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Search Condition : Filter((traitClassFacetEn:025_Seed OR traitClassFacetEn:026_Seed - Morphological traits OR traitClassFacetEn:027_Seed - Morphological traits - Embryo OR traitClassFacetEn:028_Seed - Morphological traits - Endosperm OR traitClassFacetEn:029_Seed - Morphological traits - Grain shape OR traitClassFacetEn:030_Seed - Physiological traits OR traitClassFacetEn:031_Seed - Physiological traits - Dormancy OR traitClassFacetEn:032_Seed - Physiological traits - Longevity OR traitClassFacetEn:033_Seed - Physiological traits - Storage substances OR traitClassFacetEn:034_Seed - Physiological traits - Shattering OR traitClassFacetEn:035_Seed - Physiological traits - Taste))
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CGSNL
Gene
Symbol 		Gene symbol synonym(s) CGSNL Gene Name Gene name synonym(s) Chr. No. Trait Class Gene Ontology Trait Ontology Plant Ontology RAP ID MSU ID Mutant
Image
GID1 gid1
OsGID1
Thl
Os GID1
 GIBBERELLIN INSENSITIVE DWARF1 GIBBERELLIN-INSENSITIVE DWARF1
Gibberellin receptor GID1
Gibberellin-insensitive dwarf protein 1
Protein GIBBERELLIN INSENSITIVE DWARF1
Thumbelina
GA-insensitive dwarf 1
 5 Tolerance and resistance - Disease resistance
Seed - Physiological traits - Dormancy
Vegetative organ - Culm
Tolerance and resistance - Stress tolerance
 GO:0004872 - receptor activity
GO:0010162 - seed dormancy
GO:0009609 - response to symbiotic bacterium
GO:0009414 - response to water deprivation
GO:0009738 - abscisic acid mediated signaling
GO:0010115 - regulation of abscisic acid biosynthetic process
GO:0006109 - regulation of carbohydrate metabolic process
GO:0009740 - gibberellic acid mediated signaling
GO:0010271 - regulation of chlorophyll catabolic process
GO:0014001 - sclerenchyma cell differentiation
GO:2000037 - regulation of stomatal complex patterning
GO:0009737 - response to abscisic acid stimulus
GO:2000038 - regulation of stomatal complex development
GO:0005634 - nucleus
GO:0008152 - metabolic process
GO:0016787 - hydrolase activity
GO:0009409 - response to cold
GO:0050832 - defense response to fungus
GO:0009739 - response to gibberellin stimulus
 TO:0000615 - abscisic acid sensitivity
TO:0000074 - blast disease
TO:0000135 - leaf length
TO:0000175 - bacterial blight disease resistance
TO:0000303 - cold tolerance
TO:0000286 - submergence sensitivity
TO:0000566 - stomatal frequency
TO:0000207 - plant height
TO:0000470 - vascular tissue related trait
TO:0000166 - gibberellic acid sensitivity
TO:0000276 - drought tolerance
TO:0000291 - carbohydrate content
TO:0000495 - chlorophyll content
TO:0000253 - seed dormancy
 Os05g0407500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g33730.1
NPP1 OsNPP1
OsPAP27b
PAP27B
 NUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE 1 Nucleotide Pyrophosphatase/Phosphodiesterase 1
Purple acid phosphatase 27b
 8 Tolerance and resistance - Stress tolerance
Seed - Physiological traits - Storage substances
Biochemical character
 GO:0001666 - response to hypoxia
GO:0004528 - phosphodiesterase I activity
GO:0046872 - metal ion binding
GO:0003993 - acid phosphatase activity
GO:0004551 - nucleotide diphosphatase activity
GO:0005618 - cell wall
 TO:0000696 - starch content
TO:0000207 - plant height
TO:0000015 - oxygen sensitivity
TO:0000233 - root volume
 Os08g0531000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g41880.1
CIPK01 OsCIPK01
CIPK1
OsCIPK1
OsSnRK3.3
SnRK3.3
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 1 CBL-interacting protein kinase 1
Sucrose nonfermenting-1-related protein kinase 3.3
 1 Character as QTL - Yield and productivity
Biochemical character
Tolerance and resistance - Stress tolerance
Seed - Morphological traits - Grain shape
Vegetative organ - Culm
 GO:0009409 - response to cold
GO:0030307 - positive regulation of cell growth
GO:0009414 - response to water deprivation
GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0004713 - protein tyrosine kinase activity
GO:0009651 - response to salt stress
GO:0009740 - gibberellic acid mediated signaling
GO:0009413 - response to flooding
GO:0006468 - protein amino acid phosphorylation
GO:0030145 - manganese ion binding
GO:0007165 - signal transduction
 TO:0000397 - grain size
TO:0000303 - cold tolerance
TO:0000382 - 1000-seed weight
TO:0020033 - glume length
TO:0020034 - glume width
TO:0000734 - grain length
TO:0006001 - salt tolerance
TO:0000276 - drought tolerance
TO:0000114 - flooding related trait
TO:0000590 - grain weight
TO:0000391 - seed size
TO:0000396 - grain yield
TO:0002675 - gibberellic acid content
TO:0000207 - plant height
TO:0000432 - temperature response trait
 PO:0025034 - leaf
Os01g0292200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g18800.3
LOC_Os01g18800.4
LOC_Os01g18800.1
LOC_Os01g18800.2
LOC_Os01g18800.5
MADS51 OsMADS51
OsMADS65
MADS65
qHd1
DLN36
OsDLN36
 MADS BOX GENE 51 MADS box gene51
DLN repressor 36
DLN motif protein 36
 1 Character as QTL - Yield and productivity
Tolerance and resistance - Stress tolerance
Character as QTL - Plant growth activity
Tolerance and resistance - Disease resistance
Other
Seed - Morphological traits
Reproductive organ - Heading date
 GO:0050832 - defense response to fungus
GO:0006355 - regulation of transcription, DNA-dependent
GO:0005634 - nucleus
GO:0003700 - transcription factor activity
GO:0009409 - response to cold
GO:0009408 - response to heat
GO:0006350 - transcription
GO:0043565 - sequence-specific DNA binding
 TO:0002616 - flowering time
TO:0000432 - temperature response trait
TO:0000259 - heat tolerance
TO:0000137 - days to heading
TO:0000303 - cold tolerance
TO:0000074 - blast disease
TO:0000357 - growth and development trait
TO:0000329 - tillering ability
TO:0000590 - grain weight
TO:0000396 - grain yield
TO:0000455 - seed set percent
TO:0000152 - panicle number
TO:0000449 - grain yield per plant
 Os01g0922800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g69850.1
YUCCA4 OsYUCCA4
OsYUC4
YUC4
YUCCA6
OsYUCCA6
 YUCCA-LIKE GENE 4 (YUCCA-like gene)
 1 Tolerance and resistance - Disease resistance
Seed - Morphological traits - Embryo
Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
Biochemical character
 GO:0051707 - response to other organism
GO:0004499 - flavin-containing monooxygenase activity
GO:0009851 - auxin biosynthetic process
GO:0009737 - response to abscisic acid stimulus
GO:0048653 - anther development
GO:0009901 - anther dehiscence
GO:0042594 - response to starvation
GO:0009793 - embryonic development ending in seed dormancy
GO:0009408 - response to heat
GO:0051607 - defense response to virus
 TO:0002672 - auxin content
TO:0000189 - embryoless
TO:0000259 - heat tolerance
TO:0000620 - embryo development trait
TO:0000148 - viral disease resistance
TO:0000615 - abscisic acid sensitivity
TO:0000657 - spikelet anatomy and morphology trait
 PO:0007631 - plant embryo stage
PO:0001004 - anther development stage
PO:0001035 - G anther dehiscence stage
PO:0009066 - anther
Os01g0224700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g12490.1
YUCCA6 OsYUCCA6
OsYUC6
YUC6
 YUCCA-LIKE GENE 6 (YUCCA-like gene)
 7 Tolerance and resistance - Disease resistance
Biochemical character
Tolerance and resistance - Stress tolerance
Seed - Morphological traits - Embryo
 GO:0051607 - defense response to virus
GO:0009629 - response to gravity
GO:0004499 - flavin-containing monooxygenase activity
GO:0009851 - auxin biosynthetic process
GO:0010262 - somatic embryogenesis
GO:0009266 - response to temperature stimulus
 TO:0000432 - temperature response trait
TO:0002693 - gravity response trait
TO:0002672 - auxin content
