS1
|
sps1
|
SPOROPHYTIC POLLEN STERILITY 1
|
|
|
Reproductive organ - Pollination, fertilization, fertility - Male sterility
|
GO:0007275 - multicellular organismal development
|
|
|
-
|
|
|
|
SPS10
|
sps10
|
SPOROPHYTIC POLLEN STERILITY 10
|
|
|
Reproductive organ - Pollination, fertilization, fertility - Male sterility
|
GO:0007275 - multicellular organismal development
|
|
|
-
|
|
|
|
SPS11
|
sps11
|
SPOROPHYTIC POLLEN STERILITY 11
|
|
|
Reproductive organ - Pollination, fertilization, fertility - Male sterility
|
GO:0007275 - multicellular organismal development
|
|
|
-
|
|
|
|
SPS12
|
sps12
|
SPOROPHYTIC POLLEN STERILITY 12
|
|
7
|
Reproductive organ - Pollination, fertilization, fertility - Male sterility
|
GO:0007275 - multicellular organismal development
|
|
|
-
|
|
|
|
SPS2
|
sps2
|
SPOROPHYTIC POLLEN STERILITY 2
|
|
|
Reproductive organ - Pollination, fertilization, fertility - Male sterility
|
GO:0007275 - multicellular organismal development
|
|
|
-
|
|
|
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