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Gene Ontology Plant Ontology Trait Ontology Trait Class

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Search Condition : Filter(traitClassFacetEn:051_Reproductive organ - Spikelet, flower, glume, awn)
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CGSNL
Gene
Symbol 		Gene symbol synonym(s) CGSNL Gene Name Gene name synonym(s) Chr. No. Trait Class Gene Ontology Trait Ontology Plant Ontology RAP ID MSU ID Mutant
Image
GH3-8 OsGH3-8
OsMGH3
OsGH3.8
GH3.8
OsGH3-2
 GRETCHEN HAGEN 3 GENE 8 Gretchen Hagen 3 protein 8
 7 Tolerance and resistance - Disease resistance
Biochemical character
Reproductive organ - Spikelet, flower, glume, awn
Vegetative organ - Culm
Character as QTL - Yield and productivity
Tolerance and resistance - Stress tolerance
 GO:0009863 - salicylic acid mediated signaling pathway
GO:0009867 - jasmonic acid mediated signaling pathway
GO:0009852 - auxin catabolic process
GO:0006955 - immune response
GO:0010279 - indole-3-acetic acid amido synthetase activity
GO:0016874 - ligase activity
GO:0009651 - response to salt stress
GO:0051607 - defense response to virus
GO:0009908 - flower development
 TO:0000622 - flower development trait
TO:0000172 - jasmonic acid sensitivity
TO:0000346 - tiller number
TO:0000020 - black streak dwarf virus resistance
TO:0000207 - plant height
TO:0000401 - plant growth hormone sensitivity
TO:0006001 - salt tolerance
TO:0002672 - auxin content
 PO:0009049 - inflorescence
PO:0007615 - flower development stage
PO:0008037 - seedling
PO:0009066 - anther
PO:0005052 - plant callus
PO:0009010 - seed
Os07g0592600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g40290.1
CIPK05 OsCIPK05
CIPK5
OsCIPK5
OsSTA7
OsSnRK3.2
SnRK3.2
 CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 5 CBL-interacting protein kinase 5
Sucrose nonfermenting-1-related protein kinase 3.2
 1 Reproductive organ - Spikelet, flower, glume, awn
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0042742 - defense response to bacterium
GO:0031348 - negative regulation of defense response
GO:0030145 - manganese ion binding
GO:0009409 - response to cold
GO:0007165 - signal transduction
GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
GO:0009413 - response to flooding
 TO:0000203 - bacterial leaf streak disease resistance
TO:0000114 - flooding related trait
TO:0000303 - cold tolerance
 PO:0009066 - anther
PO:0009049 - inflorescence
Os01g0206700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g10890.1
YUCCA4 OsYUCCA4
OsYUC4
YUC4
YUCCA6
OsYUCCA6
 YUCCA-LIKE GENE 4 (YUCCA-like gene)
 1 Tolerance and resistance - Disease resistance
Seed - Morphological traits - Embryo
Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
Biochemical character
 GO:0051707 - response to other organism
GO:0004499 - flavin-containing monooxygenase activity
GO:0009851 - auxin biosynthetic process
GO:0009737 - response to abscisic acid stimulus
GO:0048653 - anther development
GO:0009901 - anther dehiscence
GO:0042594 - response to starvation
GO:0009793 - embryonic development ending in seed dormancy
GO:0009408 - response to heat
GO:0051607 - defense response to virus
 TO:0002672 - auxin content
TO:0000189 - embryoless
TO:0000259 - heat tolerance
TO:0000620 - embryo development trait
TO:0000148 - viral disease resistance
TO:0000615 - abscisic acid sensitivity
TO:0000657 - spikelet anatomy and morphology trait
 PO:0007631 - plant embryo stage
PO:0001004 - anther development stage
PO:0001035 - G anther dehiscence stage
PO:0009066 - anther
Os01g0224700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g12490.1
TDR tdr
OsbHLH005
bHLH005
OsbHLH5
bhlh5
TDR1
OsTDR
OsTDR1
OsMYC5
MYC5
 TAPETUM DEGENERATION RETARDATION tapetum degeneration retardation
basic helix loop helix 5
basic/helix-loop-helix 5
Myelocytomatosis oncogene transcription factor 5
 2 Reproductive organ - Pollination, fertilization, fertility - Male sterility
Reproductive organ - Spikelet, flower, glume, awn
Tolerance and resistance - Stress tolerance
 GO:0009266 - response to temperature stimulus
GO:0046983 - protein dimerization activity
GO:0009555 - pollen development
GO:0003677 - DNA binding
GO:0005634 - nucleus
GO:0006355 - regulation of transcription, DNA-dependent
GO:0048657 - tapetal cell differentiation
GO:0030528 - transcription regulator activity
GO:0045449 - regulation of transcription
GO:0048653 - anther development
GO:0048658 - tapetal layer development
GO:0010208 - pollen wall assembly
GO:0010584 - pollen exine formation
GO:0003682 - chromatin binding
GO:0000978 - RNA polymerase II regulatory transcription factor site sequence-specific DNA binding
GO:0010234 - tapetal cell fate specification
GO:0048654 - anther morphogenesis
 TO:0000437 - male sterility
TO:0000432 - temperature response trait
TO:0000218 - pollen abortion type
 PO:0009071 - anther wall tapetum
PO:0001007 - pollen development stage
PO:0009066 - anther
PO:0009049 - inflorescence
PO:0001004 - anther development stage
Os02g0120500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g02820.1
YAB5 OsYAB5
OsYAB3
YAB3
TOB1
OsTOB1
 YABBY 5 Protein YABBY 5
TONGARI-BOUSHI1
TONGARI-BOUSHI 1
 4 Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
Other
Vegetative organ - Culm
Vegetative organ - Leaf
 GO:0009937 - regulation of gibberellic acid mediated signaling
GO:0009685 - gibberellin metabolic process
GO:0045487 - gibberellin catabolic process
GO:0009408 - response to heat
GO:0080006 - internode patterning
GO:0010073 - meristem maintenance
GO:0048437 - floral organ development
GO:0010229 - inflorescence development
GO:0005634 - nucleus
GO:0030154 - cell differentiation
GO:0046872 - metal ion binding
GO:0009739 - response to gibberellin stimulus
GO:0051510 - regulation of unidimensional cell growth
GO:0009908 - flower development
GO:0048366 - leaf development
 TO:0000207 - plant height
TO:0000166 - gibberellic acid sensitivity
TO:0000040 - panicle length
TO:0000165 - panicle exsertion
TO:0000019 - seedling height
TO:0000072 - awn length
TO:0002689 - leaf sheath length
TO:0000622 - flower development trait
TO:0000655 - leaf development trait
TO:0000259 - heat tolerance
TO:0000657 - spikelet anatomy and morphology trait
TO:0000145 - internode length
TO:0002600 - flower organ size
TO:0006038 - floral organ number
TO:0002675 - gibberellic acid content
TO:0000621 - inflorescence development trait
 PO:0025477 - floral organ primordium
PO:0025487 - bract primordium
PO:0001083 - inflorescence development stage
PO:0000017 - vascular leaf primordium
PO:0007615 - flower development stage
PO:0001050 - leaf development stage
PO:0025034 - leaf
PO:0020104 - leaf sheath
PO:0009051 - spikelet
Os04g0536300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g45330.1
CDPK2 OsCDPK2
OsCPK2
CPK2
 CALCIUM-DEPENDENT PROTEIN KINASE 2 calcium-dependent protein kinase
 1 Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
Reproductive organ - Inflorescence
Biochemical character
 GO:0005509 - calcium ion binding
GO:0005524 - ATP binding
GO:0005737 - cytoplasm
GO:0010857 - calcium-dependent protein kinase activity
GO:0004674 - protein serine/threonine kinase activity
GO:0005886 - plasma membrane
GO:0080092 - regulation of pollen tube growth
GO:0009414 - response to water deprivation
 TO:0000276 - drought tolerance
 PO:0009049 - inflorescence
PO:0009029 - stamen
Os01g0808400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g59360.1
CDPK14 OsCDPK14
OsCPK14
CPK14
 CALCIUM-DEPENDENT PROTEIN KINASE 14 calcium-dependent protein kinase
 5 Biochemical character
Reproductive organ - Spikelet, flower, glume, awn
Reproductive organ - Inflorescence
Tolerance and resistance - Stress tolerance
 GO:0010857 - calcium-dependent protein kinase activity
GO:0009414 - response to water deprivation
 TO:0000276 - drought tolerance
 PO:0009049 - inflorescence
PO:0009029 - stamen