TO:0000020 - black streak dwarf virus resistance
 PO:0005020 - vascular bundle
PO:0025275 - procambium
PO:0000423 - plant zygote
PO:0025127 - primordium
PO:0020148 - shoot apical meristem
Os07g0437000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g25540.1
YUCCA7 OsYUCCA7
OsYUC7
OsYUC5
YUC5
YUC7
 YUCCA-LIKE GENE 7 (YUCCA-like gene)
 4 Biochemical character
Seed - Morphological traits - Embryo
Tolerance and resistance - Stress tolerance
 GO:0046686 - response to cadmium ion
GO:0010262 - somatic embryogenesis
GO:0009629 - response to gravity
GO:0004499 - flavin-containing monooxygenase activity
GO:0009851 - auxin biosynthetic process
 TO:0002693 - gravity response trait
 PO:0000423 - plant zygote
PO:0009005 - root
Os04g0128900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g03980.1
FLO27 OsbZIP58
bZIP58
OsEnS-92
OsSMF1
SMF1
OsRISBZ1
RISBZ1/bZIP58
RISBZ1
OsFLO27
 FLOURY ENDOSPERM 27 bZIP transcription factor 58
rice seed b-Zipper 1
endosperm-specific gene 92
seed maturation factor 1
rice seed basic leucine zipper 1
RICE SEED bZIP1
 7 Other
Seed - Morphological traits - Endosperm
Seed - Morphological traits - Grain shape
Tolerance and resistance - Stress tolerance
Seed - Physiological traits - Storage substances
Character as QTL - Grain quality
Seed - Physiological traits - Dormancy
 GO:0034976 - response to endoplasmic reticulum stress
GO:0010581 - regulation of starch biosynthetic process
GO:0009960 - endosperm development
GO:0010371 - regulation of gibberellin biosynthetic process
GO:0009408 - response to heat
GO:0005634 - nucleus
GO:0030968 - endoplasmic reticulum unfolded protein response
GO:0012501 - programmed cell death
GO:0010431 - seed maturation
GO:0043565 - sequence-specific DNA binding
GO:0003700 - transcription factor activity
GO:0009845 - seed germination
 TO:0002673 - amino acid content
TO:0000100 - shrunken endosperm
TO:0000487 - endosperm color
TO:0000490 - protein composition related trait
TO:0000590 - grain weight
TO:0000399 - grain thickness
TO:0000402 - grain width
TO:0000734 - grain length
TO:0000196 - amylose content
TO:0000696 - starch content
TO:0002656 - starch grain shape
TO:0000104 - floury endosperm
TO:0002661 - seed maturation
TO:0000432 - temperature response trait
TO:0002653 - endosperm storage protein content
TO:0000259 - heat tolerance
 PO:0007632 - seed maturation stage
PO:0009089 - endosperm
PO:0007633 - endosperm development stage
PO:0005360 - aleurone layer
PO:0007057 - 0 seed germination stage
Os07g0182000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g08420.1
RPBF OsDof3
OsDOF3
OsEnS-34
OsDof10
Dof10
OsDof-10
OsDOF1
DOF1
DOF3
OsRPBF
OsDOF7
 RICE PROLAMIN BOX BINDING FACTOR rice (Oryza sativa) prolamin box binding factor
pyrimidine box-binding protein
endosperm-specific gene 34
Dof zinc factor 10
Dof transcription factor 10
DNA BINDING WITH ONE FINGER 10
 2 Tolerance and resistance
Other
Seed - Physiological traits
Tolerance and resistance - Stress tolerance
Seed - Physiological traits - Storage substances
Seed - Physiological traits - Longevity
 GO:0006952 - defense response
GO:0008270 - zinc ion binding
GO:0009414 - response to water deprivation
GO:0006970 - response to osmotic stress
GO:0006979 - response to oxidative stress
GO:0009651 - response to salt stress
GO:0010029 - regulation of seed germination
GO:0003677 - DNA binding
GO:0045449 - regulation of transcription
 TO:0002673 - amino acid content
TO:0002657 - oxidative stress
TO:0006001 - salt tolerance
TO:0000276 - drought tolerance
TO:0000430 - germination rate
TO:0006004 - raffinose content
TO:0000179 - biotic stress trait
TO:0000095 - osmotic response sensitivity
TO:0000250 - vigor related trait
 PO:0001170 - seed development stage
PO:0009010 - seed
Os02g0252400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g15350.1
WAK98 OsWAK98
OsRLCK287
RLCK287
 WALL-ASSOCIATED KINASE GENE 98 Receptor-like Cytoplasmic Kinase 287
 10 Seed
Biochemical character
Reproductive organ - panicle
Tolerance and resistance - Disease resistance
Tolerance and resistance
 GO:0010229 - inflorescence development
GO:0048316 - seed development
GO:0050832 - defense response to fungus
GO:0042742 - defense response to bacterium
GO:0009611 - response to wounding
GO:0005524 - ATP binding
GO:0004674 - protein serine/threonine kinase activity
 TO:0000175 - bacterial blight disease resistance
TO:0000653 - seed development trait
TO:0000074 - blast disease
TO:0000621 - inflorescence development trait
 PO:0009010 - seed
PO:0009049 - inflorescence
PO:0001170 - seed development stage
PO:0001083 - inflorescence development stage
Os10g0112700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os10g02360.1
AMY1C Amy1A/C*(RAmy1A/C)
alpha Amy10
Amy1C
RAmy1A/C
Amy1A/C*
Amy3
RAmy1C
OsAmy1C
alphaAmy10-C
OsRAmy3A
RAmy3A
 ALPHA-AMYLASE 1C Alpha-amylase1C
Alpha-amylase 1C
Amylase-3
Alpha-amylase-1A
alpha-amylase 10-C
 2 Character as QTL - Grain quality
Biochemical character
Seed - Physiological traits - Dormancy
Tolerance and resistance - Stress tolerance
Character as QTL - Germination
 GO:0009737 - response to abscisic acid stimulus
GO:0009651 - response to salt stress
GO:0004556 - alpha-amylase activity
GO:0009408 - response to heat
GO:0005975 - carbohydrate metabolic process
GO:0005509 - calcium ion binding
GO:0009845 - seed germination
GO:0005983 - starch catabolic process
 TO:0006001 - salt tolerance
TO:0000259 - heat tolerance
TO:0000266 - chalky endosperm
TO:0000615 - abscisic acid sensitivity
 PO:0009010 - seed
PO:0007057 - 0 seed germination stage
PO:0007633 - endosperm development stage
Os02g0765400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g52700.1
CDPK31 OsCDPK31
OsCPK31
CPK31
 CALCIUM-DEPENDENT PROTEIN KINASE 31 calcium-dependent protein kinase
 Seed - Morphological traits - Endosperm
Biochemical character
Seed
 GO:0010857 - calcium-dependent protein kinase activity
GO:0031000 - response to caffeine
GO:0010431 - seed maturation
GO:0043036 - starch grain
 TO:0002661 - seed maturation
 PO:0009001 - fruit
PO:0007633 - endosperm development stage
-
AMY3C Amy3A/B/C*(RAmy3A/B/C)
AmyII-6
AMY1.7
Amy3C
RAmy3A/B/C
Amy3A/B/C*
Amy7
AMY3B
RAmy3C
OsAmy3B
 ALPHA-AMYLASE 3C Alpha-amylase3C
Alpha-amylase isozyme 3C precursor
Alpha-amylase isozyme 3C
Amylase-7
Alpha-amylase-3A
 9 Seed - Physiological traits - Dormancy
Biochemical character
Tolerance and resistance - Stress tolerance
Character as QTL - Germination
 GO:0009737 - response to abscisic acid stimulus
GO:0005509 - calcium ion binding
GO:0009739 - response to gibberellin stimulus
GO:0004556 - alpha-amylase activity
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0005987 - sucrose catabolic process
GO:0005983 - starch catabolic process
GO:0005975 - carbohydrate metabolic process
GO:0009845 - seed germination
GO:0009408 - response to heat
 TO:0000615 - abscisic acid sensitivity
TO:0000259 - heat tolerance
TO:0000166 - gibberellic acid sensitivity
 PO:0007057 - 0 seed germination stage
Os09g0457800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os09g28420.1
SSIIB OsSSIIb
OsSSII-2
SSII-2
SS2
OsSSSIIb
SS2b
 SOLUBLE STARCH SYNTHASE IIB Starch synthase-IIb
starch synthase IIb
"Soluble starch synthase 2-2
chloroplastic/amyloplastic"
Soluble starch synthase II-2
Starch synthase isoform zSTSII-2
 2 Seed - Physiological traits - Storage substances
Tolerance and resistance - Stress tolerance
 GO:0009651 - response to salt stress
GO:0019252 - starch biosynthetic process
GO:0009507 - chloroplast
GO:0009501 - amyloplast
GO:0009011 - starch synthase activity
 TO:0000488 - seed composition based quality trait
TO:0006001 - salt tolerance
 PO:0009072 - plant ovary
PO:0009009 - plant embryo
PO:0009010 - seed
PO:0025034 - leaf
Os02g0744700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g51070.1
SSIIC OsSSIIc
SSII-1
SSII1
 SOLUBLE STARCH SYNTHASE IIC "Soluble starch synthase 2-1
chloroplastic/amyloplastic"
Soluble starch synthase II-1
 10 Seed - Physiological traits - Storage substances
 GO:0009507 - chloroplast
GO:0009501 - amyloplast
GO:0019252 - starch biosynthetic process
GO:0009011 - starch synthase activity
GO:0080026 - response to indolebutyric acid stimulus
GO:0009733 - response to auxin stimulus
 TO:0000163 - auxin sensitivity
 PO:0025034 - leaf
PO:0009089 - endosperm
Os10g0437600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os10g30156.1
SSIIIB OsSSIIIb. SSIII-1
SSIIIa
 SOLUBLE STARCH SYNTHASE IIIB 4 Seed - Physiological traits - Storage substances
Character as QTL - Grain quality
Tolerance and resistance - Stress tolerance
Biochemical character
Character as QTL - Yield and productivity
 GO:0009011 - starch synthase activity
GO:0009501 - amyloplast
GO:0009507 - chloroplast
GO:0019252 - starch biosynthetic process
GO:0010229 - inflorescence development
GO:0009408 - response to heat
 TO:0000604 - fat and essential oil content
TO:0000196 - amylose content
TO:0000396 - grain yield
TO:0000259 - heat tolerance
TO:0000696 - starch content
TO:0000621 - inflorescence development trait
TO:0000382 - 1000-seed weight
 PO:0009089 - endosperm
PO:0001083 - inflorescence development stage
PO:0009009 - plant embryo
PO:0009072 - plant ovary
PO:0009049 - inflorescence
PO:0025034 - leaf
PO:0009010 - seed
Os04g0624600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g53310.1
SSIVA OsSSIVa
SSIV-1
OsSSIV-1
 SOLUBLE STARCH SYNTHASE IVA SOLUBLE STARCH SYNTHASE IV-1
 1 Seed - Physiological traits - Storage substances
Tolerance and resistance - Stress tolerance
 GO:0009501 - amyloplast
GO:0009507 - chloroplast
GO:0009269 - response to desiccation
GO:0009651 - response to salt stress
GO:0019252 - starch biosynthetic process
GO:0009250 - glucan biosynthetic process
GO:0010229 - inflorescence development
GO:0009011 - starch synthase activity
 TO:0006001 - salt tolerance
TO:0000394 - drought related trait
TO:0000621 - inflorescence development trait
 PO:0009072 - plant ovary
PO:0009089 - endosperm
PO:0009009 - plant embryo
PO:0001083 - inflorescence development stage
PO:0025034 - leaf
Os01g0720600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g52250.6
LOC_Os01g52250.5
LOC_Os01g52250.4
LOC_Os01g52250.3
LOC_Os01g52250.1
LOC_Os01g52250.2
SSIVB OsSSIVb
SSIV-2
OsSSIV-2
SSIVb
SSIV-2
SSIV2
OsSSIV2
 SOLUBLE STARCH SYNTHASE IVB SOLUBLE STARCH SYNTHASE IV-2
 5 Seed - Physiological traits - Storage substances
Seed - Morphological traits - Endosperm
Tolerance and resistance - Stress tolerance
 GO:0009269 - response to desiccation
GO:0009507 - chloroplast
GO:0009011 - starch synthase activity
GO:0009960 - endosperm development
GO:0009501 - amyloplast
GO:0005978 - glycogen biosynthetic process
GO:0019252 - starch biosynthetic process
 TO:0000394 - drought related trait
 PO:0009089 - endosperm
PO:0007633 - endosperm development stage
PO:0025034 - leaf
Os05g0533600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g45720.4
LOC_Os05g45720.3
LOC_Os05g45720.2
LOC_Os05g45720.1
NOE1 CATC
OsCat
OsCatC
OsCATC
OsNOE1
noe1
catC
OsCATC
CAT3
OsCAT3
LLM9428
OsLLM9428
 NITRIC OXIDE EXCESS 1 catalase C
catalase isozyme C
nitric oxide excess1
large lesion mimic mutant 9428
 3 Character as QTL - Yield and productivity
Seed - Physiological traits - Shattering
Vegetative organ - Culm
Tolerance and resistance - Lesion mimic
Tolerance and resistance - Stress tolerance
Character as QTL - Plant growth activity
Tolerance and resistance - Disease resistance
Vegetative organ - Leaf
Biochemical character
 GO:0009725 - response to hormone stimulus
GO:0042744 - hydrogen peroxide catabolic process
GO:0005982 - starch metabolic process
GO:0050832 - defense response to fungus
GO:0009414 - response to water deprivation
GO:0009642 - response to light intensity
GO:0010939 - regulation of necrotic cell death
GO:0033484 - nitric oxide homeostasis
GO:0031348 - negative regulation of defense response
GO:0009416 - response to light stimulus
GO:0005634 - nucleus
GO:0043067 - regulation of programmed cell death
GO:0004096 - catalase activity
GO:0006979 - response to oxidative stress
GO:0045454 - cell redox homeostasis
GO:0020037 - heme binding
GO:0042742 - defense response to bacterium
GO:0009409 - response to cold
GO:0010229 - inflorescence development
GO:0010150 - leaf senescence
GO:0050777 - negative regulation of immune response
GO:0009404 - toxin metabolic process
GO:0009651 - response to salt stress
GO:0005739 - mitochondrion
GO:0006801 - superoxide metabolic process
GO:0005777 - peroxisome
GO:0042548 - regulation of photosynthesis, light reaction
GO:0009737 - response to abscisic acid stimulus
GO:0009408 - response to heat
 TO:0000455 - seed set percent
TO:0000259 - heat tolerance
TO:0000276 - drought tolerance
TO:0000063 - mimic response
TO:0000357 - growth and development trait
TO:0000175 - bacterial blight disease resistance
TO:0000074 - blast disease
TO:0000249 - leaf senescence
TO:0000615 - abscisic acid sensitivity
TO:0000401 - plant growth hormone sensitivity
TO:0002657 - oxidative stress
TO:0000605 - hydrogen peroxide content
TO:0002662 - leaf rolling tolerance
TO:0000152 - panicle number
TO:0000621 - inflorescence development trait
TO:0000326 - leaf color
TO:0000447 - filled grain number
TO:0000346 - tiller number
TO:0000207 - plant height
TO:0000382 - 1000-seed weight
TO:0000460 - light intensity sensitivity
TO:0000019 - seedling height
TO:0002637 - leaf size
TO:0000473 - grain shattering
TO:0000075 - light sensitivity
TO:0006001 - salt tolerance
TO:0000303 - cold tolerance
 PO:0020104 - leaf sheath
PO:0001083 - inflorescence development stage
PO:0001054 - 4 leaf senescence stage
PO:0009047 - stem
PO:0025034 - leaf
Os03g0131200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g03910.1
SBE4 RBE4
OsSBE4
BEIIa
QEIIb
BEIIA
OsBEIIa
 STARCH BRANCHING ENZYME 4 Q-enzyme IIb
starch branching enzyme IIb
Starch branching enzyme IIa
 4 Seed - Physiological traits - Storage substances
Seed - Morphological traits - Grain shape
 GO:0005982 - starch metabolic process
GO:0019252 - starch biosynthetic process
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0003844 - 1,4-alpha-glucan branching enzyme activity
GO:0005976 - polysaccharide metabolic process
GO:0009501 - amyloplast
GO:0009568 - amyloplast starch grain
 TO:0000399 - grain thickness
TO:0000734 - grain length
TO:0000097 - amylopectin content
TO:0000489 - carbohydrate composition related trait
TO:0000099 - sugary endosperm
TO:0000162 - seed quality
 PO:0025034 - leaf
Os04g0409200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g33460.1
GHD7 Ghd2
Ghd7
OsGhd7
OsCCT26
OsCMF8
OsI
Ghd7/Hd4
Hd4
EH7-1/Hd4
Ghd7-0a
EH7-1
EH7/Ghd7
EH7
OsEH7
GLW7.1
OsGLW7.1
 HEADING DATE 7 heading date 7
"Grain number
plant height
and heading date7"
"GRAIN NUMBER
PLANT HEIGHT AND HEADING DATE 7"
CCT domain-containing gene 26
CCT (CO, CO-LIKE and TOC1) domain protein 26
CCT domain protein 26
CCT MOTIF FAMILY (CMF) gene 8
Early heading 7
"Grain Length
Width and Weight 7.1"
Grain height date 7
 7 Seed - Physiological traits - Taste
Seed - Physiological traits - Storage substances
Reproductive organ - Heading date
Character as QTL - Plant growth activity
Character as QTL - Yield and productivity
Vegetative organ - Culm
Seed - Physiological traits
Heterochrony
Reproductive organ - Spikelet, flower, glume, awn
Character as QTL - Grain quality
Seed - Morphological traits - Grain shape