Os05g0491900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os05g41270.1
CDPK22 OsCDPK22
OsCPK22
CPK22
 CALCIUM-DEPENDENT PROTEIN KINASE 22 calcium-dependent protein kinase
 9 Reproductive organ - Inflorescence
Biochemical character
Reproductive organ - Spikelet, flower, glume, awn
Tolerance and resistance - Stress tolerance
 GO:0009414 - response to water deprivation
GO:0010857 - calcium-dependent protein kinase activity
GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0005509 - calcium ion binding
 TO:0000276 - drought tolerance
 PO:0009029 - stamen
PO:0009049 - inflorescence
Os09g0514200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os09g33910.1
CDPK25 OsCDPK25
OsCPK25
CPK25
 CALCIUM-DEPENDENT PROTEIN KINASE 25 calcium-dependent protein kinase
 11 Reproductive organ - Inflorescence
Tolerance and resistance - Stress tolerance
Biochemical character
Reproductive organ - Spikelet, flower, glume, awn
 GO:0005509 - calcium ion binding
GO:0005524 - ATP binding
GO:0005737 - cytoplasm
GO:0009414 - response to water deprivation
GO:0004674 - protein serine/threonine kinase activity
GO:0005886 - plasma membrane
GO:0010857 - calcium-dependent protein kinase activity
GO:0031000 - response to caffeine
GO:0080092 - regulation of pollen tube growth
 TO:0000276 - drought tolerance
 PO:0009049 - inflorescence
PO:0009029 - stamen
Os11g0136600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os11g04170.1
CDPK26 OsCDPK26
OsCPK26
CPK26
 CALCIUM-DEPENDENT PROTEIN KINASE 26 calcium-dependent protein kinase
 12 Reproductive organ - Spikelet, flower, glume, awn
Reproductive organ - Inflorescence
Biochemical character
 GO:0004674 - protein serine/threonine kinase activity
GO:0005509 - calcium ion binding
GO:0005524 - ATP binding
GO:0031000 - response to caffeine
GO:0010857 - calcium-dependent protein kinase activity
 PO:0009029 - stamen
PO:0009049 - inflorescence
Os12g0133500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os12g03970.1
CDPK27 OsCDPK27
OsCPK27
CPK27
 CALCIUM-DEPENDENT PROTEIN KINASE 27 calcium-dependent protein kinase
 12 Biochemical character
Reproductive organ - Inflorescence
Reproductive organ - Spikelet, flower, glume, awn
 GO:0004674 - protein serine/threonine kinase activity
GO:0005524 - ATP binding
GO:0005509 - calcium ion binding
 PO:0009029 - stamen
PO:0009049 - inflorescence
Os12g0486600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os12g30150.1
CDPK29 OsCDPK29
OsCPK29
 CALCIUM-DEPENDENT PROTEIN KINASE 29 calcium-dependent protein kinase
 12 Reproductive organ - Spikelet, flower, glume, awn
Biochemical character
Reproductive organ - Inflorescence
 GO:0010857 - calcium-dependent protein kinase activity
GO:0004674 - protein serine/threonine kinase activity
GO:0005509 - calcium ion binding
GO:0005524 - ATP binding
 PO:0009049 - inflorescence
PO:0009029 - stamen
Os12g0230200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os12g12860.1
GHD7 Ghd2
Ghd7
OsGhd7
OsCCT26
OsCMF8
OsI
Ghd7/Hd4
Hd4
EH7-1/Hd4
Ghd7-0a
EH7-1
EH7/Ghd7
EH7
OsEH7
GLW7.1
OsGLW7.1
 HEADING DATE 7 heading date 7
"Grain number
plant height
and heading date7"
"GRAIN NUMBER
PLANT HEIGHT AND HEADING DATE 7"
CCT domain-containing gene 26
CCT (CO, CO-LIKE and TOC1) domain protein 26
CCT domain protein 26
CCT MOTIF FAMILY (CMF) gene 8
Early heading 7
"Grain Length
Width and Weight 7.1"
Grain height date 7
 7 Seed - Physiological traits - Taste
Seed - Physiological traits - Storage substances
Reproductive organ - Heading date
Character as QTL - Plant growth activity
Character as QTL - Yield and productivity
Vegetative organ - Culm
Seed - Physiological traits
Heterochrony
Reproductive organ - Spikelet, flower, glume, awn
Character as QTL - Grain quality
Seed - Morphological traits - Grain shape
 GO:0009648 - photoperiodism
GO:0030307 - positive regulation of cell growth
GO:0006521 - regulation of cellular amino acid metabolic process
GO:0008643 - carbohydrate transport
GO:0015770 - sucrose transport
GO:0010109 - regulation of photosynthesis
GO:0006808 - regulation of nitrogen utilization
GO:0010372 - positive regulation of gibberellin biosynthetic process
GO:0009740 - gibberellic acid mediated signaling
GO:0005985 - sucrose metabolic process
GO:0010229 - inflorescence development
GO:0051171 - regulation of nitrogen compound metabolic process
GO:0009744 - response to sucrose stimulus
GO:0048573 - photoperiodism, flowering
GO:0009416 - response to light stimulus
GO:0048579 - negative regulation of long-day photoperiodism, flowering
GO:0009745 - sucrose mediated signaling
GO:0007623 - circadian rhythm
GO:0006109 - regulation of carbohydrate metabolic process
GO:0042128 - nitrate assimilation
GO:0045892 - negative regulation of transcription, DNA-dependent
GO:0045848 - positive regulation of nitrogen utilization
GO:0051781 - positive regulation of cell division
 TO:0000357 - growth and development trait
TO:0000019 - seedling height
TO:0000456 - spikelet number
TO:0000696 - starch content
TO:0000447 - filled grain number
TO:0000107 - endosperm storage protein-1 content
TO:0000710 - globulin protein content
TO:0000590 - grain weight
TO:0000229 - photoperiod sensitivity
TO:0002680 - albumin content
TO:0000109 - endosperm storage protein-2 content
TO:0000621 - inflorescence development trait
TO:0002653 - endosperm storage protein content
TO:0000382 - 1000-seed weight
TO:0000152 - panicle number
TO:0000011 - nitrogen sensitivity
TO:0000734 - grain length
TO:0000449 - grain yield per plant
TO:0000196 - amylose content
TO:0000211 - gel consistency
TO:0000469 - days to maturity
TO:0000207 - plant height
TO:0000137 - days to heading
TO:0002616 - flowering time
TO:0002759 - grain number
TO:0000557 - secondary branch number
TO:0000352 - plant dry weight
TO:0000397 - grain size
TO:0000396 - grain yield
TO:0000162 - seed quality
TO:0000266 - chalky endosperm
TO:0002675 - gibberellic acid content
TO:0000050 - inflorescence branching
 PO:0001083 - inflorescence development stage
Os07g0261200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g15770.1
RL9 rl9
SLL1/RL9
SLL1
OsSLL1
OsADD1
ADD1
AH2
OsAH2
CL1
OsCL1
OsKAN1
KAN1
 ROLLED LEAF 9 SHALLOT-LIKE1
SHALLOT-LIKE 1
ROLLED LEAF9
anther dehiscence defected 1
abnormal hull 2
curling leaf 1
KANADI1
OsKANADI1
 9 Seed - Morphological traits - Grain shape
Seed - Morphological traits
Vegetative organ - Root
Reproductive organ - Inflorescence
Reproductive organ - panicle
Character as QTL - Grain quality
Vegetative organ - Culm
Vegetative organ - Leaf
Coloration - Chlorophyll
Character as QTL - Yield and productivity
Character as QTL - Plant growth activity
Reproductive organ - Spikelet, flower, glume, awn
Other
 GO:0042127 - regulation of cell proliferation
GO:0045892 - negative regulation of transcription, DNA-dependent
GO:0048366 - leaf development
GO:0005634 - nucleus
GO:0048437 - floral organ development
GO:0003677 - DNA binding
GO:0003682 - chromatin binding
GO:0009739 - response to gibberellin stimulus
GO:0001558 - regulation of cell growth
GO:0030154 - cell differentiation
GO:0048653 - anther development
GO:0009555 - pollen development
GO:0010229 - inflorescence development
GO:0010088 - phloem development
GO:0010158 - abaxial cell fate specification
GO:0006355 - regulation of transcription, DNA-dependent
GO:0009685 - gibberellin metabolic process
GO:0006351 - transcription, DNA-dependent
GO:0009957 - epidermal cell fate specification
GO:0045487 - gibberellin catabolic process
GO:0080006 - internode patterning
GO:0051510 - regulation of unidimensional cell growth
GO:0048316 - seed development
GO:0012501 - programmed cell death
GO:0048364 - root development
 TO:0000152 - panicle number
TO:0001027 - net photosynthetic rate
TO:0000295 - chlorophyll-b content
TO:0000162 - seed quality
TO:0002757 - flag leaf length
TO:0000207 - plant height
TO:0000396 - grain yield
TO:0000370 - leaf width
TO:0000135 - leaf length