 GO:0009648 - photoperiodism
GO:0030307 - positive regulation of cell growth
GO:0006521 - regulation of cellular amino acid metabolic process
GO:0008643 - carbohydrate transport
GO:0015770 - sucrose transport
GO:0010109 - regulation of photosynthesis
GO:0006808 - regulation of nitrogen utilization
GO:0010372 - positive regulation of gibberellin biosynthetic process
GO:0009740 - gibberellic acid mediated signaling
GO:0005985 - sucrose metabolic process
GO:0010229 - inflorescence development
GO:0051171 - regulation of nitrogen compound metabolic process
GO:0009744 - response to sucrose stimulus
GO:0048573 - photoperiodism, flowering
GO:0009416 - response to light stimulus
GO:0048579 - negative regulation of long-day photoperiodism, flowering
GO:0009745 - sucrose mediated signaling
GO:0007623 - circadian rhythm
GO:0006109 - regulation of carbohydrate metabolic process
GO:0042128 - nitrate assimilation
GO:0045892 - negative regulation of transcription, DNA-dependent
GO:0045848 - positive regulation of nitrogen utilization
GO:0051781 - positive regulation of cell division
 TO:0000357 - growth and development trait
TO:0000019 - seedling height
TO:0000456 - spikelet number
TO:0000696 - starch content
TO:0000447 - filled grain number
TO:0000107 - endosperm storage protein-1 content
TO:0000710 - globulin protein content
TO:0000590 - grain weight
TO:0000229 - photoperiod sensitivity
TO:0002680 - albumin content
TO:0000109 - endosperm storage protein-2 content
TO:0000621 - inflorescence development trait
TO:0002653 - endosperm storage protein content
TO:0000382 - 1000-seed weight
TO:0000152 - panicle number
TO:0000011 - nitrogen sensitivity
TO:0000734 - grain length
TO:0000449 - grain yield per plant
TO:0000196 - amylose content
TO:0000211 - gel consistency
TO:0000469 - days to maturity
TO:0000207 - plant height
TO:0000137 - days to heading
TO:0002616 - flowering time
TO:0002759 - grain number
TO:0000557 - secondary branch number
TO:0000352 - plant dry weight
TO:0000397 - grain size
TO:0000396 - grain yield
TO:0000162 - seed quality
TO:0000266 - chalky endosperm
TO:0002675 - gibberellic acid content
TO:0000050 - inflorescence branching
 PO:0001083 - inflorescence development stage
Os07g0261200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g15770.1
GIF1 gif1
CIN2
OsCIN2
OsGIF1
WB1
OsWB1
GIF1/OsCIN2
 GRAIN INCOMPLETE FILLING 1 grain incomplete filling 1
"Beta-fructofuranosidase
insoluble isoenzyme 2"
Sucrose hydrolase 2
Invertase 2
Cell wall beta-fructosidase 2
cell-wall invertase 2
White Belly 1
 4 Seed - Morphological traits
Character as QTL - Grain quality
Seed - Physiological traits - Taste
Tolerance and resistance - Stress tolerance
Seed - Physiological traits - Storage substances
Seed - Morphological traits - Endosperm
Character as QTL - Yield and productivity
 GO:0005987 - sucrose catabolic process
GO:0016787 - hydrolase activity
GO:0048046 - apoplast
GO:0051707 - response to other organism
GO:0009960 - endosperm development
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0004564 - beta-fructofuranosidase activity
GO:0004575 - sucrose alpha-glucosidase activity
GO:0005618 - cell wall
GO:0005975 - carbohydrate metabolic process
GO:0005986 - sucrose biosynthetic process
 TO:0000391 - seed size
TO:0000300 - glucose content
TO:0000447 - filled grain number
TO:0000311 - invertase activity
TO:0000456 - spikelet number
TO:0000382 - 1000-seed weight
TO:0000734 - grain length
TO:0000590 - grain weight
TO:0000328 - sucrose content
TO:0002661 - seed maturation
TO:0000455 - seed set percent
TO:0000487 - endosperm color
TO:0000196 - amylose content
TO:0000397 - grain size
TO:0000575 - endosperm related trait
TO:0000266 - chalky endosperm
TO:0000162 - seed quality
TO:0000696 - starch content
TO:0000304 - seed thickness
TO:0000592 - 1000-dehulled grain weight
TO:0000149 - seed width
TO:0000396 - grain yield
TO:0006005 - fructose content
TO:0000221 - glume color
TO:0000097 - amylopectin content
TO:0000146 - seed length
TO:0002656 - starch grain shape
 PO:0006326 - inflorescence internode
PO:0009089 - endosperm
PO:0005019 - carpel vascular system
PO:0007633 - endosperm development stage
PO:0000025 - root tip
PO:0009084 - pericarp
Os04g0413500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g33740.1
YUCCA9 OsYUCCA9
OsYUC9
YUC9
 YUCCA-LIKE GENE 9 (YUCCA-like gene)
 1 Biochemical character
Seed - Morphological traits - Embryo
Seed - Morphological traits - Endosperm
Seed - Physiological traits - Storage substances
 GO:0010262 - somatic embryogenesis
GO:0009851 - auxin biosynthetic process
GO:0048316 - seed development
GO:0004499 - flavin-containing monooxygenase activity
 TO:0000653 - seed development trait
TO:0002672 - auxin content
TO:0000266 - chalky endosperm
 PO:0000423 - plant zygote
PO:0009009 - plant embryo
PO:0009089 - endosperm
PO:0009006 - shoot system
PO:0009005 - root
PO:0009047 - stem
PO:0009049 - inflorescence
PO:0001170 - seed development stage
Os01g0273800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g16714.1
BAD1 Badh1
badh1
BAD1
BADH1
OsBADH1
BADH
OsALDH10A5
ALDH10A5
 BETAINE ALDEHYDE DEHYDROGENASE 1 betaine aldehyde dehydrogenase 1
Aldehyde dehydrogenase 10A5
 4 Tolerance and resistance - Stress tolerance
Biochemical character
Seed - Physiological traits - Taste
 GO:0010037 - response to carbon dioxide
GO:0009414 - response to water deprivation
GO:0008802 - betaine-aldehyde dehydrogenase activity
GO:0009651 - response to salt stress
GO:0010728 - regulation of hydrogen peroxide biosynthetic process
GO:0009413 - response to flooding
GO:0009416 - response to light stimulus
GO:0009408 - response to heat
GO:0009409 - response to cold
GO:0005618 - cell wall
GO:0005777 - peroxisome
GO:0019285 - glycine betaine biosynthetic process from choline
 TO:0006001 - salt tolerance
TO:0000286 - submergence sensitivity
TO:0000087 - aroma
TO:0000276 - drought tolerance
TO:0000259 - heat tolerance
TO:0000075 - light sensitivity
TO:0000303 - cold tolerance
 Os04g0464200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g39020.1
PT4 OsPT4
PHT1-4
OsPht1;4
PHT1-2
PHT1;4
OsPHT1;4
 PHOSPHATE TRANSPORTER 4 Probable inorganic phosphate transporter 1-4
Plant Phosphate Transporter 1;4
 4 Biochemical character
Seed - Physiological traits - Dormancy
Tolerance and resistance - Stress tolerance
Seed - Morphological traits - Embryo
 GO:0016036 - cellular response to phosphate starvation
GO:0005315 - inorganic phosphate transmembrane transporter activity
GO:0016020 - membrane
GO:0046688 - response to copper ion
GO:0001887 - selenium metabolic process
GO:0042594 - response to starvation
GO:0005886 - plasma membrane
GO:0009790 - embryonic development
GO:0016021 - integral to membrane
GO:0055085 - transmembrane transport
GO:0006817 - phosphate transport
GO:0009845 - seed germination
GO:0015293 - symporter activity
GO:0046685 - response to arsenic
GO:0009737 - response to abscisic acid stimulus
GO:0009733 - response to auxin stimulus
GO:0009739 - response to gibberellin stimulus
GO:0009609 - response to symbiotic bacterium
GO:0009735 - response to cytokinin stimulus
GO:0010269 - response to selenium ion
 TO:0000021 - copper sensitivity
TO:0000102 - phosphorus sensitivity
TO:0000167 - cytokinin sensitivity
TO:0000166 - gibberellic acid sensitivity
TO:0000615 - abscisic acid sensitivity
TO:0000163 - auxin sensitivity
 PO:0009009 - plant embryo
PO:0020103 - flag leaf
PO:0007057 - 0 seed germination stage
PO:0007632 - seed maturation stage
PO:0007633 - endosperm development stage
PO:0007631 - plant embryo stage
PO:0001170 - seed development stage
Os04g0186400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g10750.4
LOC_Os04g10750.1
LOC_Os04g10750.2
LOC_Os04g10750.3
GER5 OsGLP1
GLP1
GER1
GLP110
OsGER1
OsGER5
OsGLP8-14
GLP8-14
OsCDP8.14
CDP8.14
 GERMIN-LIKE PROTEIN 5 Germin-like protein 8-14
Germin-like protein 5
Germin-like protein 1
Germin protein type 1
germin-like protein1
cupin domain protein 8.14
 8 Vegetative organ - Leaf
Seed - Physiological traits - Storage substances
Tolerance and resistance - Stress tolerance
Vegetative organ - Root
Reproductive organ - panicle
Vegetative organ - Culm
Tolerance and resistance - Disease resistance
 GO:0010224 - response to UV-B
GO:0051555 - flavonol biosynthetic process
GO:0005829 - cytosol
GO:0010229 - inflorescence development
GO:0010109 - regulation of photosynthesis
GO:0051553 - flavone biosynthetic process
GO:0009812 - flavonoid metabolic process
GO:0010941 - regulation of cell death
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0030145 - manganese ion binding
GO:0045735 - nutrient reservoir activity
GO:0048046 - apoplast
GO:0009409 - response to cold
 TO:0001027 - net photosynthetic rate
TO:0000621 - inflorescence development trait
TO:0000601 - UV-B light sensitivity
TO:0000605 - hydrogen peroxide content
TO:0000207 - plant height
TO:0000303 - cold tolerance
TO:0000063 - mimic response
TO:0000206 - leaf angle
TO:0000227 - root length
 PO:0020104 - leaf sheath
PO:0001083 - inflorescence development stage
Os08g0460000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g35760.1
GLP12-1 OsGLP12-1
OsCDP12.1
CDP12.1
 GERMIN-LIKE PROTEIN 12-1 Germin-like protein 12-1
cupin domain protein 12.1
 12 Tolerance and resistance - Disease resistance
Seed - Physiological traits - Storage substances
 GO:0048046 - apoplast
GO:0050832 - defense response to fungus
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0030145 - manganese ion binding
GO:0045735 - nutrient reservoir activity
 TO:0000074 - blast disease
 Os12g0154700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os12g05840.1
GLP12-2 OsGLP12-2
OsCDP12.2
CDP12.2
 GERMIN-LIKE PROTEIN 12-2 Germin-like protein 12-2
cupin domain protein 12.2
 12 Tolerance and resistance - Disease resistance
Seed - Physiological traits - Storage substances
 GO:0050832 - defense response to fungus
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0030145 - manganese ion binding
GO:0045735 - nutrient reservoir activity
GO:0048046 - apoplast
 TO:0000477 - panicle blast disease resistance
 Os12g0154800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os12g05860.1
GLP12-3 OsGLP12-3
OsCDP12.3
CDP12.3
 GERMIN-LIKE PROTEIN 12-3 cupin domain protein 12.3
 12 Seed - Physiological traits - Storage substances
Tolerance and resistance - Stress tolerance
 GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0009269 - response to desiccation
GO:0048046 - apoplast
GO:0009737 - response to abscisic acid stimulus
GO:0009414 - response to water deprivation
GO:0046686 - response to cadmium ion
GO:0009413 - response to flooding
GO:0009651 - response to salt stress
GO:0009753 - response to jasmonic acid stimulus
GO:0045735 - nutrient reservoir activity
GO:0030145 - manganese ion binding
GO:0006970 - response to osmotic stress
 TO:0000276 - drought tolerance
TO:0000114 - flooding related trait
TO:0006001 - salt tolerance
TO:0000172 - jasmonic acid sensitivity
TO:0000095 - osmotic response sensitivity
TO:0000615 - abscisic acid sensitivity
 Os12g0154900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os12g05870.1
GLP8-11 OsGLP8-11
RGLP1
OsRGLP1
OsCDP8.11
CDP8.11
 GERMIN-LIKE PROTEIN 8-11 Germin-like protein 8-11
cupin domain protein 8.11
 8 Tolerance and resistance - Stress tolerance
Tolerance and resistance
Seed - Physiological traits - Storage substances
Tolerance and resistance - Disease resistance
 GO:0046688 - response to copper ion
GO:0005618 - cell wall
GO:0009414 - response to water deprivation
GO:0009651 - response to salt stress
GO:0050832 - defense response to fungus
GO:0002242 - defense response to parasitic plant
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0030145 - manganese ion binding
GO:0045735 - nutrient reservoir activity
GO:0048046 - apoplast
GO:0009723 - response to ethylene stimulus
GO:0030912 - response to deep water
GO:0046686 - response to cadmium ion
 TO:0000444 - parasitic weed
TO:0000074 - blast disease
TO:0000286 - submergence sensitivity
TO:0000173 - ethylene sensitivity
TO:0006001 - salt tolerance
TO:0000276 - drought tolerance
TO:0000021 - copper sensitivity
 PO:0009010 - seed
Os08g0190100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g09080.2
LOC_Os08g09080.1
GLP8-12 OsGLP8-12
OsCDP8.12
CDP8.12
 GERMIN-LIKE PROTEIN 8-12 Germin-like protein 8-12
cupin domain protein 8.12
 8 Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Seed - Physiological traits - Storage substances
 GO:0009651 - response to salt stress
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0030145 - manganese ion binding
GO:0045735 - nutrient reservoir activity
GO:0009414 - response to water deprivation
GO:0048046 - apoplast
GO:0009723 - response to ethylene stimulus
GO:0050832 - defense response to fungus
GO:0009409 - response to cold
 TO:0000074 - blast disease
TO:0000276 - drought tolerance
TO:0000303 - cold tolerance
TO:0000173 - ethylene sensitivity
TO:0006001 - salt tolerance
 Os08g0231400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g13440.3
LOC_Os08g13440.2
LOC_Os08g13440.1
GER3 OsGLP8-2
GLP8-2
OsGER3
GLP16
OsEnS-117
OsCDP8.2
CDP8.2
 GERMIN-LIKE PROTEIN 3 Germin-like protein 8-2
Germin-like protein 3
Germin-like protein 16
endosperm-specific gene 117
cupin domain protein 8.2
 8 Tolerance and resistance - Stress tolerance
Seed - Physiological traits - Storage substances
Tolerance and resistance - Disease resistance
Seed
 GO:0046686 - response to cadmium ion
GO:0006979 - response to oxidative stress
GO:0048316 - seed development
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0030145 - manganese ion binding
GO:0045735 - nutrient reservoir activity
GO:0048046 - apoplast
GO:0046688 - response to copper ion
 TO:0000143 - relative biomass
TO:0000653 - seed development trait
TO:0000731 - lignin content
TO:0000605 - hydrogen peroxide content
TO:0000021 - copper sensitivity
TO:0001034 - relative plant height
TO:0000516 - relative root length
TO:0002657 - oxidative stress
TO:0001016 - relative chlorophyll content
 PO:0009010 - seed
PO:0001170 - seed development stage
Os08g0189100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g08960.1
GLP8-5 OsGLP8-5
OsCDP8.5
CDP8.5
 GERMIN-LIKE PROTEIN 8-5 Germin-like protein 8-5
cupin domain protein 8.5
 8 Seed - Physiological traits - Storage substances
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
 GO:0045735 - nutrient reservoir activity
GO:0048046 - apoplast
GO:0030145 - manganese ion binding
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0046688 - response to copper ion
GO:0046686 - response to cadmium ion
 TO:0000021 - copper sensitivity
 Os08g0189400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g08990.1
GLP8-6 OsGLP8-6
OsCDP8.6
CDP8.6
 GERMIN-LIKE PROTEIN 8-6 Germin-like protein 8-6
cupin domain protein 8.6
 8 Seed - Physiological traits - Storage substances
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
 GO:0048046 - apoplast
GO:0046688 - response to copper ion
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0030145 - manganese ion binding
GO:0045735 - nutrient reservoir activity
 TO:0000021 - copper sensitivity
 Os08g0189500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g09000.1
GER6 OsGLP8-7
GLP8-7
OsGER6
OsRGLP2
RGLP2
OsCDP8.7
CDP8.7
 GERMIN-LIKE PROTEIN 6 Germin-like protein 8-7