TO:0000326 - leaf color
TO:0000382 - 1000-seed weight
TO:0002681 - leaf curling
TO:0000316 - photosynthetic ability
TO:0000462 - gelatinization temperature
TO:0000474 - glume opening
TO:0000166 - gibberellic acid sensitivity
TO:0002675 - gibberellic acid content
TO:0000657 - spikelet anatomy and morphology trait
TO:0000655 - leaf development trait
TO:0000019 - seedling height
TO:0000165 - panicle exsertion
TO:0000495 - chlorophyll content
TO:0000145 - internode length
TO:0000449 - grain yield per plant
TO:0000455 - seed set percent
TO:0000040 - panicle length
TO:0000079 - lemma and palea anatomy and morphology trait
TO:0000598 - protein content
TO:0000391 - seed size
TO:0000421 - pollen fertility
TO:0002689 - leaf sheath length
TO:0000227 - root length
TO:0001012 - lateral root length
TO:0000587 - endosperm quality
TO:0006022 - floral organ development trait
TO:0000085 - leaf rolling
TO:0000053 - pollen sterility
TO:0000072 - awn length
TO:0000397 - grain size
TO:0000653 - seed development trait
TO:0000656 - root development trait
TO:0001006 - adventitious root number
TO:0000196 - amylose content
TO:0000734 - grain length
TO:0000211 - gel consistency
 PO:0020104 - leaf sheath
PO:0006019 - leaf abaxial epidermis
PO:0020142 - stem internode
PO:0001007 - pollen development stage
PO:0025426 - phloem development stage
PO:0001170 - seed development stage
PO:0009051 - spikelet
PO:0025585 - floral organ formation stage
PO:0000017 - vascular leaf primordium
PO:0020148 - shoot apical meristem
PO:0009005 - root
PO:0007520 - root development stage
PO:0009049 - inflorescence
PO:0020141 - stem node
PO:0009047 - stem
PO:0001050 - leaf development stage
PO:0001004 - anther development stage
PO:0000293 - guard cell
PO:0025034 - leaf
Os09g0395300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os09g23200.1
AGPL4 OsAGPL4
APL4
OsAPL4
OsSTA193
 ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 4 sativa ADP-glucose pyrophosphorylase large subunit 4
ADP-glucose Pyrophosphorylase large subunit 4
AGPase large subunit 4
AGPase large unit 4
 7 Seed - Morphological traits - Endosperm
Reproductive organ - Spikelet, flower, glume, awn
Biochemical character
Seed - Physiological traits - Storage substances
 GO:0009536 - plastid
GO:0009058 - biosynthetic process
GO:0016779 - nucleotidyltransferase activity
GO:0019252 - starch biosynthetic process
GO:0008878 - glucose-1-phosphate adenylyltransferase activity
 TO:0000696 - starch content
TO:0000106 - male sterility type
 PO:0009066 - anther
PO:0009089 - endosperm
Os07g0243200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g13980.1
AGO1B OsAGO1b
AGO1b
AGO1-2
 ARGONAUTE 1B Protein argonaute 1B
 4 Vegetative organ - Leaf
Reproductive organ - Pollination, fertilization, fertility
Other
Vegetative organ - Culm
Reproductive organ - Spikelet, flower, glume, awn
 GO:0003676 - nucleic acid binding
GO:0005737 - cytoplasm
GO:0048366 - leaf development
GO:0005634 - nucleus
GO:0031047 - gene silencing by RNA
 TO:0000207 - plant height
TO:0000346 - tiller number
TO:0000455 - seed set percent
TO:0000421 - pollen fertility
TO:0000655 - leaf development trait
 PO:0000002 - anther wall
PO:0025034 - leaf
PO:0001050 - leaf development stage
Os04g0566500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os04g47870.2
LOC_Os04g47870.1
LCD1 NRAMP5
OsNRAMP5
OsNramp5
OsLCD1
NRAM5
OsNRAM5
 LOW CADMIUM ACCUMULATION 1 BACTERIOCIDE EFFECT 5
NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 5
low cadmium accumulation 1
low Cd-accumulation 1
 7 Tolerance and resistance - Stress tolerance
Vegetative organ - Culm
Vegetative organ - Leaf
Reproductive organ - Spikelet, flower, glume, awn
Seed - Physiological traits - Storage substances
Character as QTL - Yield and productivity
Tolerance and resistance - Disease resistance
Biochemical character
Coloration - Chlorophyll
 GO:0055072 - iron ion homeostasis
GO:0010042 - response to manganese ion
GO:0006979 - response to oxidative stress
GO:0010033 - response to organic substance
GO:0070574 - cadmium ion transmembrane transport
GO:0006826 - iron ion transport
GO:0005886 - plasma membrane
GO:0009609 - response to symbiotic bacterium
GO:0046686 - response to cadmium ion
GO:0002679 - respiratory burst during defense response
GO:0010232 - vascular transport
GO:0010288 - response to lead ion
GO:0010378 - temperature compensation of the circadian clock
GO:0051592 - response to calcium ion
GO:0002237 - response to molecule of bacterial origin
GO:0015691 - cadmium ion transport
GO:0030001 - metal ion transport
GO:0016021 - integral to membrane
GO:0006811 - ion transport
GO:0005783 - endoplasmic reticulum
GO:0042742 - defense response to bacterium
GO:0080053 - response to phenylalanine
GO:0007623 - circadian rhythm
GO:0009408 - response to heat
GO:0006537 - glutamate biosynthetic process
GO:0006523 - alanine biosynthetic process
GO:0006828 - manganese ion transport
GO:0009094 - L-phenylalanine biosynthetic process
GO:0009088 - threonine biosynthetic process
GO:0009266 - response to temperature stimulus
 TO:0000449 - grain yield per plant
TO:0000044 - stigma exsertion
TO:0000636 - relative shoot dry weight
TO:0000644 - relative root dry weight
TO:0001034 - relative plant height
TO:0000227 - root length
TO:0000073 - manganese sensitivity
TO:0000397 - grain size
TO:0000203 - bacterial leaf streak disease resistance
TO:0020091 - manganese content
TO:0000578 - root fresh weight
TO:0000080 - micronutrient sensitivity
TO:0000078 - root dry weight
TO:0000153 - relative yield
TO:0002657 - oxidative stress
TO:0000571 - shoot fresh weight
TO:0000495 - chlorophyll content
TO:0000455 - seed set percent
TO:0002662 - leaf rolling tolerance
TO:0000207 - plant height
TO:0002673 - amino acid content
TO:0000293 - chlorophyll-a content
TO:0000333 - sugar content
TO:0000432 - temperature response trait
TO:0000316 - photosynthetic ability
TO:0000259 - heat tolerance
TO:0000552 - shoot dry weight
TO:0000295 - chlorophyll-b content
TO:0001016 - relative chlorophyll content
TO:0000605 - hydrogen peroxide content
TO:0000516 - relative root length
TO:0000346 - tiller number
TO:0000388 - forage yield
TO:0000326 - leaf color
 PO:0000025 - root tip
PO:0007632 - seed maturation stage
PO:0005059 - root endodermis
PO:0000016 - lateral root primordium
PO:0005772 - exodermis
PO:0001170 - seed development stage
PO:0007633 - endosperm development stage
Os07g0257200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g15370.2
LOC_Os07g15370.1
HB4 OSHB4
OsHox32
HOX32
OsHB4
Oshox32
PHB3
OsHDZ13
OsHDZIP13
HDZ13
HDZIP13
 HOMEODOMAIN CONTAINING PROTEIN 4 Homeobox-leucine zipper protein HOX32
Homeodomain transcription factor HOX32
HD-ZIP protein HOX32
rice homeobox gene 32
homeodomain-leucine zipper transcription factor 13
OsHDZIP transcription factor 13
 3 Other
Vegetative organ - Culm
Vegetative organ - Leaf
Coloration - Chlorophyll
Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
 GO:0005886 - plasma membrane
GO:0003700 - transcription factor activity
GO:0048366 - leaf development
GO:0009416 - response to light stimulus
GO:0009753 - response to jasmonic acid stimulus
GO:0009737 - response to abscisic acid stimulus
GO:0046686 - response to cadmium ion
GO:0009733 - response to auxin stimulus
GO:0009414 - response to water deprivation
GO:0006350 - transcription
GO:0006355 - regulation of transcription, DNA-dependent
GO:0043565 - sequence-specific DNA binding
GO:0042546 - cell wall biogenesis
GO:0005634 - nucleus
 TO:0000051 - stem strength
TO:0000495 - chlorophyll content
TO:0000655 - leaf development trait
TO:0000370 - leaf width
TO:0000172 - jasmonic acid sensitivity
TO:0000206 - leaf angle
TO:0001017 - water use efficiency
TO:0000615 - abscisic acid sensitivity
TO:0000163 - auxin sensitivity
TO:0000075 - light sensitivity
TO:0000207 - plant height
TO:0001015 - photosynthetic rate
TO:0000085 - leaf rolling