Germin-like protein 6
germin-like protein gene 2
Root GLP 2
root GLP2
root Germin-like protein 2
cupin domain protein 8.7
 8 Tolerance and resistance
Tolerance and resistance - Stress tolerance
Seed - Physiological traits - Storage substances
Tolerance and resistance - Disease resistance
 GO:0046688 - response to copper ion
GO:0009414 - response to water deprivation
GO:0009611 - response to wounding
GO:0009651 - response to salt stress
GO:0010729 - positive regulation of hydrogen peroxide biosynthetic process
GO:0050832 - defense response to fungus
GO:0005618 - cell wall
GO:0002242 - defense response to parasitic plant
GO:0042742 - defense response to bacterium
GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0030145 - manganese ion binding
GO:0045735 - nutrient reservoir activity
GO:0048046 - apoplast
GO:0009409 - response to cold
GO:0034059 - response to anoxia
GO:0002213 - defense response to insect
GO:0046686 - response to cadmium ion
 TO:0000015 - oxygen sensitivity
TO:0000168 - abiotic stress trait
TO:0000021 - copper sensitivity
TO:0000439 - fungal disease resistance
TO:0000315 - bacterial disease resistance
TO:0006001 - salt tolerance
TO:0000424 - brown planthopper resistance
TO:0000303 - cold tolerance
TO:0000605 - hydrogen peroxide content
TO:0000074 - blast disease
TO:0000444 - parasitic weed
TO:0000188 - drought sensitivity
TO:0000249 - leaf senescence
TO:0000112 - disease resistance
TO:0000401 - plant growth hormone sensitivity
TO:0000075 - light sensitivity
TO:0000167 - cytokinin sensitivity
 PO:0009010 - seed
Os08g0189600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g09010.1
GLP8-8 OsGLP8-8
OsCDP8.8
CDP8.8
 GERMIN-LIKE PROTEIN 8-8 Germin-like protein 8-8
cupin domain protein 8.8
 8 Seed - Physiological traits - Storage substances
Tolerance and resistance - Disease resistance
 GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0030145 - manganese ion binding
GO:0045735 - nutrient reservoir activity
GO:0048046 - apoplast
 Os08g0189700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g09020.1
GLP8-9 OsGLP8-9
OsCDP8.9
CDP8.9
 GERMIN-LIKE PROTEIN 8-9 Germin-like protein 8-9
cupin domain protein 8.9
 8 Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
Seed - Physiological traits - Storage substances
 GO:0016023 - cytoplasmic membrane-bounded vesicle
GO:0030145 - manganese ion binding
GO:0045735 - nutrient reservoir activity
GO:0046688 - response to copper ion
GO:0048046 - apoplast
 TO:0000021 - copper sensitivity
 Os08g0189850 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g09040.1
RL9 rl9
SLL1/RL9
SLL1
OsSLL1
OsADD1
ADD1
AH2
OsAH2
CL1
OsCL1
OsKAN1
KAN1
 ROLLED LEAF 9 SHALLOT-LIKE1
SHALLOT-LIKE 1
ROLLED LEAF9
anther dehiscence defected 1
abnormal hull 2
curling leaf 1
KANADI1
OsKANADI1
 9 Seed - Morphological traits - Grain shape
Seed - Morphological traits
Vegetative organ - Root
Reproductive organ - Inflorescence
Reproductive organ - panicle
Character as QTL - Grain quality
Vegetative organ - Culm
Vegetative organ - Leaf
Coloration - Chlorophyll
Character as QTL - Yield and productivity
Character as QTL - Plant growth activity
Reproductive organ - Spikelet, flower, glume, awn
Other
 GO:0042127 - regulation of cell proliferation
GO:0045892 - negative regulation of transcription, DNA-dependent
GO:0048366 - leaf development
GO:0005634 - nucleus
GO:0048437 - floral organ development
GO:0003677 - DNA binding
GO:0003682 - chromatin binding
GO:0009739 - response to gibberellin stimulus
GO:0001558 - regulation of cell growth
GO:0030154 - cell differentiation
GO:0048653 - anther development
GO:0009555 - pollen development
GO:0010229 - inflorescence development
GO:0010088 - phloem development
GO:0010158 - abaxial cell fate specification
GO:0006355 - regulation of transcription, DNA-dependent
GO:0009685 - gibberellin metabolic process
GO:0006351 - transcription, DNA-dependent
GO:0009957 - epidermal cell fate specification
GO:0045487 - gibberellin catabolic process
GO:0080006 - internode patterning
GO:0051510 - regulation of unidimensional cell growth
GO:0048316 - seed development
GO:0012501 - programmed cell death
GO:0048364 - root development
 TO:0000152 - panicle number
TO:0001027 - net photosynthetic rate
TO:0000295 - chlorophyll-b content
TO:0000162 - seed quality
TO:0002757 - flag leaf length
TO:0000207 - plant height
TO:0000396 - grain yield
TO:0000370 - leaf width
TO:0000135 - leaf length
TO:0000326 - leaf color
TO:0000382 - 1000-seed weight
TO:0002681 - leaf curling
TO:0000316 - photosynthetic ability
TO:0000462 - gelatinization temperature
TO:0000474 - glume opening
TO:0000166 - gibberellic acid sensitivity
TO:0002675 - gibberellic acid content
TO:0000657 - spikelet anatomy and morphology trait
TO:0000655 - leaf development trait
TO:0000019 - seedling height
TO:0000165 - panicle exsertion
TO:0000495 - chlorophyll content
TO:0000145 - internode length
TO:0000449 - grain yield per plant
TO:0000455 - seed set percent
TO:0000040 - panicle length
TO:0000079 - lemma and palea anatomy and morphology trait
TO:0000598 - protein content
TO:0000391 - seed size
TO:0000421 - pollen fertility
TO:0002689 - leaf sheath length
TO:0000227 - root length
TO:0001012 - lateral root length
TO:0000587 - endosperm quality
TO:0006022 - floral organ development trait
TO:0000085 - leaf rolling
TO:0000053 - pollen sterility
TO:0000072 - awn length
TO:0000397 - grain size
TO:0000653 - seed development trait
TO:0000656 - root development trait
TO:0001006 - adventitious root number
TO:0000196 - amylose content
TO:0000734 - grain length
TO:0000211 - gel consistency
 PO:0020104 - leaf sheath
PO:0006019 - leaf abaxial epidermis
PO:0020142 - stem internode
PO:0001007 - pollen development stage
PO:0025426 - phloem development stage
PO:0001170 - seed development stage
PO:0009051 - spikelet
PO:0025585 - floral organ formation stage
PO:0000017 - vascular leaf primordium
PO:0020148 - shoot apical meristem
PO:0009005 - root
PO:0007520 - root development stage
PO:0009049 - inflorescence
PO:0020141 - stem node
PO:0009047 - stem
PO:0001050 - leaf development stage
PO:0001004 - anther development stage
PO:0000293 - guard cell
PO:0025034 - leaf
Os09g0395300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os09g23200.1
AGPL2 OsAGPL2
osagpl2
APL2
OsAPL2
AGPiso
sh2
Sh2
GIF2
GAS1
 ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 2 sativa ADP-glucose pyrophosphorylase large subunit 2
ADP-glucose Pyrophosphorylase large subunit 2
AGPase large subunit 2
AGPase large unit 2
ADP-glucose pyrophosphorylase subunit SH2
GRAIN INCOMPLETE FILLING 2
 1 Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Seed - Physiological traits - Storage substances
Seed - Morphological traits - Endosperm
Biochemical character
 GO:0008878 - glucose-1-phosphate adenylyltransferase activity
GO:0009058 - biosynthetic process
GO:0009269 - response to desiccation
GO:0009536 - plastid
GO:0019252 - starch biosynthetic process
GO:0016779 - nucleotidyltransferase activity
GO:0005978 - glycogen biosynthetic process
GO:0048316 - seed development
GO:0010431 - seed maturation
GO:0010581 - regulation of starch biosynthetic process
GO:0010035 - response to inorganic substance
GO:0009651 - response to salt stress
GO:0005829 - cytosol
 TO:0000394 - drought related trait
TO:0000104 - floury endosperm
TO:0000480 - nutrient sensitivity
TO:0000382 - 1000-seed weight
TO:0000590 - grain weight
TO:0006001 - salt tolerance
TO:0000653 - seed development trait
TO:0002661 - seed maturation
TO:0000100 - shrunken endosperm
TO:0000396 - grain yield
TO:0000162 - seed quality
TO:0000696 - starch content
 PO:0007632 - seed maturation stage
PO:0009001 - fruit