TO:0000276 - drought tolerance
 PO:0025034 - leaf
PO:0001050 - leaf development stage
PO:0009005 - root
PO:0009049 - inflorescence
PO:0009089 - endosperm
Os03g0640800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g43930.2
LOC_Os03g43930.1
OSC4 Osc4
OsC4
Osg4B
OsLTPc1
OsLtpIII.1
C4
 ANTHER SPECIFIC PROTEIN 4 type C non-specific lipid transfer protein 1
non-specific lipid transfer protein c1
lipid transfer protein c1
 8 Reproductive organ - Spikelet, flower, glume, awn
 GO:0009555 - pollen development
GO:0048653 - anther development
 PO:0001007 - pollen development stage
PO:0001004 - anther development stage
Os08g0546300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g43290.1
C6 Osc6
Osg6B
OsG6B
OsLTPG25
OsLTPg25
OsLtpVII.1
Os C6
 ANTHER SPECIFIC PROTEIN 6 GPI-anchored non-specific lipid transfer protein 25
type G nsLTP 25
type G non-specific lipid transfer protein 25
 11 Reproductive organ - Spikelet, flower, glume, awn
Biochemical character
Tolerance and resistance - Stress tolerance
 GO:0010584 - pollen exine formation
GO:0009555 - pollen development
GO:0009266 - response to temperature stimulus
GO:0006869 - lipid transport
GO:0009408 - response to heat
GO:0008233 - peptidase activity
 TO:0000259 - heat tolerance
TO:0000432 - temperature response trait
 PO:0009066 - anther
Os11g0582500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os11g37280.1
RAG MADS3
OsMADS3
OsMADS3(t)
RMADS222
RAG1
rf3
 RICE AGAMOUS MADS box gene3
MADS-box transcription factor 3
Protein AGAMOUS-like
fertility restoration 3
 1 Reproductive organ - Pollination, fertilization, fertility - Male sterility
Reproductive organ - panicle
Reproductive organ - Spikelet, flower, glume, awn
Other
Reproductive organ - Inflorescence
 GO:0048653 - anther development
GO:0030154 - cell differentiation
GO:0043565 - sequence-specific DNA binding
GO:0010229 - inflorescence development
GO:0009908 - flower development
GO:0003677 - DNA binding
GO:0003700 - transcription factor activity
GO:0005634 - nucleus
GO:0006350 - transcription
GO:0006355 - regulation of transcription, DNA-dependent
 TO:0000622 - flower development trait
TO:0006023 - lodicule development trait
TO:0000621 - inflorescence development trait
TO:0006009 - lodicule anatomy and morphology trait
TO:0000215 - stamen anatomy and morphology trait
 PO:0009029 - stamen
PO:0007615 - flower development stage
PO:0009036 - lodicule
PO:0001004 - anther development stage
PO:0001049 - lodicule development stage
PO:0001083 - inflorescence development stage
Os01g0201700 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g10504.3
LOC_Os01g10504.2
LOC_Os01g10504.1
RAP1A OsMADS15
FDRMADS3
RMADS215
MADS15
DEP
 RICE APETALA 1A MADS-box transcription factor 15
Protein APETALA1-like A
degenerative palea
MADS box gene15
 7 Reproductive organ - panicle
Reproductive organ - Heading date
Other
Reproductive organ - Spikelet, flower, glume, awn
Reproductive organ
Tolerance and resistance - Stress tolerance
Vegetative organ - Leaf
 GO:0010229 - inflorescence development
GO:0006355 - regulation of transcription, DNA-dependent
GO:0006350 - transcription
GO:0003700 - transcription factor activity
GO:0005515 - protein binding
GO:0005634 - nucleus
GO:0031667 - response to nutrient levels
GO:0048573 - photoperiodism, flowering
GO:0043565 - sequence-specific DNA binding
GO:0010228 - vegetative to reproductive phase transition
GO:0003006 - reproductive developmental process
GO:0016036 - cellular response to phosphate starvation
GO:0042594 - response to starvation
 TO:0000621 - inflorescence development trait
TO:0002616 - flowering time
TO:0000206 - leaf angle
TO:0000102 - phosphorus sensitivity
TO:0000137 - days to heading
 PO:0020094 - plant egg cell
PO:0001083 - inflorescence development stage
Os07g0108900 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os07g01820.6
LOC_Os07g01820.5
LOC_Os07g01820.4
LOC_Os07g01820.1
LOC_Os07g01820.2
LOC_Os07g01820.3
LF1 HOX10
Oshox10
OsHox10
OsHB1
HB1
OSHB1
LF1/OsHB1
OsLF1
OsHDZ9
OsHDZIP9
HDZ9
HDZIP9
 LATERAL FLORET 1 rice homeobox gene 10
Homeobox-leucine zipper protein HOX10
Homeodomain transcription factor HOX10
HD-ZIP protein HOX10
HOMEODOMAIN CONTAINING PROTEIN 1
Homeodomain transcription factor HOX10
lateral florets 1
homeodomain-leucine zipper transcription factor 9
transcription factor 9
 3 Other
Vegetative organ - Leaf
Reproductive organ - Spikelet, flower, glume, awn
 GO:0009753 - response to jasmonic acid stimulus
GO:0005634 - nucleus
GO:0003700 - transcription factor activity
GO:0048366 - leaf development
GO:0006350 - transcription
GO:0006355 - regulation of transcription, DNA-dependent
GO:0010582 - floral meristem determinacy
GO:0009908 - flower development
GO:0001708 - cell fate specification
GO:0043565 - sequence-specific DNA binding
GO:0009955 - adaxial/abaxial pattern formation
 TO:0000370 - leaf width
TO:0000655 - leaf development trait
TO:0000614 - lemma shape
TO:0000172 - jasmonic acid sensitivity
TO:0000657 - spikelet anatomy and morphology trait
TO:0002672 - auxin content
 PO:0020104 - leaf sheath
PO:0009037 - lemma
PO:0001050 - leaf development stage
PO:0006022 - bundle sheath extension
PO:0020148 - shoot apical meristem
PO:0000017 - vascular leaf primordium
PO:0009049 - inflorescence
PO:0025034 - leaf
PO:0009047 - stem
PO:0005352 - xylem
PO:0009005 - root
Os03g0109400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g01890.2
LOC_Os03g01890.1
HAP3D OsHAP3D
OsEnS-83
OsNF-YB9
NF-YB9
NFYB9
OsLEC1A
LEC1A
 HAP3D SUBUNIT OF CCAAT-BOX BINDING COMPLEX HAP3 subunit D
LEC1-type 3 subunit protein-D
endosperm-specific gene 83
NUCLEAR FACTOR-Y subunit B9
NUCLEAR FACTOR-Y subunit NF-YB9
HAP3 SUBUNIT D
NF-YB subunit 9
NF-YB family 9
 6 Tolerance and resistance - Stress tolerance
Seed - Morphological traits - Endosperm
Reproductive organ - Pollination, fertilization, fertility - Sterility
Seed - Physiological traits - Storage substances
Other
Seed - Morphological traits - Grain shape
Character as QTL - Plant growth activity
Reproductive organ - Spikelet, flower, glume, awn
Character as QTL - Grain quality
Reproductive organ - Heading date
 GO:0005634 - nucleus
GO:0043565 - sequence-specific DNA binding
GO:0048316 - seed development
GO:0006355 - regulation of transcription, DNA-dependent
GO:0009790 - embryonic development
GO:0048579 - negative regulation of long-day photoperiodism, flowering
GO:0006350 - transcription
GO:0010581 - regulation of starch biosynthetic process
GO:0005737 - cytoplasm
GO:0042127 - regulation of cell proliferation
GO:0009845 - seed germination
 TO:0000734 - grain length
TO:0000399 - grain thickness
TO:0000391 - seed size
TO:0000266 - chalky endosperm
TO:0000304 - seed thickness
TO:0000149 - seed width
TO:0000146 - seed length
TO:0000137 - days to heading
TO:0000421 - pollen fertility
TO:0000696 - starch content
TO:0000485 - sterility related trait
TO:0000207 - plant height
TO:0000346 - tiller number
TO:0000639 - seed fertility
TO:0000382 - 1000-seed weight
TO:0000162 - seed quality
TO:0000222 - head rice
TO:0000064 - embryo related trait
TO:0000575 - endosperm related trait
TO:0000487 - endosperm color
TO:0020033 - glume length
TO:0000653 - seed development trait
TO:0000276 - drought tolerance
TO:0000211 - gel consistency
TO:0000196 - amylose content
 PO:0020094 - plant egg cell
PO:0000003 - whole plant
PO:0009009 - plant embryo
PO:0009089 - endosperm
PO:0009010 - seed
PO:0001170 - seed development stage
Os06g0285200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g17480.1
CYP703A3 OsCYP703A3
OsCYP71AB12
CYP71AB12
 CYTOCHROME P450 HYDROXYLASE 703A3 8 Reproductive organ - Spikelet, flower, glume, awn
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Biochemical character
 GO:0048653 - anther development
GO:0016020 - membrane
GO:0010584 - pollen exine formation
GO:0004497 - monooxygenase activity
GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen
GO:0020037 - heme binding
GO:0005506 - iron ion binding
GO:0010480 - microsporocyte differentiation
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
 TO:0000437 - male sterility
TO:0000245 - pollen free
 PO:0001007 - pollen development stage
PO:0001004 - anther development stage
PO:0009066 - anther
Os08g0131100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g03682.1
PIP2;2 OsPIP2;2
PIP2-2
OsPIP2-3
OsPIP2.1
PIP2.1
 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2 Probable aquaporin PIP2-2
Plasma membrane intrinsic protein 2-2
 2 Seed - Physiological traits - Dormancy
Tolerance and resistance - Disease resistance
Reproductive organ - Spikelet, flower, glume, awn
Tolerance and resistance - Stress tolerance
Biochemical character
 GO:0016021 - integral to membrane
GO:0050832 - defense response to fungus
GO:0009651 - response to salt stress
GO:0006970 - response to osmotic stress
GO:0009409 - response to cold
GO:0009414 - response to water deprivation
GO:0030104 - water homeostasis
GO:0042542 - response to hydrogen peroxide
GO:0042742 - defense response to bacterium
GO:0002237 - response to molecule of bacterial origin
GO:0045089 - positive regulation of innate immune response
GO:0043410 - positive regulation of MAPKKK cascade
GO:0034021 - response to silicon dioxide
GO:0005886 - plasma membrane
GO:0007623 - circadian rhythm
GO:0009737 - response to abscisic acid stimulus
GO:0055085 - transmembrane transport
GO:0046686 - response to cadmium ion
GO:0005215 - transporter activity
GO:0006833 - water transport
 TO:0000095 - osmotic response sensitivity
TO:0000615 - abscisic acid sensitivity
TO:0006001 - salt tolerance
TO:0000303 - cold tolerance
TO:0000276 - drought tolerance
TO:0000203 - bacterial leaf streak disease resistance
TO:0000175 - bacterial blight disease resistance
TO:0006002 - proline content
TO:0002616 - flowering time
TO:0000074 - blast disease
 PO:0007616 - flowering stage
PO:0025034 - leaf
Os02g0629200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g41860.2
LOC_Os02g41860.1
LOC_Os02g41860.4
LOC_Os02g41860.3
ASA OsNIP3;1
NIP3;1
NIP3-1
OsNIP3.1
NIP3.1
OsASA
 APICAL SPIKELET ABORTION Aquaporin NIP3-1
NOD26-like intrinsic protein 3-1
nodulin 26-like intrinsic protein 3-1
apical spikelet abortion
 10 Reproductive organ - Pollination, fertilization, fertility
Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
Reproductive organ - panicle
Reproductive organ - Inflorescence
Biochemical character
 GO:0010229 - inflorescence development
GO:0055085 - transmembrane transport
GO:0005215 - transporter activity
GO:0016020 - membrane
GO:0009536 - plastid
GO:0010036 - response to boron
GO:0048656 - tapetal layer formation
GO:0080142 - regulation of salicylic acid biosynthetic process
GO:0010337 - regulation of salicylic acid metabolic process
GO:0016021 - integral to membrane
GO:0009556 - microsporogenesis
GO:0009555 - pollen development
 TO:0000421 - pollen fertility
TO:0000605 - hydrogen peroxide content
TO:0000214 - anther shape
TO:0000187 - anther color
TO:0000210 - anther number
TO:0006011 - lodicule shape
TO:0000657 - spikelet anatomy and morphology trait
TO:0000621 - inflorescence development trait
TO:0000207 - plant height
TO:0000346 - tiller number
TO:0000614 - lemma shape
 PO:0005352 - xylem
PO:0000074 - parenchyma cell
PO:0009053 - peduncle
PO:0001007 - pollen development stage
PO:0005004 - shoot node
PO:0009049 - inflorescence
PO:0009066 - anther
PO:0001083 - inflorescence development stage
Os10g0513200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os10g36924.1
SIP1;2 OsSIP1;2
OsSTA98
OsSIP2
SIP2
 SMALL AND BASIC INTRINSIC PROTEIN 1;2 3 Reproductive organ - Spikelet, flower, glume, awn
Biochemical character
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
 GO:0016020 - membrane
GO:0034976 - response to endoplasmic reticulum stress
GO:0009269 - response to desiccation
GO:0006979 - response to oxidative stress
GO:0016021 - integral to membrane
GO:0009651 - response to salt stress
GO:0006810 - transport
GO:0009414 - response to water deprivation
GO:0042542 - response to hydrogen peroxide
GO:0006970 - response to osmotic stress
GO:0005215 - transporter activity
GO:0009409 - response to cold
GO:0009408 - response to heat
GO:0051775 - response to redox state
GO:0005789 - endoplasmic reticulum membrane
GO:0030104 - water homeostasis
GO:0050832 - defense response to fungus
GO:0016023 - cytoplasmic membrane-bounded vesicle
 TO:0000259 - heat tolerance
TO:0000074 - blast disease
TO:0000095 - osmotic response sensitivity
TO:0006001 - salt tolerance
TO:0000276 - drought tolerance
TO:0000303 - cold tolerance
 PO:0009066 - anther
Os03g0320000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g20410.1
MIR159A miR159a
osa-miR159a
osa-MIR159a
OsmiR159a
OsmiR159a.2
miR159a.2
OsmiR159a.1
miR159a.1
osa-miR159a.1
osa-miR159a.2
 MICRORNA159A 1 Tolerance and resistance - Insect resistance
Seed - Morphological traits
Reproductive organ - Spikelet, flower, glume, awn
Character as QTL - Yield and productivity
Tolerance and resistance - Stress tolerance
Reproductive organ - Pollination, fertilization, fertility
Vegetative organ - Culm
Tolerance and resistance - Disease resistance
Other
Seed - Physiological traits - Storage substances
 GO:0009409 - response to cold
GO:0050832 - defense response to fungus
GO:0035195 - gene silencing by miRNA
GO:0035068 - micro-ribonucleoprotein complex
GO:0002213 - defense response to insect
GO:0048443 - stamen development
GO:0048316 - seed development
GO:0016442 - RNA-induced silencing complex
GO:0006379 - mRNA cleavage
GO:0009555 - pollen development
 TO:0000074 - blast disease
TO:0000734 - grain length
TO:0000342 - panicle axis angle
TO:0000424 - brown planthopper resistance
TO:0000485 - sterility related trait
TO:0000207 - plant height
TO:0006032 - panicle size
TO:0000653 - seed development trait
TO:0000371 - yield trait
TO:0000053 - pollen sterility
TO:0000187 - anther color
TO:0000447 - filled grain number
TO:0000303 - cold tolerance
TO:0000696 - starch content
 PO:0001007 - pollen development stage
PO:0001170 - seed development stage
Os01g0507000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g32259.1
GSL5 OsGSL5
OsSTA170
CalS5
OsCalS5
 BETA-1,3-GLUCANASE ACTIVITY 5 Oryza sativa callose synthase 5
callose synthase 5
Glucan Synthase-Like 5
 6 Reproductive organ - Pollination, fertilization, fertility - Male sterility
Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
Reproductive organ - Pollination, fertilization, fertility - Meiosis
Biochemical character
 GO:0051445 - regulation of meiotic cell cycle
GO:0009555 - pollen development
GO:0009409 - response to cold
GO:0070592 - cell wall polysaccharide biosynthetic process
GO:0051728 - cell cycle switching, mitotic to meiotic cell cycle
GO:0005886 - plasma membrane
GO:0000148 - 1,3-beta-glucan synthase complex
GO:0007129 - synapsis
GO:0010383 - cell wall polysaccharide metabolic process
GO:0051446 - positive regulation of meiotic cell cycle
GO:0016021 - integral to membrane
GO:0005911 - cell-cell junction
GO:0052543 - callose deposition in cell wall
GO:0003843 - 1,3-beta-glucan synthase activity
GO:0006075 - 1,3-beta-glucan biosynthetic process
GO:0007140 - male meiosis
GO:0009663 - plasmodesma organization
GO:0009556 - microsporogenesis
 TO:0000729 - meiotic cell cycle trait
TO:0000421 - pollen fertility
TO:0000639 - seed fertility
TO:0006007 - polysaccharide content
TO:0000303 - cold tolerance
TO:0000455 - seed set percent
 PO:0001008 - C callose wall formation in pollen mother cells stage
PO:0009066 - anther
PO:0025264 - anther locule
PO:0001007 - pollen development stage
Os06g0182300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g08380.1
HAK6 OsHAK6
OsSTA42
 HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 6 High-affinity Potassium(K+) Transporter 6
Potassium transporter 6.