PO:0001170 - seed development stage
PO:0007022 - seed imbibition stage
PO:0009010 - seed
PO:0009089 - endosperm
Os01g0633100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g44220.7
LOC_Os01g44220.6
LOC_Os01g44220.5
LOC_Os01g44220.1
LOC_Os01g44220.2
LOC_Os01g44220.3
LOC_Os01g44220.4
AGPL4 OsAGPL4
APL4
OsAPL4
OsSTA193
 ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 4 sativa ADP-glucose pyrophosphorylase large subunit 4
ADP-glucose Pyrophosphorylase large subunit 4
AGPase large subunit 4
AGPase large unit 4
 7 Seed - Morphological traits - Endosperm
Reproductive organ - Spikelet, flower, glume, awn
Biochemical character
Seed - Physiological traits - Storage substances
 GO:0009536 - plastid
GO:0009058 - biosynthetic process
GO:0016779 - nucleotidyltransferase activity
GO:0019252 - starch biosynthetic process
GO:0008878 - glucose-1-phosphate adenylyltransferase activity
 TO:0000696 - starch content
TO:0000106 - male sterility type
 PO:0009066 - anther
PO:0009089 - endosperm
Os07g0243200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g13980.1
AGPS1 OsAGPS1
APS1
OsAPS1
AGPsma
 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1 ADP-glucose pyrophosphorylase small subunit 1
ADP-glucose Pyrophosphorylase small subunit 1
AGPase small subunit 1
Adenosine diphosphate glucose pyrophosphorylase
adenosine diphosphoglucose pyrophosphorylase
ADP-glucose pyrophosphorylase small unit 1
AGPase S1
glucose-1-phosphate adenylyl transferase large subunit
ADP-Glc pyrophosphorylase small subunit 1
AGPase small subunit 1
 9 Tolerance and resistance - Disease resistance
Biochemical character
Seed - Physiological traits - Taste
Tolerance and resistance - Stress tolerance
 GO:0009408 - response to heat
GO:0009501 - amyloplast
GO:0009536 - plastid
GO:0019252 - starch biosynthetic process
GO:0009413 - response to flooding
GO:0009058 - biosynthetic process
GO:0042742 - defense response to bacterium
GO:0016779 - nucleotidyltransferase activity
GO:0008878 - glucose-1-phosphate adenylyltransferase activity
 TO:0000286 - submergence sensitivity
TO:0000266 - chalky endosperm
TO:0000203 - bacterial leaf streak disease resistance
TO:0000259 - heat tolerance
 PO:0009010 - seed
PO:0004006 - mesophyll cell
PO:0009047 - stem
PO:0025034 - leaf
PO:0007632 - seed maturation stage
PO:0020104 - leaf sheath
PO:0009066 - anther
PO:0009089 - endosperm
Os09g0298200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os09g12660.1
LOC_Os09g12660.2
AGPS2 OsAGPS2a
AGPS2A
AGPS2B
OsAGPS2
osagps2
APS2
APS2a
APS2b
AGPS2a
APGS2b
OsAGPS2b
AGPP
GAS8
OsAPS2
OsAPS2a
OsAPS2b
 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 2 sativa ADP-glucose pyrophosphorylase small subunit 2a
sativa ADP-glucose pyrophosphorylase small subunit 2
ADP-glucose Pyrophosphorylase small subunit 2
AGPase small subunit 2
ADP-glucose pyrophosphorylase small subunit 2a
ADP-glucose pyrophosphorylase 51kD subunit
ADP-glucose pyrophosphorylase small unit 2
ADP-glucose pyrophosphorylase small subunit 2b
 8 Tolerance and resistance - Stress tolerance
Biochemical character
Seed - Morphological traits - Endosperm
Character as QTL - Yield and productivity
Seed - Physiological traits - Storage substances
 GO:0009408 - response to heat
GO:0010035 - response to inorganic substance
GO:0009269 - response to desiccation
GO:0005829 - cytosol
GO:0008878 - glucose-1-phosphate adenylyltransferase activity
GO:0019252 - starch biosynthetic process
GO:0005524 - ATP binding
GO:0009501 - amyloplast
GO:0009507 - chloroplast
GO:0009536 - plastid
GO:0009415 - response to water
GO:0005978 - glycogen biosynthetic process
GO:0000003 - reproduction
GO:0009791 - post-embryonic development
GO:0009651 - response to salt stress
GO:0005982 - starch metabolic process
 TO:0000480 - nutrient sensitivity
TO:0000696 - starch content
TO:0000237 - water stress trait
TO:0006001 - salt tolerance
TO:0000259 - heat tolerance
TO:0000100 - shrunken endosperm
TO:0002661 - seed maturation
TO:0000394 - drought related trait
TO:0000382 - 1000-seed weight
TO:0000011 - nitrogen sensitivity
TO:0000333 - sugar content
 PO:0009010 - seed
PO:0025034 - leaf
PO:0009089 - endosperm
PO:0007632 - seed maturation stage
PO:0007022 - seed imbibition stage
Os08g0345800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g25734.2
LOC_Os08g25734.1
ABI5 OsABI5
OsbZIP10
OsABF1
OREB1
OsABI5-1
OsABI5-2
OsOREB1
OREB1
 ABA INSENSITIVE 5 ABA Insensitive 5
bZIP-type transcription factor ABI5
bZIP transcription factors OsABI5
bZIP transcription factor 10
Abscisic acid insensitive 5
 1 Seed - Physiological traits - Storage substances
Character as QTL - Yield and productivity
Seed - Morphological traits - Grain shape
Character as QTL - Grain quality
Character as QTL - Germination
Seed - Physiological traits - Dormancy
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Tolerance and resistance - Stress tolerance
 GO:0005985 - sucrose metabolic process
GO:0009733 - response to auxin stimulus
GO:0005982 - starch metabolic process
GO:0010581 - regulation of starch biosynthetic process
GO:0009753 - response to jasmonic acid stimulus
GO:0009739 - response to gibberellin stimulus
GO:0051171 - regulation of nitrogen compound metabolic process
GO:0045454 - cell redox homeostasis
GO:0003700 - transcription factor activity
GO:0009738 - abscisic acid mediated signaling
GO:0045893 - positive regulation of transcription, DNA-dependent
GO:0009651 - response to salt stress
GO:0009737 - response to abscisic acid stimulus
GO:0009787 - regulation of abscisic acid mediated signaling
GO:0010187 - negative regulation of seed germination
GO:0042744 - hydrogen peroxide catabolic process
GO:0019740 - nitrogen utilization
GO:0009845 - seed germination
GO:0005634 - nucleus
GO:0031667 - response to nutrient levels
GO:0046345 - abscisic acid catabolic process
GO:0010162 - seed dormancy
GO:0009409 - response to cold
GO:0009414 - response to water deprivation
GO:0006995 - cellular response to nitrogen starvation
GO:0010152 - pollen maturation
GO:0043565 - sequence-specific DNA binding
GO:0045449 - regulation of transcription
GO:0010029 - regulation of seed germination
GO:0010372 - positive regulation of gibberellin biosynthetic process
GO:0042594 - response to starvation
GO:0030187 - melatonin biosynthetic process
GO:0009725 - response to hormone stimulus
 TO:0000166 - gibberellic acid sensitivity
TO:0000397 - grain size
TO:0000253 - seed dormancy
TO:0000276 - drought tolerance
TO:0000483 - germinability at low temperature
TO:0000172 - jasmonic acid sensitivity
TO:0000300 - glucose content
TO:0000455 - seed set percent
TO:0000303 - cold tolerance
TO:0000919 - grain weight
TO:0000250 - vigor related trait
TO:0000696 - starch content
TO:0000040 - panicle length
TO:0000162 - seed quality
TO:0000420 - fertility related trait
TO:0000462 - gelatinization temperature
TO:0000211 - gel consistency
TO:0000196 - amylose content
TO:0000163 - auxin sensitivity
TO:0000396 - grain yield
TO:0002667 - abscisic acid content
TO:0002672 - auxin content
TO:0000615 - abscisic acid sensitivity
TO:0000097 - amylopectin content
TO:0000011 - nitrogen sensitivity
TO:0000401 - plant growth hormone sensitivity
TO:0000604 - fat and essential oil content
TO:0000382 - 1000-seed weight
TO:0000430 - germination rate
TO:0002658 - starch grain synthesis
TO:0002656 - starch grain shape
TO:0000605 - hydrogen peroxide content
TO:0000266 - chalky endosperm
TO:0000134 - alkali digestion
TO:0000590 - grain weight
TO:0000399 - grain thickness
TO:0000429 - salt sensitivity
TO:0000487 - endosperm color
TO:0000053 - pollen sterility
TO:0002653 - endosperm storage protein content