 1 Reproductive organ - Spikelet, flower, glume, awn
Biochemical character
 GO:0015079 - potassium ion transmembrane transporter activity
GO:0016021 - integral to membrane
GO:0006813 - potassium ion transport
GO:0030955 - potassium ion binding
 PO:0009066 - anther
Os01g0932500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os01g70660.1
PLDbeta2 OsPLDbeta2
OsSTA86
OsC2DP27
C2DP27
 PHOSPHOLIPASE D beta 2 C2 Domain-Containing Protein 27
 3 Biochemical character
Reproductive organ - Spikelet, flower, glume, awn
 GO:0046686 - response to cadmium ion
GO:0070290 - NAPE-specific phospholipase D activity
GO:0004630 - phospholipase D activity
GO:0005509 - calcium ion binding
GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding
GO:0009816 - defense response to bacterium, incompatible interaction
GO:0016020 - membrane
GO:0016042 - lipid catabolic process
GO:0046470 - phosphatidylcholine metabolic process
 PO:0009066 - anther
Os03g0119100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g02740.1
PLDdelta1 OsPLDdelta1
OsPLDdelta
OsSTA233
OsC2DP77
C2DP77
 PHOSPHOLIPASE D delta 1 phospholipase D delta
C2 Domain-Containing Protein 77
 9 Reproductive organ - Spikelet, flower, glume, awn
Biochemical character
 GO:0005509 - calcium ion binding
GO:0046470 - phosphatidylcholine metabolic process
GO:0070290 - NAPE-specific phospholipase D activity
GO:0012501 - programmed cell death
GO:0009409 - response to cold
GO:0004630 - phospholipase D activity
GO:0046473 - phosphatidic acid metabolic process
GO:0009789 - positive regulation of abscisic acid mediated signaling
GO:0016042 - lipid catabolic process
GO:0005773 - vacuole
GO:0005886 - plasma membrane
GO:0009506 - plasmodesma
 PO:0009066 - anther
Os09g0543100 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os09g37100.1
DH1 OsDH1
OsLBD2-1
LBD2-1
OsLOB16
LOB16
OsLBD28
LBD28
LBD16
OsLBD16
 DEGENERATED HULL 1 degenerated hull1
lateral organ boundaries domain 2-1
 2 Vegetative organ - Root
Reproductive organ - Spikelet, flower, glume, awn
Other
 GO:0048830 - adventitious root development
GO:0005634 - nucleus
GO:0006355 - regulation of transcription, DNA-dependent
GO:0009755 - hormone-mediated signaling
GO:0009734 - auxin mediated signaling pathway
GO:0048437 - floral organ development
GO:0051302 - regulation of cell division
GO:0009736 - cytokinin mediated signaling
GO:0010311 - lateral root formation
 TO:0006022 - floral organ development trait
TO:0000656 - root development trait
TO:0002685 - crown root number
TO:0000240 - sterile lemma length
 PO:0000025 - root tip
PO:0025034 - leaf
PO:0009030 - carpel
PO:0000016 - lateral root primordium
PO:0009049 - inflorescence
PO:0007520 - root development stage
PO:0009010 - seed
PO:0009089 - endosperm
PO:0007504 - crown root primordium formation stage
PO:0007518 - crown root emergence stage
PO:0009009 - plant embryo
Os02g0820500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g57490.1
OG1 OsOPR7
OPR7
OsOPR13
OsOPR3
OsOPR5
OsOPR9
OsOPR08-1
OPR13
OPR3
OPR5
OPR9
OPR08-1
OsOPR8
OPR8
 OPEN GLUME1 12-oxo-phytodienoic acid reductase 7
12-oxophytodienoate reductase7
OPDA reductase 7
open glume 1
 8 Reproductive organ - Spikelet, flower, glume, awn
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
Tolerance and resistance - Insect resistance
Biochemical character
Character as QTL - Yield and productivity
 GO:0009695 - jasmonic acid biosynthetic process
GO:0002213 - defense response to insect
GO:0009828 - plant-type cell wall loosening
GO:0010181 - FMN binding
GO:0050832 - defense response to fungus
GO:0052541 - plant-type cell wall cellulose metabolic process
GO:0008643 - carbohydrate transport
GO:0016629 - 12-oxophytodienoate reductase activity
GO:0002215 - defense response to nematode
GO:0009867 - jasmonic acid mediated signaling pathway
GO:0007623 - circadian rhythm
GO:0005777 - peroxisome
GO:0009737 - response to abscisic acid stimulus
GO:0051607 - defense response to virus
 TO:0000615 - abscisic acid sensitivity
TO:0000424 - brown planthopper resistance
TO:0000184 - seed anatomy and morphology trait
TO:0000696 - starch content
TO:0000074 - blast disease
TO:0000020 - black streak dwarf virus resistance
TO:0002668 - jasmonic acid content
TO:0000396 - grain yield
TO:0000447 - filled grain number
TO:0006009 - lodicule anatomy and morphology trait
TO:0000384 - nematode damage resistance
TO:0002616 - flowering time
TO:0000269 - 100-seed weight
 PO:0025034 - leaf
PO:0009039 - glume
PO:0007616 - flowering stage
PO:0009036 - lodicule
PO:0009047 - stem
Os08g0459600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g35740.2
LOC_Os08g35740.1
PRR59 OsPRR59
Os-PRR59
Prr5
OsPRR5
OsCCT38
CCT38
 PSEUDO-RESPONSE REGULATOR 59 pseudo-response regulator 5
CCT domain-containing gene 38
CCT (CO, CO-LIKE and TOC1) domain protein 38
CCT domain protein 38
 11 Reproductive organ - Heading date
Reproductive organ - Spikelet, flower, glume, awn
Vegetative organ - Culm
 GO:0007623 - circadian rhythm
GO:0006355 - regulation of transcription, DNA-dependent
GO:0000156 - two-component response regulator activity
GO:0048576 - positive regulation of short-day photoperiodism, flowering
GO:0048579 - negative regulation of long-day photoperiodism, flowering
 TO:0000207 - plant height
TO:0000456 - spikelet number
TO:0002616 - flowering time
TO:0000137 - days to heading
 Os11g0157600 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os11g05930.1
LOC_Os11g05930.2
LOC_Os11g05930.3
LOC_Os11g05930.4
LOC_Os11g05930.5
SMG1 OsMKK4
MKK4
OsMKK4/SMG1
OsMAPKK4
MAPKK4
OsMEK4
MEK4
OsSMG1
SMG1/OsMEK6
OsMEK6
MEK6
OsSTS
STS
 SMALL GRAIN 1 MAPK kinase 4
mitogen-activated protein kinase kinase 4
small grain1
LARGE11
large grain 11
salt-tolerant and small grains
 2 Tolerance and resistance - Disease resistance
Reproductive organ - Panicle, Mode of branching
Tolerance and resistance - Stress tolerance
Vegetative organ - Leaf
Tolerance and resistance - Insect resistance
Character as QTL - Yield and productivity
Vegetative organ - Root
Seed - Morphological traits
Seed - Morphological traits - Grain shape
Reproductive organ - Spikelet, flower, glume, awn
Biochemical character
 GO:0005737 - cytoplasm
GO:0010200 - response to chitin
GO:0006970 - response to osmotic stress
GO:0010229 - inflorescence development
GO:0045595 - regulation of cell differentiation
GO:0050832 - defense response to fungus
GO:0016020 - membrane
GO:0009738 - abscisic acid mediated signaling
GO:0009414 - response to water deprivation
GO:0009733 - response to auxin stimulus
GO:0009735 - response to cytokinin stimulus
GO:0048364 - root development
GO:0008283 - cell proliferation
GO:0000165 - MAPKKK cascade
GO:0009741 - response to brassinosteroid stimulus
GO:0042742 - defense response to bacterium
GO:0009611 - response to wounding
GO:0005634 - nucleus
GO:0009651 - response to salt stress
GO:0009751 - response to salicylic acid stimulus
GO:0009739 - response to gibberellin stimulus
GO:0002213 - defense response to insect
GO:0080027 - response to herbivore
GO:0009409 - response to cold
GO:0009743 - response to carbohydrate stimulus
GO:0009742 - brassinosteroid mediated signaling
GO:0009690 - cytokinin metabolic process
GO:0009737 - response to abscisic acid stimulus
GO:0042127 - regulation of cell proliferation
 TO:0000166 - gibberellic acid sensitivity
TO:0000175 - bacterial blight disease resistance
TO:0000734 - grain length
TO:0002759 - grain number
TO:0000167 - cytokinin sensitivity
TO:0000456 - spikelet number
TO:0000206 - leaf angle
TO:0000391 - seed size
TO:0000439 - fungal disease resistance
TO:0000397 - grain size
TO:0000396 - grain yield
TO:0001034 - relative plant height
TO:0000516 - relative root length
TO:0000095 - osmotic response sensitivity
TO:0000590 - grain weight
TO:0000621 - inflorescence development trait
TO:0000454 - stem borer resistance
TO:0000207 - plant height
TO:0000074 - blast disease
TO:0000160 - UV light sensitivity
TO:0000615 - abscisic acid sensitivity
TO:0002660 - cytokinin content
TO:0002669 - diterpenoid phytoalexin content
TO:0000447 - filled grain number
TO:0000276 - drought tolerance
TO:0000656 - root development trait
TO:0000303 - cold tolerance
TO:0002677 - brassinosteroid sensitivity
TO:0000040 - panicle length
TO:0000163 - auxin sensitivity