 PO:0020091 - obsolete microgametophyte
PO:0025500 - whole plant fruit development stage
PO:0009049 - inflorescence
PO:0009010 - seed
PO:0007057 - 0 seed germination stage
Os01g0859300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g64000.1
LOC_Os01g64000.2
LOC_Os01g64000.3
AGO17 OsAGO17
 ARGONAUTE 17 Protein argonaute 17
 2 Seed - Morphological traits
Seed - Physiological traits - Storage substances
Character as QTL - Yield and productivity
Other
Vegetative organ - Culm
Reproductive organ - panicle
 GO:0003676 - nucleic acid binding
GO:0005739 - mitochondrion
GO:0031047 - gene silencing by RNA
GO:0051512 - positive regulation of unidimensional cell growth
GO:0005634 - nucleus
 TO:0000456 - spikelet number
TO:0000592 - 1000-dehulled grain weight
TO:0000734 - grain length
TO:0000590 - grain weight
TO:0000397 - grain size
TO:0000449 - grain yield per plant
TO:0000391 - seed size
TO:0000657 - spikelet anatomy and morphology trait
TO:0000576 - stem length
TO:0000051 - stem strength
TO:0000339 - stem thickness
TO:0000145 - internode length
TO:0000207 - plant height
TO:0000266 - chalky endosperm
TO:0000040 - panicle length
TO:0000455 - seed set percent
 PO:0020141 - stem node
Os02g0169400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g07310.1
AGO1C OsAGO1c
OsAGO1
AGO1
AGO1c
 ARGONAUTE 1C Protein argonaute 1C
Protein argonaute 1
argonaute1
 2 Seed - Physiological traits
Other
 GO:0003676 - nucleic acid binding
GO:0031047 - gene silencing by RNA
 TO:0000345 - seed viability
 Os02g0831600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g58490.1
AGO2 OsAGO2
 ARGONAUTE 2 sativa Argonaute 2
Protein argonaute 2
ARGONAUTE2
 4 Character as QTL - Yield and productivity
Other
Tolerance and resistance - Stress tolerance
Seed - Morphological traits - Grain shape
Tolerance and resistance - Disease resistance
Vegetative organ - Leaf
Coloration - Chlorophyll
 GO:0006306 - DNA methylation
GO:0009658 - chloroplast organization
GO:0043067 - regulation of programmed cell death
GO:0009409 - response to cold
GO:0003676 - nucleic acid binding
GO:0010150 - leaf senescence
GO:0031047 - gene silencing by RNA
GO:0046466 - membrane lipid catabolic process
GO:0009737 - response to abscisic acid stimulus
GO:0009690 - cytokinin metabolic process
GO:0048316 - seed development
GO:0009651 - response to salt stress
GO:0050687 - negative regulation of defense response to virus
GO:0051607 - defense response to virus
 TO:0002660 - cytokinin content
TO:0000020 - black streak dwarf virus resistance
TO:0002715 - chloroplast development trait
TO:0000396 - grain yield
TO:0000449 - grain yield per plant
TO:0000734 - grain length
TO:0000269 - 100-seed weight
TO:0000455 - seed set percent
TO:0000326 - leaf color
TO:0000605 - hydrogen peroxide content
TO:0000495 - chlorophyll content
TO:0000615 - abscisic acid sensitivity
TO:0000303 - cold tolerance
TO:0001015 - photosynthetic rate
TO:0000316 - photosynthetic ability
TO:0006001 - salt tolerance
TO:0000249 - leaf senescence
 Os04g0615700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g52540.1
AGPL1 OsAGPL1
OsAPL1
APL1
OsAGPL3
AGPL3
OsAGPSL3
AGPSL3
 ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1 sativa ADP-glucose pyrophosphorylase large subunit 1
ADP-glucose Pyrophosphorylase large subunit 1
AGPase large subunit 1
ADP-glucose pyrophosphorylase large subunit 3
AGPase large unit 3
 3 Vegetative organ - Culm
Seed - Morphological traits - Endosperm
Seed - Physiological traits - Storage substances
Biochemical character
Tolerance and resistance - Stress tolerance
 GO:0005978 - glycogen biosynthetic process
GO:0008878 - glucose-1-phosphate adenylyltransferase activity
GO:0019252 - starch biosynthetic process
GO:0016779 - nucleotidyltransferase activity
GO:0009959 - negative gravitropism
GO:0009536 - plastid
GO:0009058 - biosynthetic process
GO:0009629 - response to gravity
 TO:0000696 - starch content
TO:0000567 - tiller angle
TO:0002693 - gravity response trait
 PO:0025034 - leaf
Os03g0735000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g52460.1
ANS ANS
OsANS1
ANS1
LDOX
LDOX1
OsLDOX
OsLDOX1
 ANTHOCYANIDIN SYNTHASE anthocyanidin synthase
leucoanthocyanidin dioxygenase
 1 Biochemical character
Coloration - Others
Seed - Morphological traits
Seed
Tolerance and resistance - Stress tolerance
Coloration - Anthocyanin
 GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0010023 - proanthocyanidin biosynthetic process
GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0050589 - leucocyanidin oxygenase activity
GO:0048316 - seed development
GO:0009753 - response to jasmonic acid stimulus
GO:0009409 - response to cold
GO:0009735 - response to cytokinin stimulus
GO:0009416 - response to light stimulus
GO:0009813 - flavonoid biosynthetic process
GO:0009718 - anthocyanin biosynthetic process
GO:0005506 - iron ion binding
GO:0009408 - response to heat
GO:0007033 - vacuole organization
GO:0009611 - response to wounding
 TO:0000653 - seed development trait
TO:0000168 - abiotic stress trait
TO:0000075 - light sensitivity
TO:0000167 - cytokinin sensitivity
TO:0000303 - cold tolerance
TO:0000259 - heat tolerance
TO:0000071 - anthocyanin content
TO:0000290 - flavonoid content
TO:0000707 - pericarp color
 PO:0009066 - anther
PO:0007010 - whole plant fruit ripening stage
PO:0001170 - seed development stage
Os01g0372500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g27490.1
DCL3B OsDCL3b
 DICER-LIKE 3B Endoribonuclease Dicer homolog 3b
Dicer-like protein 3b
 10 Biochemical character
Character as QTL - Yield and productivity
Seed - Physiological traits
Seed - Physiological traits - Storage substances
 GO:0006396 - RNA processing
GO:0008026 - ATP-dependent helicase activity
GO:0009536 - plastid
GO:0030145 - manganese ion binding
GO:0000287 - magnesium ion binding
GO:0005634 - nucleus
GO:0003725 - double-stranded RNA binding
GO:0004525 - ribonuclease III activity
GO:0005524 - ATP binding
GO:0000380 - alternative nuclear mRNA splicing, via spliceosome
GO:0031047 - gene silencing by RNA
 TO:0000421 - pollen fertility
TO:0000455 - seed set percent
TO:0000396 - grain yield
TO:0000162 - seed quality
TO:0000598 - protein content
TO:0000180 - spikelet fertility
TO:0002673 - amino acid content
 Os10g0485600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os10g34430.1
F3'H OsF3'H
OsCYP75B3
CYP75B3
OsF3'H10
F3'H10
OsCYP71P3
CYP71P3
 FLAVONOID 3'-HYDROXYLASE sativa flavonoid 3'-hydroxylase
Flavanone 3'-hydroxylase
P-450 75B3
Cytochrome P450 75B3
flavonoid 3'-monooxygenase
flavonoid 3'-hydroxylase 10
 10 Seed
Coloration - Anthocyanin
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Insect resistance
Seed - Morphological traits
Biochemical character
Tolerance and resistance - Disease resistance
 GO:0002213 - defense response to insect
GO:0004497 - monooxygenase activity
GO:0005506 - iron ion binding
GO:0009718 - anthocyanin biosynthetic process
GO:0005634 - nucleus
GO:0016020 - membrane
GO:0009408 - response to heat
GO:0009813 - flavonoid biosynthetic process
GO:0045486 - naringenin 3-dioxygenase activity
GO:0048316 - seed development
GO:0009753 - response to jasmonic acid stimulus
GO:0050832 - defense response to fungus
GO:0020037 - heme binding
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016021 - integral to membrane
 TO:0000653 - seed development trait
TO:0000259 - heat tolerance
TO:0000071 - anthocyanin content
TO:0000074 - blast disease
TO:0000172 - jasmonic acid sensitivity
TO:0000424 - brown planthopper resistance
 PO:0001170 - seed development stage
Os10g0320100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os10g17260.1
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