TO:0000382 - 1000-seed weight
TO:0000557 - secondary branch number
TO:0000547 - primary branch number
TO:0000455 - seed set percent
TO:0000342 - panicle axis angle
TO:0006001 - salt tolerance
 PO:0001083 - inflorescence development stage
PO:0020104 - leaf sheath
PO:0007520 - root development stage
PO:0025034 - leaf
Os02g0787300 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g54600.1
EMF2B OsEMF2b
EMF2b
GW9
OsGW9
GW9/OsEMF2b
OsPcG4
PcG4
 EMBRYONIC FLOWER 2B EMBRYONIC FLOWER 2b
grain weight 9
Polycomb group protein 4
 9 Reproductive organ - Heading date
Seed - Morphological traits - Embryo
Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
Seed - Morphological traits - Grain shape
Vegetative organ - Culm
Character as QTL - Germination
 GO:0031519 - PcG protein complex
GO:0042127 - regulation of cell proliferation
GO:0010336 - gibberellic acid homeostasis
GO:0046872 - metal ion binding
GO:0070734 - histone H3-K27 methylation
GO:0009908 - flower development
GO:0048573 - photoperiodism, flowering
GO:0005677 - chromatin silencing complex
GO:0030154 - cell differentiation
GO:0010187 - negative regulation of seed germination
GO:0031507 - heterochromatin formation
GO:0005622 - intracellular
GO:0008270 - zinc ion binding
GO:0031490 - chromatin DNA binding
GO:0001558 - regulation of cell growth
GO:0048586 - regulation of long-day photoperiodism, flowering
GO:0048497 - maintenance of floral organ identity
GO:0009651 - response to salt stress
GO:0005634 - nucleus
GO:0009740 - gibberellic acid mediated signaling
 TO:0000411 - seed length to width ratio
TO:0000657 - spikelet anatomy and morphology trait
TO:0006001 - salt tolerance
TO:0000447 - filled grain number
TO:0000397 - grain size
TO:0000557 - secondary branch number
TO:0000145 - internode length
TO:0000339 - stem thickness
TO:0000382 - 1000-seed weight
TO:0000590 - grain weight
TO:0000734 - grain length
TO:0000430 - germination rate
TO:0000207 - plant height
TO:0002616 - flowering time
TO:0000137 - days to heading
TO:0006019 - floral organ identity
TO:0000346 - tiller number
TO:0002675 - gibberellic acid content
 PO:0009006 - shoot system
PO:0025281 - pollen
PO:0020056 - tegmen
PO:0020104 - leaf sheath
PO:0007633 - endosperm development stage
PO:0009005 - root
PO:0009047 - stem
PO:0009049 - inflorescence
PO:0025034 - leaf
Os09g0306800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os09g13630.1
CLF OsSET24
SET24
OsSDG711
SDG711
EZ1
OsEZ1
OsCLF
OsPcG1
PcG1
 CURLY LEAF SET protein 24
polycomb protein EZ1
SET DOMAIN GROUP 711
Polycomb group protein 1
 6 Reproductive organ - panicle
Character as QTL - Plant growth activity
Vegetative organ - Leaf
Seed - Physiological traits - Storage substances
Reproductive organ - Spikelet, flower, glume, awn
Biochemical character
Reproductive organ - Heading date
Tolerance and resistance - Stress tolerance
Other
Seed - Morphological traits
Seed - Morphological traits - Endosperm
Seed
 GO:0001558 - regulation of cell growth
GO:0006349 - genetic imprinting
GO:0031519 - PcG protein complex
GO:0046976 - histone methyltransferase activity (H3-K27 specific)
GO:0005634 - nucleus
GO:0042127 - regulation of cell proliferation
GO:0009823 - cytokinin catabolic process
GO:0048316 - seed development
GO:0034968 - histone lysine methylation
GO:0003700 - transcription factor activity
GO:0006306 - DNA methylation
GO:0010048 - vernalization response
GO:0009908 - flower development
GO:0048586 - regulation of long-day photoperiodism, flowering
GO:0009651 - response to salt stress
GO:0016571 - histone methylation
GO:0031047 - gene silencing by RNA
GO:0045857 - negative regulation of molecular function, epigenetic
GO:0048574 - long-day photoperiodism, flowering
GO:0051567 - histone H3-K9 methylation
GO:0003727 - single-stranded RNA binding
GO:0010229 - inflorescence development
GO:0009690 - cytokinin metabolic process
GO:0003677 - DNA binding
GO:0009691 - cytokinin biosynthetic process
GO:0040029 - regulation of gene expression, epigenetic
GO:0009960 - endosperm development
GO:0009294 - DNA mediated transformation
GO:0009965 - leaf morphogenesis
GO:0010228 - vegetative to reproductive phase transition
GO:0005982 - starch metabolic process
GO:0040014 - regulation of multicellular organism growth
 TO:0006032 - panicle size
TO:0002637 - leaf size
TO:0000558 - small vascular bundle number
TO:0002758 - flag leaf lamina width
TO:0000132 - basal internode diameter
TO:0000145 - internode length
TO:0000590 - grain weight
TO:0000152 - panicle number
TO:0000653 - seed development trait
TO:0000040 - panicle length
TO:0002660 - cytokinin content
TO:0006001 - salt tolerance
TO:0000231 - endospermless
TO:0000539 - large vascular bundle number
TO:0000357 - growth and development trait
TO:0000397 - grain size
TO:0000207 - plant height
TO:0000339 - stem thickness
TO:0000621 - inflorescence development trait
TO:0002616 - flowering time
TO:0000391 - seed size
TO:0000696 - starch content
 PO:0007633 - endosperm development stage
PO:0020056 - tegmen
PO:0001083 - inflorescence development stage
PO:0001170 - seed development stage
PO:0009089 - endosperm
PO:0000230 - inflorescence meristem
Os06g0275500 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g16390.1
SET1 OsiEZ1
OsSET1
iEZ1
OsEZ1/OsiEZ1
OsEZ1
EZ1
ez1
OsSET15
SDG718
DLN84
OsDLN84
OsSDG718
OsPcG2
PcG2
 SET-DOMAIN-CONTAINING PROTEIN 1 indica Enhancer of Zeste 1
SET protein 15
DLN repressor 84
DLN motif protein 84
Polycomb group protein 2
ENHANCER OF ZESTE 1
 3 Other
Reproductive organ - Heading date
Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
Seed
 GO:0048587 - regulation of short-day photoperiodism, flowering
GO:0009790 - embryonic development
GO:0003677 - DNA binding
GO:0006349 - genetic imprinting
GO:0031519 - PcG protein complex
GO:0048575 - short-day photoperiodism, flowering
GO:0009960 - endosperm development
GO:0009651 - response to salt stress
GO:0003727 - single-stranded RNA binding
 TO:0006001 - salt tolerance
TO:0000428 - callus induction
TO:0002616 - flowering time
 PO:0009089 - endosperm
PO:0020056 - tegmen
Os03g0307800 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os03g19480.1
FIE1 OsFIE1
OsWD40-154
OsEnS-116
OsFIE1/OsWD40-154
WD40-154
OsPcG6
PcG6
 FERTILIZATION-INDEPENDENT ENDOSPERM 1 FERTILIZATION-INDEPENDENT ENDOSPERM1
Fertilization-Independent Endosperm 1
dwarf and flower aberrant mutant
endosperm-specific gene 116
Polycomb group protein 6
 8 Reproductive organ - Spikelet, flower, glume, awn
Character as QTL - Grain quality
Seed - Physiological traits - Storage substances
Seed - Morphological traits - Endosperm
Seed - Morphological traits
Vegetative organ - Culm
Seed - Physiological traits - Dormancy
Tolerance and resistance - Stress tolerance
 GO:0009409 - response to cold
GO:0010380 - regulation of chlorophyll biosynthetic process
GO:0010342 - cellularization of endosperm
GO:0009960 - endosperm development
GO:0010187 - negative regulation of seed germination
GO:0000003 - reproduction
GO:0051782 - negative regulation of cell division
GO:0010373 - negative regulation of gibberellin biosynthetic process
GO:0043078 - polar nucleus
GO:0006349 - genetic imprinting
GO:0043470 - regulation of carbohydrate catabolic process
GO:0009651 - response to salt stress
GO:0048316 - seed development
GO:0009790 - embryonic development
GO:0048598 - embryonic morphogenesis
GO:0019216 - regulation of lipid metabolic process
GO:0048623 - seed germination on parent plant
GO:0010162 - seed dormancy
GO:0016571 - histone methylation
 TO:0000465 - mineral and ion content related trait
TO:0000291 - carbohydrate content
TO:0000107 - endosperm storage protein-1 content
TO:0002680 - albumin content
TO:0000710 - globulin protein content
TO:0000281 - metabolite content related trait
TO:0000604 - fat and essential oil content
TO:0002675 - gibberellic acid content
TO:0002667 - abscisic acid content
TO:0000064 - embryo related trait
TO:0000619 - vivipary
TO:0000253 - seed dormancy
TO:0002673 - amino acid content
TO:0000653 - seed development trait
TO:0000391 - seed size
TO:0000455 - seed set percent
TO:0002653 - endosperm storage protein content
TO:0006001 - salt tolerance
 PO:0020090 - embryo sac central cell
PO:0007633 - endosperm development stage
PO:0007632 - seed maturation stage
PO:0020056 - tegmen
PO:0001170 - seed development stage
PO:0009089 - endosperm
Os08g0137250 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os08g04290.1
BLS1 OsBLS1
OsG1L6
G1L6
TH1
OsTH1
TH1/BSG1/BLS1/AFD1
BSG1
OsBSG1
AFD1
OsAFD1
BH1
OsBH1
 BEAK LIKE SPIKELET 1 G1 LIKE PROTEIN 6
TRIANGULAR HULL1
TRIANGULAR HULL 1
BEAK LIKE SPIKELET1
abnormal ower and dwarf1
beak-shaped grain1
BEAK-SHAPED GRAIN 1
ABNORMAL FLOWER AND DWARF 1
 2 Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
Vegetative organ - Culm
Other
Seed - Morphological traits - Grain shape
 GO:0003677 - DNA binding
GO:0001558 - regulation of cell growth
GO:0005634 - nucleus
GO:0009414 - response to water deprivation
GO:0009299 - mRNA transcription
GO:0006355 - regulation of transcription, DNA-dependent
GO:0008361 - regulation of cell size
GO:0009416 - response to light stimulus
GO:0009908 - flower development
GO:0048437 - floral organ development
GO:0010229 - inflorescence development
GO:0007275 - multicellular organismal development
GO:0051302 - regulation of cell division
 TO:0000564 - spikelet width
TO:0000396 - grain yield
TO:0000397 - grain size
TO:0000207 - plant height
TO:0006011 - lodicule shape
TO:0000657 - spikelet anatomy and morphology trait
TO:0000621 - inflorescence development trait
TO:0000079 - lemma and palea anatomy and morphology trait
TO:0002762 - width of grain with hull
TO:0000276 - drought tolerance
TO:0000421 - pollen fertility
TO:0000590 - grain weight
TO:0000180 - spikelet fertility
TO:0000145 - internode length
TO:0000040 - panicle length
TO:0000614 - lemma shape
TO:0002730 - grain shape
 PO:0020104 - leaf sheath
PO:0025585 - floral organ formation stage
PO:0001083 - inflorescence development stage
PO:0001047 - lemma development stage
PO:0009049 - inflorescence
PO:0020032 - plumule
PO:0009038 - palea
PO:0001048 - palea development stage
PO:0001170 - seed development stage
PO:0009037 - lemma
Os02g0811000 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g56610.1
EP3 EP3/LP
LP
OsLP
OsFbox076
OsFbox76
Os_F0106
OsEP3
OsFBK5
FBK5
 ERECT PANICLE 3 LARGER PANICLE
F-box protein 76
F-box-type E3 ubiquitin ligase K5
 2 Vegetative organ - Leaf
Vegetative organ - Culm
Seed - Morphological traits - Grain shape
Character as QTL - Yield and productivity
Reproductive organ - Panicle, Mode of branching
Reproductive organ - Spikelet, flower, glume, awn
 GO:0005737 - cytoplasm
GO:0009908 - flower development
GO:0010052 - guard cell differentiation
GO:0005634 - nucleus
GO:0009760 - C4 photosynthesis
GO:0010229 - inflorescence development
GO:0010118 - stomatal movement
GO:0048513 - organ development
GO:0048437 - floral organ development
GO:0048316 - seed development
 TO:0000621 - inflorescence development trait
TO:0000357 - growth and development trait
TO:0002600 - flower organ size
TO:0006013 - carpel number
TO:0000531 - anther length
TO:0000370 - leaf width
TO:0000625 - spikelet density
TO:0000653 - seed development trait
TO:0002768 - spikelet length
TO:0000371 - yield trait
TO:0000564 - spikelet width
TO:0006038 - floral organ number
TO:0006022 - floral organ development trait
TO:0000050 - inflorescence branching
TO:0000396 - grain yield
TO:0002759 - grain number
TO:0000590 - grain weight
TO:0000207 - plant height
TO:0000269 - 100-seed weight
TO:0000622 - flower development trait
TO:0000734 - grain length
TO:0000447 - filled grain number
TO:0000040 - panicle length
TO:0000391 - seed size
TO:0006029 - glume number
TO:0000225 - stamen number
TO:0000421 - pollen fertility
TO:0000397 - grain size
TO:0000135 - leaf length
 PO:0025178 - stem epidermis
PO:0006023 - bundle sheath
PO:0004010 - meristematic cell
PO:0009066 - anther
PO:0009072 - plant ovary
PO:0025281 - pollen
PO:0007615 - flower development stage
PO:0001083 - inflorescence development stage
PO:0001170 - seed development stage
PO:0025585 - floral organ formation stage
PO:0009005 - root
PO:0009047 - stem
PO:0025034 - leaf
PO:0009010 - seed
PO:0009046 - flower
PO:0020127 - primary root
PO:0009013 - portion of meristem tissue
PO:0020123 - root cap
PO:0006036 - root epidermis
Os02g0260200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os02g15950.1
ANA Ana*
 AWN DEVELOPMENT A Awn development-a
 Reproductive organ - Spikelet, flower, glume, awn
 GO:0007275 - multicellular organismal development
 TO:0000072 - awn length
TO:0000146 - seed length
 PO:0009010 - seed
PO:0006032 - lemma awn
-
ANB Anb*
 AWN DEVELOPMENT B Awn development-b
 Reproductive organ - Spikelet, flower, glume, awn
 GO:0007275 - multicellular organismal development
 TO:0000072 - awn length
TO:0000146 - seed length
 PO:0006032 - lemma awn
PO:0009009 - plant embryo
-
BD2 bd2
 BEAKED LEMMA 2 beaked lemma2
beaked lemma 2
beaked lemma-2
 Reproductive organ - Spikelet, flower, glume, awn
 GO:0007275 - multicellular organismal development
 TO:0000079 - lemma and palea anatomy and morphology trait
 PO:0009037 - lemma
PO:0009038 - palea
-
CLW clw
 CLAW SHAPED SPIKELET claw shaped spikelet
 Reproductive organ - Spikelet, flower, glume, awn
 GO:0007275 - multicellular organismal development
 TO:0000079 - lemma and palea anatomy and morphology trait
 PO:0009038 - palea
PO:0009082 - spikelet floret
PO:0009037 - lemma
-
FON1 OsFON1
fon1
OsRLCK219
RLCK219
 FLORAL ORGAN NUMBER 1 floral organ number1
floral organ number 1
floral organ number-1
CLV1 orthologue
Receptor-like Cytoplasmic Kinase 219
 6 Reproductive organ - panicle
Reproductive organ - Spikelet, flower, glume, awn
Seed
Vegetative organ - Culm
 GO:0009887 - organ morphogenesis
GO:0016020 - membrane
GO:0032940 - secretion by cell
GO:0009888 - tissue development
GO:0004702 - receptor signaling protein serine/threonine kinase activity
GO:0005886 - plasma membrane
GO:0009934 - regulation of meristem structural organization
GO:0016021 - integral to membrane
GO:0030154 - cell differentiation
GO:0048316 - seed development
GO:0004672 - protein kinase activity
GO:0004674 - protein serine/threonine kinase activity
GO:0010080 - regulation of floral meristem growth
GO:0048833 - specification of floral organ number
GO:0010229 - inflorescence development
GO:0004713 - protein tyrosine kinase activity
GO:0005524 - ATP binding
GO:0006468 - protein amino acid phosphorylation
 TO:0000225 - stamen number
TO:0000079 - lemma and palea anatomy and morphology trait
TO:0000052 - primary branching of inflorescence
TO:0000621 - inflorescence development trait
TO:0000145 - internode length
TO:0000346 - tiller number
TO:0000184 - seed anatomy and morphology trait
TO:0000223 - pistil anatomy and morphology trait
TO:0000499 - flower anatomy and morphology trait
TO:0000653 - seed development trait
TO:0000249 - leaf senescence
TO:0000329 - tillering ability
 PO:0000229 - flower meristem
PO:0009030 - carpel
PO:0001083 - inflorescence development stage
PO:0009046 - flower
PO:0009010 - seed
PO:0001170 - seed development stage
PO:0009049 - inflorescence
PO:0009036 - lodicule
PO:0000230 - inflorescence meristem
PO:0009029 - stamen
Os06g0717200 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os06g50340.1
image Id ( 6703 )
FON2 fon2
OsFON2
FON4
OsFON4
FON2/FON4
TG1
 FLORAL ORGAN NUMBER 2 floral organ number2
floral organ number 2
floral organ number-2
floral organ number4
floral organ number 4
twin-grain1
twin-grain 1
 11 Reproductive organ - Heading date
Reproductive organ - Spikelet, flower, glume, awn
Character as QTL - Yield and productivity
 GO:0007275 - multicellular organismal development
GO:0009887 - organ morphogenesis
GO:0009888 - tissue development
GO:0030154 - cell differentiation
GO:0005576 - extracellular region
GO:0019827 - stem cell maintenance
 TO:0000445 - seed number
TO:0006038 - floral organ number
TO:0002759 - grain number
TO:0000499 - flower anatomy and morphology trait
 PO:0009046 - flower
Os11g0595400 Oryzabase ( IRGSP 1.0 / Build5 )
Rap ( IRGSP 1.0 / Build5 ) 		LOC_Os11g38270.1
image Id ( 6704 )
FOR1 for1*
for1
 FLOWER ORGANIZATION 1 flower organization1
flower organization 1
flower organization-1
 Reproductive organ - Spikelet, flower, glume, awn
 GO:0009887 - organ morphogenesis
GO:0009888 - tissue development
 TO:0000499 - flower anatomy and morphology trait
 PO:0009046 - flower
-
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